RNA–Protein interactions for RNA: ENST00000623461.3

VCL-206, Transcript of vinculin, humanhuman

TSL 1 (best)

Gene VCL, Length 7,995 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VCL-206ENST00000623461 GSG1L2A8MUP6 293 aa9.33□□□□□ -0.92
VCL-206ENST00000623461 NBPF26B4DH59 902 aa9.33□□□□□ -0.92
VCL-206ENST00000623461 GCLCP48506 637 aaPredicted RBP9.33□□□□□ -0.92
VCL-206ENST00000623461 RIPK1Q13546 671 aa9.33□□□□□ -0.92
VCL-206ENST00000623461 C16orf72Q14CZ0 275 aa9.33□□□□□ -0.92
VCL-206ENST00000623461 FASTKD1Q53R41 847 aaKnown RBP9.33□□□□□ -0.92
VCL-206ENST00000623461 PPP6R3Q5H9R7 873 aaPredicted RBP9.33□□□□□ -0.92
VCL-206ENST00000623461 ZFP1Q6P2D0 407 aa9.33□□□□□ -0.92
VCL-206ENST00000623461 MIGA2Q7L4E1 593 aa9.33□□□□□ -0.92
VCL-206ENST00000623461 NBPF15Q8N660 670 aa9.33□□□□□ -0.92
VCL-206ENST00000623461 MCPH1Q8NEM0 835 aa9.33□□□□□ -0.92
VCL-206ENST00000623461 TMEM47Q9BQJ4 181 aa9.33□□□□□ -0.92
VCL-206ENST00000623461 SLC12A6Q9UHW9 1150 aa9.33□□□□□ -0.92
VCL-206ENST00000623461 SERPINB13Q9UIV8 391 aa9.33□□□□□ -0.92
VCL-206ENST00000623461 NAGPAQ9UK23 515 aa9.33□□□□□ -0.92
VCL-206ENST00000623461 CYP26A1O43174 497 aa9.33□□□□□ -0.92
VCL-206ENST00000623461 PSMD3O43242 534 aa9.33□□□□□ -0.92
VCL-206ENST00000623461 VCAM1P19320 739 aa9.33□□□□□ -0.92
VCL-206ENST00000623461 IL6STP40189 918 aaPredicted RBP9.33□□□□□ -0.92
VCL-206ENST00000623461 SYCP2LQ5T4T6 812 aa9.33□□□□□ -0.92
VCL-206ENST00000623461 DPY19L2Q6NUT2 758 aa9.33□□□□□ -0.92
VCL-206ENST00000623461 PADI6Q6TGC4 694 aa9.33□□□□□ -0.92
VCL-206ENST00000623461 ZNF662Q6ZS27 426 aa9.33□□□□□ -0.92
VCL-206ENST00000623461 TRIM69Q86WT6 500 aa9.33□□□□□ -0.92
VCL-206ENST00000623461 TIPINQ9BVW5 301 aa9.33□□□□□ -0.92
VCL-206ENST00000623461 RPF1Q9H9Y2 349 aaKnown RBP9.33□□□□□ -0.92
VCL-206ENST00000623461 TUFT1Q9NNX1 390 aa9.33□□□□□ -0.92
VCL-206ENST00000623461 RABGEF1Q9UJ41 708 aa9.33□□□□□ -0.92
VCL-206ENST00000623461 DUSP10Q9Y6W6 482 aa9.33□□□□□ -0.92
VCL-206ENST00000623461 CD44P16070 742 aaKnown RBP9.33□□□□□ -0.92
VCL-206ENST00000623461 VCPP55072 806 aaKnown RBP9.33□□□□□ -0.92
VCL-206ENST00000623461 NT5DC1Q5TFE4 455 aa9.33□□□□□ -0.92
VCL-206ENST00000623461 BNC2Q6ZN30 1099 aaPredicted RBP9.33□□□□□ -0.92
VCL-206ENST00000623461 ARMCX2Q7L311 632 aa9.33□□□□□ -0.92
VCL-206ENST00000623461 LUZP2Q86TE4 346 aa9.33□□□□□ -0.92
VCL-206ENST00000623461 ZNF677Q86XU0 584 aa9.33□□□□□ -0.92
VCL-206ENST00000623461 CDC42EP4Q9H3Q1 356 aaKnown RBP9.33□□□□□ -0.92
VCL-206ENST00000623461 EFCAB1Q9HAE3 211 aa9.33□□□□□ -0.92
VCL-206ENST00000623461 HACD3Q9P035 362 aa9.33□□□□□ -0.92
VCL-206ENST00000623461 ANKRD26Q9UPS8 1709 aa9.33□□□□□ -0.92
VCL-206ENST00000623461 F8W8V4 182 aa9.33□□□□□ -0.92
VCL-206ENST00000623461 K7ERI5 159 aa9.33□□□□□ -0.92
VCL-206ENST00000623461 RIPK2O43353 540 aa9.33□□□□□ -0.92
VCL-206ENST00000623461 ASNA1O43681 348 aa9.33□□□□□ -0.92
VCL-206ENST00000623461 EXT2Q93063 718 aa9.33□□□□□ -0.92
VCL-206ENST00000623461 CEP95Q96GE4 821 aa9.33□□□□□ -0.92
VCL-206ENST00000623461 MAGED4Q96JG8 741 aa9.33□□□□□ -0.92
VCL-206ENST00000623461 PAIP1Q9H074 479 aaKnown RBP9.33□□□□□ -0.92
VCL-206ENST00000623461 MPP6Q9NZW5 540 aa9.33□□□□□ -0.92
VCL-206ENST00000623461 C4BPBP20851 252 aa9.33□□□□□ -0.92
VCL-206ENST00000623461 NUDT2P50583 147 aa9.33□□□□□ -0.92
VCL-206ENST00000623461 POU5F1BQ06416 359 aa9.33□□□□□ -0.92
VCL-206ENST00000623461 DYNLL2Q96FJ2 89 aa9.33□□□□□ -0.92
VCL-206ENST00000623461 GINS2Q9Y248 185 aa9.33□□□□□ -0.92
VCL-206ENST00000623461 MADDQ8WXG6 1647 aa9.33□□□□□ -0.92
VCL-206ENST00000623461 NRKQ7Z2Y5 1582 aa9.33□□□□□ -0.92
VCL-206ENST00000623461 XDHP47989 1333 aa9.33□□□□□ -0.92
VCL-206ENST00000623461 TMEM247A6NEH6 219 aa9.33□□□□□ -0.92
VCL-206ENST00000623461 PSMG1O95456 288 aa9.33□□□□□ -0.92
VCL-206ENST00000623461 PSMA4P25789 261 aaKnown RBP9.33□□□□□ -0.92
VCL-206ENST00000623461 UGP2Q16851 508 aa9.33□□□□□ -0.92
VCL-206ENST00000623461 EP400NLQ6ZTU2 488 aa9.33□□□□□ -0.92
VCL-206ENST00000623461 CNPY3Q9BT09 278 aa9.33□□□□□ -0.92
VCL-206ENST00000623461 LACRTQ9GZZ8 138 aa9.33□□□□□ -0.92
VCL-206ENST00000623461 IQGAP1P46940 1657 aa9.32□□□□□ -0.92
VCL-206ENST00000623461 BCL10O95999 233 aa9.32□□□□□ -0.92
VCL-206ENST00000623461 PLEKP08567 350 aaPredicted RBP9.32□□□□□ -0.92
VCL-206ENST00000623461 SKIV2L2P42285 1042 aaKnown RBP9.32□□□□□ -0.92
VCL-206ENST00000623461 TSHZ1Q6ZSZ6 1077 aa9.32□□□□□ -0.92
VCL-206ENST00000623461 GDPD5Q8WTR4 605 aa9.32□□□□□ -0.92
VCL-206ENST00000623461 CD209Q9NNX6 404 aa9.32□□□□□ -0.92
VCL-206ENST00000623461 WDR35Q9P2L0 1181 aa9.32□□□□□ -0.92
VCL-206ENST00000623461 TMCO1Q9UM00 188 aa9.32□□□□□ -0.92
VCL-206ENST00000623461 MROH7Q68CQ1 1323 aa9.32□□□□□ -0.92
VCL-206ENST00000623461 PRAMEF22A3QJZ6 481 aa9.32□□□□□ -0.92
VCL-206ENST00000623461 KIAA0391O15091 583 aaKnown RBP9.32□□□□□ -0.92
VCL-206ENST00000623461 CBFA2T3O75081 653 aa9.32□□□□□ -0.92
VCL-206ENST00000623461 GSNP06396 782 aa9.32□□□□□ -0.92
VCL-206ENST00000623461 SDC4P31431 198 aa9.32□□□□□ -0.92
VCL-206ENST00000623461 SPRP35270 261 aaPredicted RBP9.32□□□□□ -0.92
VCL-206ENST00000623461 SNRPFP62306 86 aaKnown RBP9.32□□□□□ -0.92
VCL-206ENST00000623461 IMPG1Q17R60 797 aa9.32□□□□□ -0.92
VCL-206ENST00000623461 EAPPQ56P03 285 aaPredicted RBP9.32□□□□□ -0.92
VCL-206ENST00000623461 ZC3H12BQ5HYM0 836 aaKnown RBP9.32□□□□□ -0.92
VCL-206ENST00000623461 OLFML1Q6UWY5 402 aa9.32□□□□□ -0.92
VCL-206ENST00000623461 FAM160B2Q86V87 743 aa9.32□□□□□ -0.92
VCL-206ENST00000623461 DDX17Q92841 729 aaKnown RBP9.32□□□□□ -0.92
VCL-206ENST00000623461 MYMKA6NI61 221 aa9.32□□□□□ -0.92
VCL-206ENST00000623461 NEMP1O14524 444 aa9.32□□□□□ -0.92
VCL-206ENST00000623461 TTKP33981 857 aa9.32□□□□□ -0.92
VCL-206ENST00000623461 OVGP1Q12889 678 aa9.32□□□□□ -0.92
VCL-206ENST00000623461 IYDQ6PHW0 289 aa9.32□□□□□ -0.92
VCL-206ENST00000623461 SKA2Q8WVK7 121 aaPredicted RBP9.32□□□□□ -0.92
VCL-206ENST00000623461 LENG1Q96BZ8 264 aaPredicted RBP9.32□□□□□ -0.92
VCL-206ENST00000623461 PSTPIP1O43586 416 aa9.32□□□□□ -0.92
VCL-206ENST00000623461 GLRA3O75311 464 aa9.32□□□□□ -0.92
VCL-206ENST00000623461 KHDRBS1Q07666 443 aaKnown RBP eCLIP9.32□□□□□ -0.924e-7■■■■□ 20.3
VCL-206ENST00000623461 DDIASQ8IXT1 998 aa9.32□□□□□ -0.92
VCL-206ENST00000623461 SRBD1Q8N5C6 995 aaKnown RBP9.32□□□□□ -0.92
VCL-206ENST00000623461 MYLK2Q9H1R3 596 aa9.32□□□□□ -0.92
Retrieved 100 of 20,778 RNA–protein pairs in 22 ms