RNA–Protein interactions for RNA: ENST00000636228.1

CLN3-246, Transcript of CLN3, battenin, humanhuman

TSL 1 (best) BASIC

Gene CLN3, Length 1,224 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-246ENST00000636228 FAM189A1O60320 539 aa17.57■□□□□ 0.4
CLN3-246ENST00000636228 KINO60870 393 aaKnown RBP17.57■□□□□ 0.4
CLN3-246ENST00000636228 MICAL2O94851 1124 aa17.57■□□□□ 0.4
CLN3-246ENST00000636228 GDI1P31150 447 aa17.57■□□□□ 0.4
CLN3-246ENST00000636228 PPP2R3AQ06190 1150 aa17.57■□□□□ 0.4
CLN3-246ENST00000636228 DUSP4Q13115 394 aa17.57■□□□□ 0.4
CLN3-246ENST00000636228 ARL6IP4Q66PJ3 421 aaKnown RBP17.57■□□□□ 0.4
CLN3-246ENST00000636228 SHKBP1Q8TBC3 707 aa17.57■□□□□ 0.4
CLN3-246ENST00000636228 SMARCD2Q92925 531 aa17.57■□□□□ 0.4
CLN3-246ENST00000636228 CLDN23Q96B33 292 aa17.57■□□□□ 0.4
CLN3-246ENST00000636228 TMEM209Q96SK2 561 aa17.57■□□□□ 0.4
CLN3-246ENST00000636228 ASAH2Q9NR71 780 aa17.57■□□□□ 0.4
CLN3-246ENST00000636228 FBXO4Q9UKT5 387 aa17.57■□□□□ 0.4
CLN3-246ENST00000636228 UBQLN1Q9UMX0 589 aaKnown RBP17.57■□□□□ 0.4
CLN3-246ENST00000636228 YIPF1Q9Y548 306 aa17.57■□□□□ 0.4
CLN3-246ENST00000636228 TRIP11Q15643 1979 aa17.57■□□□□ 0.4
CLN3-246ENST00000636228 FAM186AA6NE01 2351 aa17.56■□□□□ 0.4
CLN3-246ENST00000636228 K7ENM7 598 aa17.56■□□□□ 0.4
CLN3-246ENST00000636228 HNRNPDLO14979 420 aaKnown RBP17.56■□□□□ 0.4
CLN3-246ENST00000636228 SOAT2O75908 522 aa17.56■□□□□ 0.4
CLN3-246ENST00000636228 FAM13AO94988 1023 aa17.56■□□□□ 0.4
CLN3-246ENST00000636228 OAZ2O95190 189 aa17.56■□□□□ 0.4
CLN3-246ENST00000636228 UBA7P41226 1012 aa17.56■□□□□ 0.4
CLN3-246ENST00000636228 KARSQ15046 597 aaKnown RBP17.56■□□□□ 0.4
CLN3-246ENST00000636228 ZNF528Q3MIS6 628 aa17.56■□□□□ 0.4
CLN3-246ENST00000636228 SLC39A4Q6P5W5 647 aa17.56■□□□□ 0.4
CLN3-246ENST00000636228 USP37Q86T82 979 aa17.56■□□□□ 0.4
CLN3-246ENST00000636228 KCTD17Q8N5Z5 321 aa17.56■□□□□ 0.4
CLN3-246ENST00000636228 ZSCAN18Q8TBC5 510 aaPredicted RBP17.56■□□□□ 0.4
CLN3-246ENST00000636228 RUBCNQ92622 972 aa17.56■□□□□ 0.4
CLN3-246ENST00000636228 NELL2Q99435 816 aa17.56■□□□□ 0.4
CLN3-246ENST00000636228 RPF1Q9H9Y2 349 aaKnown RBP17.56■□□□□ 0.4
CLN3-246ENST00000636228 ZNF334Q9HCZ1 680 aaPredicted RBP17.56■□□□□ 0.4
CLN3-246ENST00000636228 BLOC1S4Q9NUP1 217 aa17.56■□□□□ 0.4
CLN3-246ENST00000636228 ODF2LQ9ULJ1 636 aa17.56■□□□□ 0.4
CLN3-246ENST00000636228 A0A1W2PRU2 124 aa17.55■□□□□ 0.4
CLN3-246ENST00000636228 ANKRD63C9JTQ0 380 aa17.55■□□□□ 0.4
CLN3-246ENST00000636228 H0YCG3 227 aa17.55■□□□□ 0.4
CLN3-246ENST00000636228 SPTLC1O15269 473 aa17.55■□□□□ 0.4
CLN3-246ENST00000636228 OGTO15294 1046 aa17.55■□□□□ 0.4
CLN3-246ENST00000636228 NCAM2O15394 837 aa17.55■□□□□ 0.4
CLN3-246ENST00000636228 KRT18P05783 430 aaKnown RBP17.55■□□□□ 0.4
CLN3-246ENST00000636228 PLCG1P19174 1290 aa17.55■□□□□ 0.4
CLN3-246ENST00000636228 CYP3A5P20815 502 aa17.55■□□□□ 0.4
CLN3-246ENST00000636228 NMT1P30419 496 aaKnown RBP17.55■□□□□ 0.4
CLN3-246ENST00000636228 FOXK2Q01167 660 aa17.55■□□□□ 0.4
CLN3-246ENST00000636228 MTAPQ13126 283 aa17.55■□□□□ 0.4
CLN3-246ENST00000636228 STXBP5Q5T5C0 1151 aa17.55■□□□□ 0.4
CLN3-246ENST00000636228 JADE1Q6IE81 842 aa17.55■□□□□ 0.4
CLN3-246ENST00000636228 MAP4K3Q8IVH8 894 aa17.55■□□□□ 0.4
CLN3-246ENST00000636228 TTC9BQ8N6N2 239 aa17.55■□□□□ 0.4
CLN3-246ENST00000636228 ATAD1Q8NBU5 361 aa17.55■□□□□ 0.4
CLN3-246ENST00000636228 BEST2Q8NFU1 509 aa17.55■□□□□ 0.4
CLN3-246ENST00000636228 ATRIPQ8WXE1 791 aa17.55■□□□□ 0.4
CLN3-246ENST00000636228 DNASE1L2Q92874 299 aa17.55■□□□□ 0.4
CLN3-246ENST00000636228 RSPRY1Q96DX4 576 aa17.55■□□□□ 0.4
CLN3-246ENST00000636228 CALML4Q96GE6 196 aa17.55■□□□□ 0.4
CLN3-246ENST00000636228 MSTO1Q9BUK6 570 aa17.55■□□□□ 0.4
CLN3-246ENST00000636228 LRRC3Q9BY71 257 aa17.55■□□□□ 0.4
CLN3-246ENST00000636228 DNAJC25Q9H1X3 360 aa17.55■□□□□ 0.4
CLN3-246ENST00000636228 IKZF4Q9H2S9 585 aa17.55■□□□□ 0.4
CLN3-246ENST00000636228 SLITRK6Q9H5Y7 841 aa17.55■□□□□ 0.4
CLN3-246ENST00000636228 SMC3Q9UQE7 1217 aa17.55■□□□□ 0.4
CLN3-246ENST00000636228 MRPS17Q9Y2R5 130 aaKnown RBP17.55■□□□□ 0.4
CLN3-246ENST00000636228 A0A0B4J269 797 aa17.54■□□□□ 0.4
CLN3-246ENST00000636228 HEPACAM2A8MVW5 462 aa17.54■□□□□ 0.4
CLN3-246ENST00000636228 TISP43B9A030 160 aa17.54■□□□□ 0.4
CLN3-246ENST00000636228 TRAK2O60296 914 aa17.54■□□□□ 0.4
CLN3-246ENST00000636228 NFICP08651 508 aa17.54■□□□□ 0.4
CLN3-246ENST00000636228 PSMC3P17980 439 aa17.54■□□□□ 0.4
CLN3-246ENST00000636228 AARSP49588 968 aaKnown RBP eCLIP17.54■□□□□ 0.4
CLN3-246ENST00000636228 EPHA5P54756 1037 aa17.54■□□□□ 0.4
CLN3-246ENST00000636228 GPR17Q13304 367 aa17.54■□□□□ 0.4
CLN3-246ENST00000636228 ZC2HC1CQ53FD0 456 aaPredicted RBP17.54■□□□□ 0.4
CLN3-246ENST00000636228 SPATA1Q5VX52 437 aa17.54■□□□□ 0.4
CLN3-246ENST00000636228 LARP1BQ659C4 914 aaKnown RBP17.54■□□□□ 0.4
CLN3-246ENST00000636228 OVOS1Q6IE37 1185 aa17.54■□□□□ 0.4
CLN3-246ENST00000636228 ERMP1Q7Z2K6 904 aa17.54■□□□□ 0.4
CLN3-246ENST00000636228 TMC8Q8IU68 726 aa17.54■□□□□ 0.4
CLN3-246ENST00000636228 ZNF687Q8N1G0 1237 aa17.54■□□□□ 0.4
CLN3-246ENST00000636228 RASSF8Q8NHQ8 419 aa17.54■□□□□ 0.4
CLN3-246ENST00000636228 FAM3CQ92520 227 aa17.54■□□□□ 0.4
CLN3-246ENST00000636228 IRF7Q92985 503 aa17.54■□□□□ 0.4
CLN3-246ENST00000636228 AK8Q96MA6 479 aa17.54■□□□□ 0.4
CLN3-246ENST00000636228 PARVGQ9HBI0 331 aa17.54■□□□□ 0.4
CLN3-246ENST00000636228 CPSF3Q9UKF6 684 aaKnown RBP17.54■□□□□ 0.4
CLN3-246ENST00000636228 MAFFQ9ULX9 164 aa17.54■□□□□ 0.4
CLN3-246ENST00000636228 PIAS3Q9Y6X2 628 aa17.54■□□□□ 0.4
CLN3-246ENST00000636228 GVINP1Q7Z2Y8 2422 aa17.53■□□□□ 0.4
CLN3-246ENST00000636228 SPTBN4Q9H254 2564 aa17.53■□□□□ 0.4
CLN3-246ENST00000636228 OR6C75A6NL08 312 aa17.53■□□□□ 0.4
CLN3-246ENST00000636228 MAN2B1O00754 1011 aa17.53■□□□□ 0.4
CLN3-246ENST00000636228 ZNF263O14978 683 aa17.53■□□□□ 0.4
CLN3-246ENST00000636228 PIGRP01833 764 aa17.53■□□□□ 0.4
CLN3-246ENST00000636228 ADRB2P07550 413 aa17.53■□□□□ 0.4
CLN3-246ENST00000636228 MAGEA9P43362 315 aa17.53■□□□□ 0.4
CLN3-246ENST00000636228 RPS9P46781 194 aaKnown RBP17.53■□□□□ 0.4
CLN3-246ENST00000636228 ACOT2P49753 483 aa17.53■□□□□ 0.4
CLN3-246ENST00000636228 ZNF131P52739 623 aa17.53■□□□□ 0.4
CLN3-246ENST00000636228 EPHB3P54753 998 aa17.53■□□□□ 0.4
Retrieved 100 of 20,778 RNA–protein pairs in 32.7 ms