RNA–Protein interactions for RNA: ENST00000216513.4

SIX4-201, Transcript of SIX homeobox 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SIX4, Length 6,285 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SIX4-201ENST00000216513 MTF1Q14872 753 aa14.48□□□□□ -0.09
SIX4-201ENST00000216513 ZC3H18Q86VM9 953 aaKnown RBP14.48□□□□□ -0.09
SIX4-201ENST00000216513 SPIRE2Q8WWL2 714 aa14.48□□□□□ -0.09
SIX4-201ENST00000216513 PNMA5Q96PV4 448 aa14.48□□□□□ -0.09
SIX4-201ENST00000216513 PCDHB5Q9Y5E4 795 aa14.48□□□□□ -0.09
SIX4-201ENST00000216513 NDUFS2O75306 463 aa14.48□□□□□ -0.09
SIX4-201ENST00000216513 TOM1L1O75674 476 aa14.48□□□□□ -0.09
SIX4-201ENST00000216513 CXCL14O95715 111 aa14.48□□□□□ -0.09
SIX4-201ENST00000216513 GJB1P08034 283 aa14.48□□□□□ -0.09
SIX4-201ENST00000216513 CXCL8P10145 99 aa14.48□□□□□ -0.09
SIX4-201ENST00000216513 MSH2P43246 934 aa14.48□□□□□ -0.09
SIX4-201ENST00000216513 ACADSBP45954 432 aa14.48□□□□□ -0.09
SIX4-201ENST00000216513 WHAMMP3Q1A5X7 153 aa14.48□□□□□ -0.09
SIX4-201ENST00000216513 HS6ST3Q8IZP7 471 aa14.48□□□□□ -0.09
SIX4-201ENST00000216513 IL25Q9H293 177 aa14.48□□□□□ -0.09
SIX4-201ENST00000216513 NRCAMQ92823 1304 aa14.48□□□□□ -0.09
SIX4-201ENST00000216513 UBA1P22314 1058 aaKnown RBP14.48□□□□□ -0.09
SIX4-201ENST00000216513 BRD2P25440 801 aaKnown RBP14.48□□□□□ -0.09
SIX4-201ENST00000216513 TROAPQ12815 778 aa14.48□□□□□ -0.09
SIX4-201ENST00000216513 MEI1Q5TIA1 1274 aa14.48□□□□□ -0.09
SIX4-201ENST00000216513 TRIM72Q6ZMU5 477 aa14.48□□□□□ -0.09
SIX4-201ENST00000216513 RD3Q7Z3Z2 195 aa14.48□□□□□ -0.09
SIX4-201ENST00000216513 ATXN7L3BQ96GX2 97 aa14.48□□□□□ -0.09
SIX4-201ENST00000216513 DDX43Q9NXZ2 648 aaKnown RBP14.48□□□□□ -0.09
SIX4-201ENST00000216513 SYNDIG1LA6NDD5 238 aa14.47□□□□□ -0.09
SIX4-201ENST00000216513 TUBBP07437 444 aa14.47□□□□□ -0.09
SIX4-201ENST00000216513 CCL5P13501 91 aa14.47□□□□□ -0.09
SIX4-201ENST00000216513 NPTX2P47972 431 aa14.47□□□□□ -0.09
SIX4-201ENST00000216513 UBE2Q2Q8WVN8 375 aa14.47□□□□□ -0.09
SIX4-201ENST00000216513 AGAP3Q96P47 875 aa14.47□□□□□ -0.09
SIX4-201ENST00000216513 WDR18Q9BV38 432 aa14.47□□□□□ -0.09
SIX4-201ENST00000216513 APOL1O14791 398 aa14.47□□□□□ -0.09
SIX4-201ENST00000216513 PALMO75781 387 aa14.47□□□□□ -0.09
SIX4-201ENST00000216513 KRT7P08729 469 aa14.47□□□□□ -0.09
SIX4-201ENST00000216513 POLD3Q15054 466 aaPredicted RBP14.47□□□□□ -0.09
SIX4-201ENST00000216513 RFX8Q6ZV50 586 aa14.47□□□□□ -0.09
SIX4-201ENST00000216513 GAD1Q99259 594 aa14.47□□□□□ -0.09
SIX4-201ENST00000216513 NIF3L1Q9GZT8 377 aa14.47□□□□□ -0.09
SIX4-201ENST00000216513 PDGFCQ9NRA1 345 aa14.47□□□□□ -0.09
SIX4-201ENST00000216513 TMEM150BA6NC51 233 aa14.47□□□□□ -0.09
SIX4-201ENST00000216513 KPNA2P52292 529 aaKnown RBP14.47□□□□□ -0.09
SIX4-201ENST00000216513 CACNA2D3Q8IZS8 1091 aa14.47□□□□□ -0.09
SIX4-201ENST00000216513 LENG1Q96BZ8 264 aaPredicted RBP14.47□□□□□ -0.09
SIX4-201ENST00000216513 SMARCAL1Q9NZC9 954 aa14.47□□□□□ -0.09
SIX4-201ENST00000216513 ATP9BO43861 1147 aa14.47□□□□□ -0.09
SIX4-201ENST00000216513 TSPAN3O60637 253 aa14.47□□□□□ -0.09
SIX4-201ENST00000216513 HOXC6P09630 235 aa14.47□□□□□ -0.09
SIX4-201ENST00000216513 SPATA31D3P0C874 917 aa14.47□□□□□ -0.09
SIX4-201ENST00000216513 MLH1P40692 756 aa14.47□□□□□ -0.09
SIX4-201ENST00000216513 SPATA31D4Q6ZUB0 917 aa14.47□□□□□ -0.09
SIX4-201ENST00000216513 FRMD5Q7Z6J6 570 aa14.47□□□□□ -0.09
SIX4-201ENST00000216513 CD302Q8IX05 232 aa14.47□□□□□ -0.09
SIX4-201ENST00000216513 CYP2W1Q8TAV3 490 aa14.47□□□□□ -0.09
SIX4-201ENST00000216513 ELMO3Q96BJ8 720 aa14.47□□□□□ -0.09
SIX4-201ENST00000216513 PARD6BQ9BYG5 372 aa14.47□□□□□ -0.09
SIX4-201ENST00000216513 MIR1-1HGQ9H1L0 117 aa14.47□□□□□ -0.09
SIX4-201ENST00000216513 MED24O75448 989 aa14.46□□□□□ -0.09
SIX4-201ENST00000216513 ACAT1P24752 427 aaKnown RBP14.46□□□□□ -0.09
SIX4-201ENST00000216513 GTF2H1P32780 548 aa14.46□□□□□ -0.09
SIX4-201ENST00000216513 TRIM67Q6ZTA4 783 aa14.46□□□□□ -0.09
SIX4-201ENST00000216513 CROCCP2Q86T23 111 aa14.46□□□□□ -0.09
SIX4-201ENST00000216513 AGR3Q8TD06 166 aa14.46□□□□□ -0.09
SIX4-201ENST00000216513 RAPGEF5Q92565 580 aa14.46□□□□□ -0.09
SIX4-201ENST00000216513 TRIM9Q9C026 710 aa14.46□□□□□ -0.09
SIX4-201ENST00000216513 IL17RBQ9NRM6 502 aa14.46□□□□□ -0.09
SIX4-201ENST00000216513 NT5C1B-RDH14C9J2C7 533 aa14.46□□□□□ -0.09
SIX4-201ENST00000216513 PPFIA2O75334 1257 aa14.46□□□□□ -0.09
SIX4-201ENST00000216513 HADHAP40939 763 aa14.46□□□□□ -0.09
SIX4-201ENST00000216513 PRMT2P55345 433 aa14.46□□□□□ -0.09
SIX4-201ENST00000216513 SLC27A1Q6PCB7 646 aa14.46□□□□□ -0.09
SIX4-201ENST00000216513 DAAM1Q9Y4D1 1078 aa14.46□□□□□ -0.09
SIX4-201ENST00000216513 ARHGEF28Q8N1W1 1705 aaKnown RBP14.46□□□□□ -0.09
SIX4-201ENST00000216513 RNF40O75150 1001 aa14.46□□□□□ -0.09
SIX4-201ENST00000216513 ASGR1P07306 291 aa14.46□□□□□ -0.09
SIX4-201ENST00000216513 FMR1Q06787 632 aaKnown RBP eCLIP14.46□□□□□ -0.09
SIX4-201ENST00000216513 CATSPERBQ9H7T0 1116 aa14.46□□□□□ -0.09
SIX4-201ENST00000216513 TBC1D12O60347 775 aa14.46□□□□□ -0.09
SIX4-201ENST00000216513 LHX1P48742 406 aa14.46□□□□□ -0.09
SIX4-201ENST00000216513 SLC39A12Q504Y0 691 aa14.46□□□□□ -0.09
SIX4-201ENST00000216513 HERC6Q8IVU3 1022 aa14.46□□□□□ -0.09
SIX4-201ENST00000216513 LPPQ93052 612 aa14.46□□□□□ -0.09
SIX4-201ENST00000216513 CINPQ9BW66 212 aaPredicted RBP14.46□□□□□ -0.09
SIX4-201ENST00000216513 SEPT4O43236 478 aa14.46□□□□□ -0.1
SIX4-201ENST00000216513 SCNN1GP51170 649 aa14.46□□□□□ -0.1
SIX4-201ENST00000216513 MMEL1Q495T6 779 aa14.46□□□□□ -0.1
SIX4-201ENST00000216513 MIPOL1Q8TD10 442 aa14.46□□□□□ -0.1
SIX4-201ENST00000216513 ULK4Q96C45 1275 aa14.46□□□□□ -0.1
SIX4-201ENST00000216513 FAM163AQ96GL9 167 aaPredicted RBP14.46□□□□□ -0.1
SIX4-201ENST00000216513 EIF4ENIF1Q9NRA8 985 aaKnown RBP14.46□□□□□ -0.1
SIX4-201ENST00000216513 NOVA2Q9UNW9 492 aaKnown RBP14.46□□□□□ -0.1
SIX4-201ENST00000216513 MRPL42Q9Y6G3 142 aaKnown RBP14.46□□□□□ -0.1
SIX4-201ENST00000216513 ATRNO75882 1429 aa14.45□□□□□ -0.1
SIX4-201ENST00000216513 MFSD4BQ5TF39 518 aa14.45□□□□□ -0.1
SIX4-201ENST00000216513 GPAT2Q6NUI2 795 aa14.45□□□□□ -0.1
SIX4-201ENST00000216513 MMS22LQ6ZRQ5 1243 aa14.45□□□□□ -0.1
SIX4-201ENST00000216513 SLC25A41Q8N5S1 370 aa14.45□□□□□ -0.1
SIX4-201ENST00000216513 ATP11CQ8NB49 1132 aa14.45□□□□□ -0.1
SIX4-201ENST00000216513 XPO6Q96QU8 1125 aaKnown RBP14.45□□□□□ -0.1
SIX4-201ENST00000216513 MRIQ9BWK5 157 aa14.45□□□□□ -0.1
SIX4-201ENST00000216513 XRN2Q9H0D6 950 aaKnown RBP eCLIP14.45□□□□□ -0.1
Retrieved 100 of 20,778 RNA–protein pairs in 15.9 ms