RNA–Protein interactions for RNA: ENST00000625299.1

PNKP-218, Transcript of polynucleotide kinase 3'-phosphatase, humanhuman

TSL 5

Gene PNKP, Length 428 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PNKP-218ENST00000625299 ALKAL1Q6UXT8 129 aa16.06■□□□□ 0.16
PNKP-218ENST00000625299 APPL2Q8NEU8 664 aa16.06■□□□□ 0.16
PNKP-218ENST00000625299 DDX1Q92499 740 aaKnown RBP16.06■□□□□ 0.16
PNKP-218ENST00000625299 MSANTD3Q96H12 275 aa16.06■□□□□ 0.16
PNKP-218ENST00000625299 SUSD3Q96L08 255 aa16.06■□□□□ 0.16
PNKP-218ENST00000625299 TBC1D32Q96NH3 1257 aa16.06■□□□□ 0.16
PNKP-218ENST00000625299 TARS2Q9BW92 718 aaKnown RBP16.06■□□□□ 0.16
PNKP-218ENST00000625299 MRPL4Q9BYD3 311 aaKnown RBP16.06■□□□□ 0.16
PNKP-218ENST00000625299 C8orf33Q9H7E9 229 aaPredicted RBP16.06■□□□□ 0.16
PNKP-218ENST00000625299 TRPV4Q9HBA0 871 aa16.06■□□□□ 0.16
PNKP-218ENST00000625299 C2orf42Q9NWW7 574 aa16.06■□□□□ 0.16
PNKP-218ENST00000625299 ANGPTL2Q9UKU9 493 aa16.06■□□□□ 0.16
PNKP-218ENST00000625299 SPECC1L-ADORA2AF8WAN1 911 aa16.05■□□□□ 0.16
PNKP-218ENST00000625299 AXIN1O15169 862 aa16.05■□□□□ 0.16
PNKP-218ENST00000625299 CHADO15335 359 aa16.05■□□□□ 0.16
PNKP-218ENST00000625299 OR4Q2P0C623 313 aa16.05■□□□□ 0.16
PNKP-218ENST00000625299 KCNE1P15382 129 aa16.05■□□□□ 0.16
PNKP-218ENST00000625299 EPHA5P54756 1037 aa16.05■□□□□ 0.16
PNKP-218ENST00000625299 PON2Q15165 354 aa16.05■□□□□ 0.16
PNKP-218ENST00000625299 ANKRD1Q15327 319 aa16.05■□□□□ 0.16
PNKP-218ENST00000625299 SF3A2Q15428 464 aaKnown RBP16.05■□□□□ 0.16
PNKP-218ENST00000625299 ZNF174Q15697 407 aa16.05■□□□□ 0.16
PNKP-218ENST00000625299 ECM1Q16610 540 aa16.05■□□□□ 0.16
PNKP-218ENST00000625299 WDR44Q5JSH3 913 aa16.05■□□□□ 0.16
PNKP-218ENST00000625299 STXBP5Q5T5C0 1151 aa16.05■□□□□ 0.16
PNKP-218ENST00000625299 C1orf228Q6PIY5 440 aa16.05■□□□□ 0.16
PNKP-218ENST00000625299 C12orf50Q8NA57 414 aaPredicted RBP16.05■□□□□ 0.16
PNKP-218ENST00000625299 NSUN7Q8NE18 718 aaKnown RBP16.05■□□□□ 0.16
PNKP-218ENST00000625299 GTF3C6Q969F1 213 aa16.05■□□□□ 0.16
PNKP-218ENST00000625299 E2F7Q96AV8 911 aa16.05■□□□□ 0.16
PNKP-218ENST00000625299 ZFYVE19Q96K21 471 aa16.05■□□□□ 0.16
PNKP-218ENST00000625299 GPR88Q9GZN0 384 aa16.05■□□□□ 0.16
PNKP-218ENST00000625299 CNTN3Q9P232 1028 aa16.05■□□□□ 0.16
PNKP-218ENST00000625299 RALYQ9UKM9 306 aaKnown RBP16.05■□□□□ 0.16
PNKP-218ENST00000625299 GREB1Q4ZG55 1949 aa16.05■□□□□ 0.16
PNKP-218ENST00000625299 KIF26AQ9ULI4 1882 aaPredicted RBP16.04■□□□□ 0.16
PNKP-218ENST00000625299 DPYSL4O14531 572 aa16.04■□□□□ 0.16
PNKP-218ENST00000625299 FOXD2O60548 495 aaPredicted RBP16.04■□□□□ 0.16
PNKP-218ENST00000625299 MCF2P10911 925 aa16.04■□□□□ 0.16
PNKP-218ENST00000625299 CTHP32929 405 aa16.04■□□□□ 0.16
PNKP-218ENST00000625299 NPTX2P47972 431 aa16.04■□□□□ 0.16
PNKP-218ENST00000625299 DMP1Q13316 513 aaPredicted RBP16.04■□□□□ 0.16
PNKP-218ENST00000625299 SEZ6Q53EL9 994 aa16.04■□□□□ 0.16
PNKP-218ENST00000625299 DGKKQ5KSL6 1271 aa16.04■□□□□ 0.16
PNKP-218ENST00000625299 N4BP2L1Q5TBK1 243 aaPredicted RBP16.04■□□□□ 0.16
PNKP-218ENST00000625299 TMEM130Q8N3G9 435 aa16.04■□□□□ 0.16
PNKP-218ENST00000625299 ARRDC1-AS1Q9H2J1 176 aa16.04■□□□□ 0.16
PNKP-218ENST00000625299 PTPRHQ9HD43 1115 aa16.04■□□□□ 0.16
PNKP-218ENST00000625299 GTSE1Q9NYZ3 720 aa16.04■□□□□ 0.16
PNKP-218ENST00000625299 ANKFY1Q9P2R3 1169 aa16.04■□□□□ 0.16
PNKP-218ENST00000625299 DAXXQ9UER7 740 aaPredicted RBP16.04■□□□□ 0.16
PNKP-218ENST00000625299 TUBGCP4Q9UGJ1 667 aa16.04■□□□□ 0.16
PNKP-218ENST00000625299 PCDHB8Q9UN66 801 aa16.04■□□□□ 0.16
PNKP-218ENST00000625299 KIAA1024Q9UPX6 916 aa16.04■□□□□ 0.16
PNKP-218ENST00000625299 TIMM13Q9Y5L4 95 aaPredicted RBP16.04■□□□□ 0.16
PNKP-218ENST00000625299 CHD6Q8TD26 2715 aa16.04■□□□□ 0.16
PNKP-218ENST00000625299 SPAG17Q6Q759 2223 aa16.03■□□□□ 0.16
PNKP-218ENST00000625299 MYBPHLA2RUH7 354 aa16.03■□□□□ 0.16
PNKP-218ENST00000625299 PAPSS2O95340 614 aaPredicted RBP16.03■□□□□ 0.16
PNKP-218ENST00000625299 PXNP49023 591 aaPredicted RBP16.03■□□□□ 0.16
PNKP-218ENST00000625299 EPHB3P54753 998 aa16.03■□□□□ 0.16
PNKP-218ENST00000625299 MLLT6P55198 1093 aaPredicted RBP16.03■□□□□ 0.16
PNKP-218ENST00000625299 YWHAHQ04917 246 aaPredicted RBP16.03■□□□□ 0.16
PNKP-218ENST00000625299 FCHO2Q0JRZ9 810 aa16.03■□□□□ 0.16
PNKP-218ENST00000625299 PLD1Q13393 1074 aa16.03■□□□□ 0.16
PNKP-218ENST00000625299 SAFBQ15424 915 aaKnown RBP eCLIP16.03■□□□□ 0.16
PNKP-218ENST00000625299 ME3Q16798 604 aa16.03■□□□□ 0.16
PNKP-218ENST00000625299 MPZL3Q6UWV2 235 aa16.03■□□□□ 0.16
PNKP-218ENST00000625299 HAUS6Q7Z4H7 955 aa16.03■□□□□ 0.16
PNKP-218ENST00000625299 WDR5BQ86VZ2 330 aa16.03■□□□□ 0.16
PNKP-218ENST00000625299 TMC8Q8IU68 726 aa16.03■□□□□ 0.16
PNKP-218ENST00000625299 ARID3BQ8IVW6 561 aaPredicted RBP16.03■□□□□ 0.16
PNKP-218ENST00000625299 KMT5AQ9NQR1 393 aa16.03■□□□□ 0.16
PNKP-218ENST00000625299 DDX19AQ9NUU7 478 aaKnown RBP16.03■□□□□ 0.16
PNKP-218ENST00000625299 MAFFQ9ULX9 164 aa16.03■□□□□ 0.16
PNKP-218ENST00000625299 NUP210Q8TEM1 1887 aaPredicted RBP16.02■□□□□ 0.16
PNKP-218ENST00000625299 MEFVO15553 781 aaPredicted RBP16.02■□□□□ 0.16
PNKP-218ENST00000625299 HIP1RO75146 1068 aa16.02■□□□□ 0.16
PNKP-218ENST00000625299 ALDH1A3P47895 512 aa16.02■□□□□ 0.16
PNKP-218ENST00000625299 SPAG1Q07617 926 aa16.02■□□□□ 0.16
PNKP-218ENST00000625299 DUSP4Q13115 394 aa16.02■□□□□ 0.16
PNKP-218ENST00000625299 TAS1R3Q7RTX0 852 aa16.02■□□□□ 0.16
PNKP-218ENST00000625299 RALGPS2Q86X27 583 aaPredicted RBP16.02■□□□□ 0.16
PNKP-218ENST00000625299 ZBTB45Q96K62 511 aaPredicted RBP16.02■□□□□ 0.16
PNKP-218ENST00000625299 LRRC3Q9BY71 257 aa16.02■□□□□ 0.16
PNKP-218ENST00000625299 DNAJC25Q9H1X3 360 aa16.02■□□□□ 0.16
PNKP-218ENST00000625299 CRISPLD1Q9H336 500 aa16.02■□□□□ 0.16
PNKP-218ENST00000625299 ATXN3LQ9H3M9 355 aa16.02■□□□□ 0.16
PNKP-218ENST00000625299 TMEM134Q9H6X4 195 aa16.02■□□□□ 0.16
PNKP-218ENST00000625299 RXFP3Q9NSD7 469 aa16.02■□□□□ 0.16
PNKP-218ENST00000625299 SLC27A5Q9Y2P5 690 aa16.02■□□□□ 0.16
PNKP-218ENST00000625299 EXTL3O43909 919 aa16.01■□□□□ 0.15
PNKP-218ENST00000625299 VNN2O95498 520 aa16.01■□□□□ 0.15
PNKP-218ENST00000625299 CCDC192P0DO97 292 aa16.01■□□□□ 0.15
PNKP-218ENST00000625299 MUTP22033 750 aa16.01■□□□□ 0.15
PNKP-218ENST00000625299 PROZP22891 400 aa16.01■□□□□ 0.15
PNKP-218ENST00000625299 PMLP29590 882 aa16.01■□□□□ 0.15
PNKP-218ENST00000625299 MATR3P43243 847 aaKnown RBP eCLIP16.01■□□□□ 0.15
PNKP-218ENST00000625299 TNK2Q07912 1038 aa16.01■□□□□ 0.15
PNKP-218ENST00000625299 ARHGAP29Q52LW3 1261 aa16.01■□□□□ 0.15
Retrieved 100 of 20,778 RNA–protein pairs in 35.6 ms