RNA–Protein interactions for RNA: ENST00000621245.4

CPNE3-210, Transcript of copine 3, humanhuman

TSL 5

Gene CPNE3, Length 581 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPNE3-210ENST00000621245 RTP3Q9BQQ7 232 aa12.48□□□□□ -0.41
CPNE3-210ENST00000621245 TIPINQ9BVW5 301 aa12.48□□□□□ -0.41
CPNE3-210ENST00000621245 C17orf75Q9HAS0 396 aa12.48□□□□□ -0.41
CPNE3-210ENST00000621245 SLC38A7Q9NVC3 462 aa12.48□□□□□ -0.41
CPNE3-210ENST00000621245 SMC3Q9UQE7 1217 aa12.48□□□□□ -0.41
CPNE3-210ENST00000621245 INSL5Q9Y5Q6 135 aa12.48□□□□□ -0.41
CPNE3-210ENST00000621245 CACNA1AO00555 2505 aa12.48□□□□□ -0.41
CPNE3-210ENST00000621245 CEP250Q9BV73 2442 aa12.47□□□□□ -0.41
CPNE3-210ENST00000621245 LACTBL1A8MY62 500 aa12.47□□□□□ -0.41
CPNE3-210ENST00000621245 ANKRD63C9JTQ0 380 aa12.47□□□□□ -0.41
CPNE3-210ENST00000621245 K7ENM7 598 aa12.47□□□□□ -0.41
CPNE3-210ENST00000621245 SYN3O14994 580 aa12.47□□□□□ -0.41
CPNE3-210ENST00000621245 CLDN3O15551 220 aa12.47□□□□□ -0.41
CPNE3-210ENST00000621245 GJA1P17302 382 aa12.47□□□□□ -0.41
CPNE3-210ENST00000621245 NMT1P30419 496 aaKnown RBP12.47□□□□□ -0.41
CPNE3-210ENST00000621245 MCM4P33991 863 aa12.47□□□□□ -0.41
CPNE3-210ENST00000621245 ZBTB6Q15916 424 aa12.47□□□□□ -0.41
CPNE3-210ENST00000621245 UVSSAQ2YD98 709 aa12.47□□□□□ -0.41
CPNE3-210ENST00000621245 CTXN3Q4LDR2 81 aa12.47□□□□□ -0.41
CPNE3-210ENST00000621245 ARL6IP4Q66PJ3 421 aaKnown RBP12.47□□□□□ -0.41
CPNE3-210ENST00000621245 TANGO2Q6ICL3 276 aa12.47□□□□□ -0.41
CPNE3-210ENST00000621245 FAM173BQ6P4H8 233 aa12.47□□□□□ -0.41
CPNE3-210ENST00000621245 RNF19BQ6ZMZ0 732 aa12.47□□□□□ -0.41
CPNE3-210ENST00000621245 HAUS6Q7Z4H7 955 aa12.47□□□□□ -0.41
CPNE3-210ENST00000621245 APBB1IPQ7Z5R6 666 aaPredicted RBP12.47□□□□□ -0.41
CPNE3-210ENST00000621245 MAML2Q8IZL2 1156 aaPredicted RBP12.47□□□□□ -0.41
CPNE3-210ENST00000621245 TTC9BQ8N6N2 239 aa12.47□□□□□ -0.41
CPNE3-210ENST00000621245 ZNF461Q8TAF7 563 aa12.47□□□□□ -0.41
CPNE3-210ENST00000621245 BICD1Q96G01 975 aa12.47□□□□□ -0.41
CPNE3-210ENST00000621245 ZSWIM3Q96MP5 696 aa12.47□□□□□ -0.41
CPNE3-210ENST00000621245 TMEM209Q96SK2 561 aa12.47□□□□□ -0.41
CPNE3-210ENST00000621245 CORO1BQ9BR76 489 aa12.47□□□□□ -0.41
CPNE3-210ENST00000621245 CYP4F11Q9HBI6 524 aa12.47□□□□□ -0.41
CPNE3-210ENST00000621245 CEP72Q9P209 647 aa12.47□□□□□ -0.41
CPNE3-210ENST00000621245 MRPS23Q9Y3D9 190 aaKnown RBP12.47□□□□□ -0.41
CPNE3-210ENST00000621245 NUB1Q9Y5A7 615 aa12.47□□□□□ -0.41
CPNE3-210ENST00000621245 CLIC4Q9Y696 253 aa12.47□□□□□ -0.41
CPNE3-210ENST00000621245 ZNF638Q14966 1978 aaKnown RBP12.47□□□□□ -0.41
CPNE3-210ENST00000621245 PRRG1O14668 218 aa12.46□□□□□ -0.41
CPNE3-210ENST00000621245 SPTLC1O15269 473 aa12.46□□□□□ -0.41
CPNE3-210ENST00000621245 TRAPPC3O43617 180 aa12.46□□□□□ -0.41
CPNE3-210ENST00000621245 CENPBP07199 599 aaPredicted RBP12.46□□□□□ -0.41
CPNE3-210ENST00000621245 NFICP08651 508 aa12.46□□□□□ -0.41
CPNE3-210ENST00000621245 ATF2P15336 505 aa12.46□□□□□ -0.41
CPNE3-210ENST00000621245 RFX1P22670 979 aa12.46□□□□□ -0.41
CPNE3-210ENST00000621245 RPL9P32969 192 aaKnown RBP12.46□□□□□ -0.41
CPNE3-210ENST00000621245 MATR3P43243 847 aaKnown RBP eCLIP12.46□□□□□ -0.41
CPNE3-210ENST00000621245 ZNF131P52739 623 aa12.46□□□□□ -0.41
CPNE3-210ENST00000621245 STARD6P59095 220 aa12.46□□□□□ -0.41
CPNE3-210ENST00000621245 ADCY1Q08828 1119 aa12.46□□□□□ -0.41
CPNE3-210ENST00000621245 GRM2Q14416 872 aa12.46□□□□□ -0.41
CPNE3-210ENST00000621245 SF3A1Q15459 793 aaKnown RBP12.46□□□□□ -0.41
CPNE3-210ENST00000621245 MLF2Q15773 248 aaPredicted RBP12.46□□□□□ -0.41
CPNE3-210ENST00000621245 ZC2HC1CQ53FD0 456 aaPredicted RBP12.46□□□□□ -0.41
CPNE3-210ENST00000621245 LARP1BQ659C4 914 aaKnown RBP12.46□□□□□ -0.41
CPNE3-210ENST00000621245 PHLDB3Q6NSJ2 640 aa12.46□□□□□ -0.41
CPNE3-210ENST00000621245 RAD54LQ92698 747 aa12.46□□□□□ -0.41
CPNE3-210ENST00000621245 FAM84AQ96KN4 292 aa12.46□□□□□ -0.41
CPNE3-210ENST00000621245 PGLYRP2Q96PD5 576 aa12.46□□□□□ -0.41
CPNE3-210ENST00000621245 DDX23Q9BUQ8 820 aaKnown RBP12.46□□□□□ -0.41
CPNE3-210ENST00000621245 IRF2BPLQ9H1B7 796 aa12.46□□□□□ -0.41
CPNE3-210ENST00000621245 KCNH3Q9ULD8 1083 aa12.46□□□□□ -0.41
CPNE3-210ENST00000621245 TBX20Q9UMR3 447 aa12.46□□□□□ -0.41
CPNE3-210ENST00000621245 KIF3AQ9Y496 699 aa12.46□□□□□ -0.41
CPNE3-210ENST00000621245 ZFP37Q9Y6Q3 630 aaPredicted RBP12.46□□□□□ -0.41
CPNE3-210ENST00000621245 VPS37CA5D8V6 355 aaPredicted RBP12.45□□□□□ -0.42
CPNE3-210ENST00000621245 M0QZQ0 153 aa12.45□□□□□ -0.42
CPNE3-210ENST00000621245 HNRNPDLO14979 420 aaKnown RBP12.45□□□□□ -0.42
CPNE3-210ENST00000621245 SOAT2O75908 522 aa12.45□□□□□ -0.42
CPNE3-210ENST00000621245 PIGRP01833 764 aa12.45□□□□□ -0.42
CPNE3-210ENST00000621245 LRG1P02750 347 aa12.45□□□□□ -0.42
CPNE3-210ENST00000621245 CLTAP09496 248 aa12.45□□□□□ -0.42
CPNE3-210ENST00000621245 TARSP26639 723 aaKnown RBP12.45□□□□□ -0.42
CPNE3-210ENST00000621245 LRPAP1P30533 357 aa12.45□□□□□ -0.42
CPNE3-210ENST00000621245 AARSP49588 968 aaKnown RBP eCLIP12.45□□□□□ -0.42
CPNE3-210ENST00000621245 LIG4P49917 911 aa12.45□□□□□ -0.42
CPNE3-210ENST00000621245 SMTNP53814 917 aa12.45□□□□□ -0.42
CPNE3-210ENST00000621245 WNT7BP56706 349 aa12.45□□□□□ -0.42
CPNE3-210ENST00000621245 TWF1Q12792 350 aa12.45□□□□□ -0.42
CPNE3-210ENST00000621245 PTPAQ15257 358 aa12.45□□□□□ -0.42
CPNE3-210ENST00000621245 FAM78AQ5JUQ0 283 aa12.45□□□□□ -0.42
CPNE3-210ENST00000621245 SCARA3Q6AZY7 606 aa12.45□□□□□ -0.42
CPNE3-210ENST00000621245 JADE1Q6IE81 842 aa12.45□□□□□ -0.42
CPNE3-210ENST00000621245 ZNF280DQ6N043 979 aa12.45□□□□□ -0.42
CPNE3-210ENST00000621245 MTSS1LQ765P7 747 aa12.45□□□□□ -0.42
CPNE3-210ENST00000621245 TCEAL8Q8IYN2 117 aa12.45□□□□□ -0.42
CPNE3-210ENST00000621245 MYCT1Q8N699 235 aa12.45□□□□□ -0.42
CPNE3-210ENST00000621245 ZSWIM2Q8NEG5 633 aa12.45□□□□□ -0.42
CPNE3-210ENST00000621245 NKD2Q969F2 451 aaPredicted RBP12.45□□□□□ -0.42
CPNE3-210ENST00000621245 RSPRY1Q96DX4 576 aa12.45□□□□□ -0.42
CPNE3-210ENST00000621245 EPSTI1Q96J88 318 aa12.45□□□□□ -0.42
CPNE3-210ENST00000621245 AK8Q96MA6 479 aa12.45□□□□□ -0.42
CPNE3-210ENST00000621245 ZHX3Q9H4I2 956 aa12.45□□□□□ -0.42
CPNE3-210ENST00000621245 ODF2LQ9ULJ1 636 aa12.45□□□□□ -0.42
CPNE3-210ENST00000621245 SIT1Q9Y3P8 196 aa12.45□□□□□ -0.42
CPNE3-210ENST00000621245 YIPF1Q9Y548 306 aa12.45□□□□□ -0.42
CPNE3-210ENST00000621245 FAM13AO94988 1023 aa12.44□□□□□ -0.42
CPNE3-210ENST00000621245 SP9P0CG40 484 aa12.44□□□□□ -0.42
CPNE3-210ENST00000621245 CPB1P15086 417 aa12.44□□□□□ -0.42
CPNE3-210ENST00000621245 MARCKSP29966 332 aaPredicted RBP12.44□□□□□ -0.42
Retrieved 100 of 20,778 RNA–protein pairs in 24.1 ms