RNA–Protein interactions for RNA: ENST00000622668.4

HDAC9-229, Transcript of histone deacetylase 9, humanhuman

TSL 2 BASIC

Gene HDAC9, Length 4,279 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC9-229ENST00000622668 SCN11AQ9UI33 1791 aa9.64□□□□□ -0.87
HDAC9-229ENST00000622668 DLG5Q8TDM6 1919 aa9.63□□□□□ -0.87
HDAC9-229ENST00000622668 RIOK3O14730 519 aaKnown RBP9.63□□□□□ -0.87
HDAC9-229ENST00000622668 SCAMP3O14828 347 aaKnown RBP9.63□□□□□ -0.87
HDAC9-229ENST00000622668 ARF4P18085 180 aaPredicted RBP9.63□□□□□ -0.87
HDAC9-229ENST00000622668 ARHGAP1Q07960 439 aa9.63□□□□□ -0.87
HDAC9-229ENST00000622668 EFEMP1Q12805 493 aa9.63□□□□□ -0.87
HDAC9-229ENST00000622668 EDRF1Q3B7T1 1238 aa9.63□□□□□ -0.87
HDAC9-229ENST00000622668 IL31Q6EBC2 164 aa9.63□□□□□ -0.87
HDAC9-229ENST00000622668 CTAGE3PQ8IX95 158 aa9.63□□□□□ -0.87
HDAC9-229ENST00000622668 GPR161Q8N6U8 529 aaKnown RBP9.63□□□□□ -0.87
HDAC9-229ENST00000622668 SLC7A14Q8TBB6 771 aa9.63□□□□□ -0.87
HDAC9-229ENST00000622668 SPIRE2Q8WWL2 714 aa9.63□□□□□ -0.87
HDAC9-229ENST00000622668 SREK1Q8WXA9 508 aaKnown RBP9.63□□□□□ -0.87
HDAC9-229ENST00000622668 GTF2IRD1Q9UHL9 959 aa9.63□□□□□ -0.87
HDAC9-229ENST00000622668 FEZ2Q9UHY8 353 aaPredicted RBP9.63□□□□□ -0.87
HDAC9-229ENST00000622668 IPPQ9Y573 584 aa9.63□□□□□ -0.87
HDAC9-229ENST00000622668 PCDHA2Q9Y5H9 948 aa9.63□□□□□ -0.87
HDAC9-229ENST00000622668 PFDN6O15212 129 aa9.63□□□□□ -0.87
HDAC9-229ENST00000622668 ACTN4O43707 911 aaKnown RBP9.63□□□□□ -0.87
HDAC9-229ENST00000622668 PDGFRAP16234 1089 aa9.63□□□□□ -0.87
HDAC9-229ENST00000622668 MCM3P25205 808 aa9.63□□□□□ -0.87
HDAC9-229ENST00000622668 EEF1DP3Q658K8 133 aa9.63□□□□□ -0.87
HDAC9-229ENST00000622668 GDF6Q6KF10 455 aaPredicted RBP9.63□□□□□ -0.87
HDAC9-229ENST00000622668 CEP120Q8N960 986 aa9.63□□□□□ -0.87
HDAC9-229ENST00000622668 ZBED3Q96IU2 234 aaPredicted RBP9.63□□□□□ -0.87
HDAC9-229ENST00000622668 TSEN34Q9BSV6 310 aaKnown RBP9.63□□□□□ -0.87
HDAC9-229ENST00000622668 KCNMB3Q9NPA1 279 aa9.63□□□□□ -0.87
HDAC9-229ENST00000622668 SAMD15Q9P1V8 674 aa9.63□□□□□ -0.87
HDAC9-229ENST00000622668 DOLKQ9UPQ8 538 aa9.63□□□□□ -0.87
HDAC9-229ENST00000622668 MAD1L1Q9Y6D9 718 aa9.63□□□□□ -0.87
HDAC9-229ENST00000622668 KPNA7A9QM74 516 aa9.63□□□□□ -0.87
HDAC9-229ENST00000622668 CKBP12277 381 aa9.63□□□□□ -0.87
HDAC9-229ENST00000622668 PBX3P40426 434 aa9.63□□□□□ -0.87
HDAC9-229ENST00000622668 RBL2Q08999 1139 aa9.63□□□□□ -0.87
HDAC9-229ENST00000622668 SEPT6Q14141 434 aa9.63□□□□□ -0.87
HDAC9-229ENST00000622668 SNX19Q92543 992 aa9.63□□□□□ -0.87
HDAC9-229ENST00000622668 PAIP2Q9BPZ3 127 aaKnown RBP9.63□□□□□ -0.87
HDAC9-229ENST00000622668 KRT82Q9NSB4 513 aa9.63□□□□□ -0.87
HDAC9-229ENST00000622668 SPTLC3Q9NUV7 552 aa9.63□□□□□ -0.87
HDAC9-229ENST00000622668 WBP1LQ9NX94 342 aa9.63□□□□□ -0.87
HDAC9-229ENST00000622668 C4AP0C0L4 1744 aa9.63□□□□□ -0.87
HDAC9-229ENST00000622668 MCF2LO15068 1137 aa9.62□□□□□ -0.87
HDAC9-229ENST00000622668 SAT1P21673 171 aa9.62□□□□□ -0.87
HDAC9-229ENST00000622668 ICAM3P32942 547 aa9.62□□□□□ -0.87
HDAC9-229ENST00000622668 SULT1E1P49888 294 aa9.62□□□□□ -0.87
HDAC9-229ENST00000622668 MAP3K7CLP57077 242 aa9.62□□□□□ -0.87
HDAC9-229ENST00000622668 SNRPFP62306 86 aaKnown RBP9.62□□□□□ -0.87
HDAC9-229ENST00000622668 PURAQ00577 322 aaKnown RBP9.62□□□□□ -0.87
HDAC9-229ENST00000622668 ADSSL1Q8N142 457 aa9.62□□□□□ -0.87
HDAC9-229ENST00000622668 TMEM117Q9H0C3 514 aa9.62□□□□□ -0.87
HDAC9-229ENST00000622668 ASAH2Q9NR71 780 aa9.62□□□□□ -0.87
HDAC9-229ENST00000622668 GTF3C4Q9UKN8 822 aa9.62□□□□□ -0.87
HDAC9-229ENST00000622668 CNTNAP2Q9UHC6 1331 aa9.62□□□□□ -0.87
HDAC9-229ENST00000622668 RGPD1P0DJD0 1748 aa9.62□□□□□ -0.87
HDAC9-229ENST00000622668 GIPC1O14908 333 aa9.62□□□□□ -0.87
HDAC9-229ENST00000622668 KRT3P12035 628 aa9.62□□□□□ -0.87
HDAC9-229ENST00000622668 GTF2H1P32780 548 aa9.62□□□□□ -0.87
HDAC9-229ENST00000622668 MAN1A1P33908 653 aa9.62□□□□□ -0.87
HDAC9-229ENST00000622668 RAP1GAPP47736 663 aa9.62□□□□□ -0.87
HDAC9-229ENST00000622668 GLUD2P49448 558 aa9.62□□□□□ -0.87
HDAC9-229ENST00000622668 ZNF235Q14590 738 aa9.62□□□□□ -0.87
HDAC9-229ENST00000622668 JADE1Q6IE81 842 aa9.62□□□□□ -0.87
HDAC9-229ENST00000622668 KCNK18Q7Z418 384 aa9.62□□□□□ -0.87
HDAC9-229ENST00000622668 ZBTB9Q96C00 473 aa9.62□□□□□ -0.87
HDAC9-229ENST00000622668 PLEKHA5Q9HAU0 1116 aa9.62□□□□□ -0.87
HDAC9-229ENST00000622668 IMPACTQ9P2X3 320 aa9.62□□□□□ -0.87
HDAC9-229ENST00000622668 RWDD3Q9Y3V2 267 aa9.62□□□□□ -0.87
HDAC9-229ENST00000622668 ABHD14A-ACY1A0A1B0GW23 586 aa9.62□□□□□ -0.87
HDAC9-229ENST00000622668 SLC12A8A0AV02 714 aa9.62□□□□□ -0.87
HDAC9-229ENST00000622668 LGALS16A8MUM7 142 aa9.62□□□□□ -0.87
HDAC9-229ENST00000622668 H0Y626 953 aa9.62□□□□□ -0.87
HDAC9-229ENST00000622668 SLC16A3O15427 465 aaKnown RBP9.62□□□□□ -0.87
HDAC9-229ENST00000622668 SERPING1P05155 500 aa9.62□□□□□ -0.87
HDAC9-229ENST00000622668 BRD2P25440 801 aaKnown RBP9.62□□□□□ -0.87
HDAC9-229ENST00000622668 BRCC3P46736 316 aa9.62□□□□□ -0.87
HDAC9-229ENST00000622668 SLC11A2P49281 568 aa9.62□□□□□ -0.87
HDAC9-229ENST00000622668 DEUP1Q05D60 604 aa9.62□□□□□ -0.87
HDAC9-229ENST00000622668 DPYDQ12882 1025 aa9.62□□□□□ -0.87
HDAC9-229ENST00000622668 ANKS3Q6ZW76 656 aa9.62□□□□□ -0.87
HDAC9-229ENST00000622668 NPAS4Q8IUM7 802 aa9.62□□□□□ -0.87
HDAC9-229ENST00000622668 FBXL16Q8N461 479 aa9.62□□□□□ -0.87
HDAC9-229ENST00000622668 RPRD1AQ96P16 312 aaPredicted RBP9.62□□□□□ -0.87
HDAC9-229ENST00000622668 EPAS1Q99814 870 aa9.62□□□□□ -0.87
HDAC9-229ENST00000622668 TCF25Q9BQ70 676 aa9.62□□□□□ -0.87
HDAC9-229ENST00000622668 CDT1Q9H211 546 aa9.62□□□□□ -0.87
HDAC9-229ENST00000622668 R3HDMLQ9H3Y0 253 aa9.62□□□□□ -0.87
HDAC9-229ENST00000622668 CHST12Q9NRB3 414 aa9.62□□□□□ -0.87
HDAC9-229ENST00000622668 DDIT4Q9NX09 232 aa9.62□□□□□ -0.87
HDAC9-229ENST00000622668 SGK1O00141 431 aa9.62□□□□□ -0.87
HDAC9-229ENST00000622668 GJA9P57773 515 aa9.62□□□□□ -0.87
HDAC9-229ENST00000622668 TUSC3Q13454 348 aa9.62□□□□□ -0.87
HDAC9-229ENST00000622668 IRF5Q13568 498 aa9.62□□□□□ -0.87
HDAC9-229ENST00000622668 COL9A3Q14050 684 aaPredicted RBP9.62□□□□□ -0.87
HDAC9-229ENST00000622668 GLIPR1L2Q4G1C9 344 aa9.62□□□□□ -0.87
HDAC9-229ENST00000622668 DARS2Q6PI48 645 aaKnown RBP9.62□□□□□ -0.87
HDAC9-229ENST00000622668 SLC30A5Q8TAD4 765 aa9.62□□□□□ -0.87
HDAC9-229ENST00000622668 ERLEC1Q96DZ1 483 aa9.62□□□□□ -0.87
HDAC9-229ENST00000622668 NAPGQ99747 312 aaPredicted RBP9.62□□□□□ -0.87
HDAC9-229ENST00000622668 MKNK1Q9BUB5 465 aa9.62□□□□□ -0.87
Retrieved 100 of 20,778 RNA–protein pairs in 27.2 ms