RNA–Protein interactions for RNA: ENST00000638142.2

SYNGAP1-227, Transcript of synaptic Ras GTPase activating protein 1, humanhuman

TSL 5

Gene SYNGAP1, Length 2,499 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNGAP1-227ENST00000638142 ABCD1P33897 745 aa21.33■■□□□ 1.01
SYNGAP1-227ENST00000638142 MAMLD1Q13495 774 aa21.33■■□□□ 1.01
SYNGAP1-227ENST00000638142 PSMD6Q15008 389 aa21.33■■□□□ 1.01
SYNGAP1-227ENST00000638142 C2CD6Q53TS8 623 aa21.33■■□□□ 1.01
SYNGAP1-227ENST00000638142 DAB2IPQ5VWQ8 1189 aa21.33■■□□□ 1.01
SYNGAP1-227ENST00000638142 GSTA5Q7RTV2 222 aa21.33■■□□□ 1.01
SYNGAP1-227ENST00000638142 NSMCE1Q8WV22 266 aa21.33■■□□□ 1.01
SYNGAP1-227ENST00000638142 C11orf70Q9BRQ4 267 aa21.33■■□□□ 1.01
SYNGAP1-227ENST00000638142 PNMA3Q9UL41 463 aa21.33■■□□□ 1.01
SYNGAP1-227ENST00000638142 TESPA1A2RU30 521 aaPredicted RBP21.33■■□□□ 1
SYNGAP1-227ENST00000638142 H0YCG3 227 aa21.33■■□□□ 1
SYNGAP1-227ENST00000638142 DKC1O60832 514 aaKnown RBP eCLIP21.33■■□□□ 1
SYNGAP1-227ENST00000638142 HLA-DRAP01903 254 aa21.33■■□□□ 1
SYNGAP1-227ENST00000638142 CCND1P24385 295 aa21.33■■□□□ 1
SYNGAP1-227ENST00000638142 NOMO3P69849 1222 aa21.33■■□□□ 1
SYNGAP1-227ENST00000638142 MYO1EQ12965 1108 aa21.33■■□□□ 1
SYNGAP1-227ENST00000638142 P3H1Q32P28 736 aa21.33■■□□□ 1
SYNGAP1-227ENST00000638142 PLEKHA7Q6IQ23 1121 aa21.33■■□□□ 1
SYNGAP1-227ENST00000638142 PHF13Q86YI8 300 aaPredicted RBP21.33■■□□□ 1
SYNGAP1-227ENST00000638142 TTC25Q96NG3 672 aa21.33■■□□□ 1
SYNGAP1-227ENST00000638142 FNBP1Q96RU3 617 aa21.33■■□□□ 1
SYNGAP1-227ENST00000638142 PITPNM3Q9BZ71 974 aa21.33■■□□□ 1
SYNGAP1-227ENST00000638142 DGAT1O75907 488 aa21.32■■□□□ 1
SYNGAP1-227ENST00000638142 ANP32DO95626 131 aa21.32■■□□□ 1
SYNGAP1-227ENST00000638142 KRT16P08779 473 aa21.32■■□□□ 1
SYNGAP1-227ENST00000638142 DSG3P32926 999 aa21.32■■□□□ 1
SYNGAP1-227ENST00000638142 SOX10P56693 466 aa21.32■■□□□ 1
SYNGAP1-227ENST00000638142 MAP3K10Q02779 954 aa21.32■■□□□ 1
SYNGAP1-227ENST00000638142 TMED2Q15363 201 aa21.32■■□□□ 1
SYNGAP1-227ENST00000638142 TDRPQ86YL5 185 aa21.32■■□□□ 1
SYNGAP1-227ENST00000638142 ABRAQ8N0Z2 381 aa21.32■■□□□ 1
SYNGAP1-227ENST00000638142 ATP6V0A1Q93050 837 aa21.32■■□□□ 1
SYNGAP1-227ENST00000638142 BATF3Q9NR55 127 aa21.32■■□□□ 1
SYNGAP1-227ENST00000638142 NOP53Q9NZM5 478 aaKnown RBP21.32■■□□□ 1
SYNGAP1-227ENST00000638142 NFASCO94856 1347 aa21.32■■□□□ 1
SYNGAP1-227ENST00000638142 ACO1P21399 889 aaKnown RBP21.32■■□□□ 1
SYNGAP1-227ENST00000638142 PIK3CAP42336 1068 aa21.32■■□□□ 1
SYNGAP1-227ENST00000638142 MGAT5Q09328 741 aa21.32■■□□□ 1
SYNGAP1-227ENST00000638142 XRRA1Q6P2D8 792 aa21.32■■□□□ 1
SYNGAP1-227ENST00000638142 SEPT14Q6ZU15 432 aa21.32■■□□□ 1
SYNGAP1-227ENST00000638142 NLRX1Q86UT6 975 aa21.32■■□□□ 1
SYNGAP1-227ENST00000638142 FBF1Q8TES7 1133 aa21.32■■□□□ 1
SYNGAP1-227ENST00000638142 FAM118BQ9BPY3 351 aa21.32■■□□□ 1
SYNGAP1-227ENST00000638142 ARHGAP28Q9P2N2 729 aa21.32■■□□□ 1
SYNGAP1-227ENST00000638142 EXOC1LA0A1B0GW35 172 aa21.31■■□□□ 1
SYNGAP1-227ENST00000638142 MAGEB2O15479 319 aa21.31■■□□□ 1
SYNGAP1-227ENST00000638142 C4BPAP04003 597 aaKnown RBP21.31■■□□□ 1
SYNGAP1-227ENST00000638142 CD58P19256 250 aa21.31■■□□□ 1
SYNGAP1-227ENST00000638142 FOXN2P32314 431 aa21.31■■□□□ 1
SYNGAP1-227ENST00000638142 MSH2P43246 934 aa21.31■■□□□ 1
SYNGAP1-227ENST00000638142 SLC18A1P54219 525 aa21.31■■□□□ 1
SYNGAP1-227ENST00000638142 C1QBPQ07021 282 aaKnown RBP21.31■■□□□ 1
SYNGAP1-227ENST00000638142 ARHGEF16Q5VV41 709 aa21.31■■□□□ 1
SYNGAP1-227ENST00000638142 CYP4F22Q6NT55 531 aa21.31■■□□□ 1
SYNGAP1-227ENST00000638142 DRICH1Q6PGQ1 229 aaPredicted RBP21.31■■□□□ 1
SYNGAP1-227ENST00000638142 TRABD2AQ86V40 505 aa21.31■■□□□ 1
SYNGAP1-227ENST00000638142 KIF2BQ8N4N8 673 aa21.31■■□□□ 1
SYNGAP1-227ENST00000638142 PDLIM7Q9NR12 457 aa21.31■■□□□ 1
SYNGAP1-227ENST00000638142 GABBR1Q9UBS5 961 aa21.31■■□□□ 1
SYNGAP1-227ENST00000638142 STARD13Q9Y3M8 1113 aa21.31■■□□□ 1
SYNGAP1-227ENST00000638142 L3MBTL1Q9Y468 752 aa21.31■■□□□ 1
SYNGAP1-227ENST00000638142 DNALI1O14645 258 aaPredicted RBP21.31■■□□□ 1
SYNGAP1-227ENST00000638142 ZNF862O60290 1169 aa21.31■■□□□ 1
SYNGAP1-227ENST00000638142 TNNI1P19237 187 aa21.31■■□□□ 1
SYNGAP1-227ENST00000638142 WDR4P57081 412 aaKnown RBP21.31■■□□□ 1
SYNGAP1-227ENST00000638142 NFX1Q12986 1120 aaKnown RBP21.31■■□□□ 1
SYNGAP1-227ENST00000638142 TDRD10Q5VZ19 366 aaKnown RBP21.31■■□□□ 1
SYNGAP1-227ENST00000638142 MIS18BP1Q6P0N0 1132 aa21.31■■□□□ 1
SYNGAP1-227ENST00000638142 TAS1R3Q7RTX0 852 aa21.31■■□□□ 1
SYNGAP1-227ENST00000638142 ANKS1BQ7Z6G8 1248 aa21.31■■□□□ 1
SYNGAP1-227ENST00000638142 ECHDC2Q86YB7 292 aa21.31■■□□□ 1
SYNGAP1-227ENST00000638142 FAM84AQ96KN4 292 aa21.31■■□□□ 1
SYNGAP1-227ENST00000638142 TLR3O15455 904 aaKnown RBP21.3■■□□□ 1
SYNGAP1-227ENST00000638142 PRPF4O43172 522 aaKnown RBP eCLIP21.3■■□□□ 13e-9■■■■■ 30.9
SYNGAP1-227ENST00000638142 LIASO43766 372 aa21.3■■□□□ 1
SYNGAP1-227ENST00000638142 UNC5CO95185 931 aa21.3■■□□□ 1
SYNGAP1-227ENST00000638142 STBD1O95210 358 aa21.3■■□□□ 1
SYNGAP1-227ENST00000638142 ASMTLO95671 621 aa21.3■■□□□ 1
SYNGAP1-227ENST00000638142 CUL2Q13617 745 aa21.3■■□□□ 1
SYNGAP1-227ENST00000638142 RBM41Q96IZ5 413 aaKnown RBP21.3■■□□□ 1
SYNGAP1-227ENST00000638142 SAYSD1Q9NPB0 183 aa21.3■■□□□ 1
SYNGAP1-227ENST00000638142 USTQ9Y2C2 406 aa21.3■■□□□ 1
SYNGAP1-227ENST00000638142 GNA15P30679 374 aa21.3■■□□□ 1
SYNGAP1-227ENST00000638142 SSR1P43307 286 aaKnown RBP21.3■■□□□ 1
SYNGAP1-227ENST00000638142 LIG4P49917 911 aa21.3■■□□□ 1
SYNGAP1-227ENST00000638142 LACTBP83111 547 aaPredicted RBP21.3■■□□□ 1
SYNGAP1-227ENST00000638142 ADCY1Q08828 1119 aa21.3■■□□□ 1
SYNGAP1-227ENST00000638142 NAA25Q14CX7 972 aa21.3■■□□□ 1
SYNGAP1-227ENST00000638142 LMBRD2Q68DH5 695 aaPredicted RBP21.3■■□□□ 1
SYNGAP1-227ENST00000638142 RGS9BPQ6ZS82 235 aa21.3■■□□□ 1
SYNGAP1-227ENST00000638142 RCOR2Q8IZ40 523 aa21.3■■□□□ 1
SYNGAP1-227ENST00000638142 GPRASP2Q96D09 838 aa21.3■■□□□ 1
SYNGAP1-227ENST00000638142 XPNPEP1Q9NQW7 623 aa21.3■■□□□ 1
SYNGAP1-227ENST00000638142 TXLNGQ9NUQ3 528 aa21.3■■□□□ 1
SYNGAP1-227ENST00000638142 PARVAQ9NVD7 372 aa21.3■■□□□ 1
SYNGAP1-227ENST00000638142 SENP1Q9P0U3 644 aa21.3■■□□□ 1
SYNGAP1-227ENST00000638142 IP6K2Q9UHH9 426 aa21.3■■□□□ 1
SYNGAP1-227ENST00000638142 ARID2Q68CP9 1835 aa21.29■■□□□ 1
SYNGAP1-227ENST00000638142 RAD17O75943 681 aa21.29■■□□□ 1
SYNGAP1-227ENST00000638142 GJC1P36383 396 aa21.29■■□□□ 1
Retrieved 100 of 20,778 RNA–protein pairs in 46.3 ms