RNA–Protein interactions for RNA: ENST00000625216.2

PNKP-217, Transcript of polynucleotide kinase 3'-phosphatase, humanhuman

TSL 5

Gene PNKP, Length 629 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PNKP-217ENST00000625216 XPOTO43592 962 aaKnown RBP13.71□□□□□ -0.21
PNKP-217ENST00000625216 RFPL2O75678 378 aa13.71□□□□□ -0.21
PNKP-217ENST00000625216 ADRB2P07550 413 aa13.71□□□□□ -0.21
PNKP-217ENST00000625216 GAP43P17677 238 aa13.71□□□□□ -0.21
PNKP-217ENST00000625216 CYP3A5P20815 502 aa13.71□□□□□ -0.21
PNKP-217ENST00000625216 ERCC5P28715 1186 aaPredicted RBP13.71□□□□□ -0.21
PNKP-217ENST00000625216 HOXA9P31269 272 aa13.71□□□□□ -0.21
PNKP-217ENST00000625216 PSMD2Q13200 908 aa13.71□□□□□ -0.21
PNKP-217ENST00000625216 MTMR3Q13615 1198 aa13.71□□□□□ -0.21
PNKP-217ENST00000625216 CT47A1Q5JQC4 288 aaPredicted RBP13.71□□□□□ -0.21
PNKP-217ENST00000625216 LIN9Q5TKA1 542 aa13.71□□□□□ -0.21
PNKP-217ENST00000625216 SLFN12LQ6IEE8 588 aa13.71□□□□□ -0.21
PNKP-217ENST00000625216 GLYCTKQ8IVS8 523 aa13.71□□□□□ -0.21
PNKP-217ENST00000625216 CD302Q8IX05 232 aa13.71□□□□□ -0.21
PNKP-217ENST00000625216 C3orf58Q8NDZ4 430 aa13.71□□□□□ -0.21
PNKP-217ENST00000625216 NELFBQ8WX92 580 aa13.71□□□□□ -0.21
PNKP-217ENST00000625216 PBXIP1Q96AQ6 731 aa13.71□□□□□ -0.21
PNKP-217ENST00000625216 ZNF707Q96C28 371 aaPredicted RBP13.71□□□□□ -0.21
PNKP-217ENST00000625216 HVCN1Q96D96 273 aa13.71□□□□□ -0.21
PNKP-217ENST00000625216 HAPLN2Q9GZV7 340 aa13.71□□□□□ -0.21
PNKP-217ENST00000625216 HSD3B7Q9H2F3 369 aa13.71□□□□□ -0.21
PNKP-217ENST00000625216 RAPGEFL1Q9UHV5 662 aa13.71□□□□□ -0.21
PNKP-217ENST00000625216 FBXW11Q9UKB1 542 aa13.71□□□□□ -0.21
PNKP-217ENST00000625216 NUB1Q9Y5A7 615 aa13.71□□□□□ -0.21
PNKP-217ENST00000625216 TRIM49BA6NDI0 452 aa13.7□□□□□ -0.22
PNKP-217ENST00000625216 BECN2A8MW95 431 aa13.7□□□□□ -0.22
PNKP-217ENST00000625216 H7C4K7 107 aa13.7□□□□□ -0.22
PNKP-217ENST00000625216 MEFVO15553 781 aaPredicted RBP13.7□□□□□ -0.22
PNKP-217ENST00000625216 POU2F2P09086 479 aa13.7□□□□□ -0.22
PNKP-217ENST00000625216 PAX3P23760 479 aa13.7□□□□□ -0.22
PNKP-217ENST00000625216 OR1D2P34982 312 aa13.7□□□□□ -0.22
PNKP-217ENST00000625216 BRCC3P46736 316 aa13.7□□□□□ -0.22
PNKP-217ENST00000625216 CASP5P51878 434 aa13.7□□□□□ -0.22
PNKP-217ENST00000625216 PMS1P54277 932 aaKnown RBP13.7□□□□□ -0.22
PNKP-217ENST00000625216 POU5F1Q01860 360 aaKnown RBP13.7□□□□□ -0.22
PNKP-217ENST00000625216 PPP2R3AQ06190 1150 aa13.7□□□□□ -0.22
PNKP-217ENST00000625216 PAK1Q13153 545 aa13.7□□□□□ -0.22
PNKP-217ENST00000625216 ZBTB6Q15916 424 aa13.7□□□□□ -0.22
PNKP-217ENST00000625216 SEZ6Q53EL9 994 aa13.7□□□□□ -0.22
PNKP-217ENST00000625216 ZNF720Q7Z2F6 126 aa13.7□□□□□ -0.22
PNKP-217ENST00000625216 GUF1Q8N442 669 aaKnown RBP13.7□□□□□ -0.22
PNKP-217ENST00000625216 APPL2Q8NEU8 664 aa13.7□□□□□ -0.22
PNKP-217ENST00000625216 ENOX1Q8TC92 643 aaKnown RBP13.7□□□□□ -0.22
PNKP-217ENST00000625216 NXPE3Q969Y0 559 aa13.7□□□□□ -0.22
PNKP-217ENST00000625216 C18orf25Q96B23 403 aaPredicted RBP13.7□□□□□ -0.22
PNKP-217ENST00000625216 GTPBP4Q9BZE4 634 aaKnown RBP13.7□□□□□ -0.22
PNKP-217ENST00000625216 RPF1Q9H9Y2 349 aaKnown RBP13.7□□□□□ -0.22
PNKP-217ENST00000625216 FAM120AQ9NZB2 1118 aaKnown RBP eCLIP13.7□□□□□ -0.22
PNKP-217ENST00000625216 IGSF9Q9P2J2 1179 aa13.7□□□□□ -0.22
PNKP-217ENST00000625216 UBQLN1Q9UMX0 589 aaKnown RBP13.7□□□□□ -0.22
PNKP-217ENST00000625216 TRIOO75962 3097 aa13.7□□□□□ -0.22
PNKP-217ENST00000625216 CLUHO75153 1309 aa13.69□□□□□ -0.22
PNKP-217ENST00000625216 SMTNL1A8MU46 457 aa13.69□□□□□ -0.22
PNKP-217ENST00000625216 GOLGA6L19H0YKK7 550 aa13.69□□□□□ -0.22
PNKP-217ENST00000625216 PSMA7O14818 248 aa13.69□□□□□ -0.22
PNKP-217ENST00000625216 XYLBO75191 536 aa13.69□□□□□ -0.22
PNKP-217ENST00000625216 CXCL8P10145 99 aa13.69□□□□□ -0.22
PNKP-217ENST00000625216 MYBP10242 640 aa13.69□□□□□ -0.22
PNKP-217ENST00000625216 IGFBP6P24592 240 aaPredicted RBP13.69□□□□□ -0.22
PNKP-217ENST00000625216 TKTP29401 623 aaKnown RBP13.69□□□□□ -0.22
PNKP-217ENST00000625216 NMT1P30419 496 aaKnown RBP13.69□□□□□ -0.22
PNKP-217ENST00000625216 LRPAP1P30533 357 aa13.69□□□□□ -0.22
PNKP-217ENST00000625216 MRPL58Q14197 206 aaKnown RBP13.69□□□□□ -0.22
PNKP-217ENST00000625216 PPM1LQ5SGD2 360 aa13.69□□□□□ -0.22
PNKP-217ENST00000625216 SLC8B1Q6J4K2 584 aa13.69□□□□□ -0.22
PNKP-217ENST00000625216 TTI2Q6NXR4 508 aa13.69□□□□□ -0.22
PNKP-217ENST00000625216 EPM2AIP1Q7L775 607 aaPredicted RBP13.69□□□□□ -0.22
PNKP-217ENST00000625216 SUGP1Q8IWZ8 645 aaKnown RBP13.69□□□□□ -0.22
PNKP-217ENST00000625216 FAM122AQ96E09 287 aa13.69□□□□□ -0.22
PNKP-217ENST00000625216 KIF12Q96FN5 646 aa13.69□□□□□ -0.22
PNKP-217ENST00000625216 ASIC4Q96FT7 647 aa13.69□□□□□ -0.22
PNKP-217ENST00000625216 SUSD3Q96L08 255 aa13.69□□□□□ -0.22
PNKP-217ENST00000625216 MSTO1Q9BUK6 570 aa13.69□□□□□ -0.22
PNKP-217ENST00000625216 OLFML3Q9NRN5 406 aa13.69□□□□□ -0.22
PNKP-217ENST00000625216 EPS15L1Q9UBC2 864 aa13.69□□□□□ -0.22
PNKP-217ENST00000625216 RWDD2AQ9UIY3 292 aa13.69□□□□□ -0.22
PNKP-217ENST00000625216 CPSF3Q9UKF6 684 aaKnown RBP13.69□□□□□ -0.22
PNKP-217ENST00000625216 PCDHB13Q9Y5F0 798 aa13.69□□□□□ -0.22
PNKP-217ENST00000625216 CDY1Q9Y6F8 540 aa13.69□□□□□ -0.22
PNKP-217ENST00000625216 STYXL1Q9Y6J8 313 aa13.69□□□□□ -0.22
PNKP-217ENST00000625216 ZFP37Q9Y6Q3 630 aaPredicted RBP13.69□□□□□ -0.22
PNKP-217ENST00000625216 LACTBL1A8MY62 500 aa13.68□□□□□ -0.22
PNKP-217ENST00000625216 I3L4J1 428 aa13.68□□□□□ -0.22
PNKP-217ENST00000625216 ADAM12O43184 909 aa13.68□□□□□ -0.22
PNKP-217ENST00000625216 FAM189A1O60320 539 aa13.68□□□□□ -0.22
PNKP-217ENST00000625216 C8AP07357 584 aa13.68□□□□□ -0.22
PNKP-217ENST00000625216 CCNE1P24864 410 aa13.68□□□□□ -0.22
PNKP-217ENST00000625216 GBP2P32456 591 aaPredicted RBP13.68□□□□□ -0.22
PNKP-217ENST00000625216 PLA2G5P39877 138 aa13.68□□□□□ -0.22
PNKP-217ENST00000625216 PPP1R2P41236 205 aa13.68□□□□□ -0.22
PNKP-217ENST00000625216 TDGQ13569 410 aa13.68□□□□□ -0.22
PNKP-217ENST00000625216 STIM1Q13586 685 aa13.68□□□□□ -0.22
PNKP-217ENST00000625216 ALCAMQ13740 583 aa13.68□□□□□ -0.22
PNKP-217ENST00000625216 ENOX2Q16206 610 aaKnown RBP13.68□□□□□ -0.22
PNKP-217ENST00000625216 ZC2HC1CQ53FD0 456 aaPredicted RBP13.68□□□□□ -0.22
PNKP-217ENST00000625216 VARS2Q5ST30 1063 aaKnown RBP13.68□□□□□ -0.22
PNKP-217ENST00000625216 SPATA1Q5VX52 437 aa13.68□□□□□ -0.22
PNKP-217ENST00000625216 FBXL6Q8N531 539 aa13.68□□□□□ -0.22
PNKP-217ENST00000625216 ZNF461Q8TAF7 563 aa13.68□□□□□ -0.22
PNKP-217ENST00000625216 FEZF2Q8TBJ5 459 aa13.68□□□□□ -0.22
Retrieved 100 of 20,778 RNA–protein pairs in 30.3 ms