RNA–Protein interactions for RNA: ENST00000611481.1

LINC00540-201, long intergenic non-protein coding RNA 540, humanhuman

TSL 4

Gene LINC00540, Length 588 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00540-201ENST00000611481 GADD45GIP1Q8TAE8 222 aaPredicted RBP5.46□□□□□ -1.54
LINC00540-201ENST00000611481 SH3RF2Q8TEC5 729 aa5.46□□□□□ -1.54
LINC00540-201ENST00000611481 RTF1Q92541 710 aaKnown RBP5.46□□□□□ -1.54
LINC00540-201ENST00000611481 FSD1Q9BTV5 496 aa5.46□□□□□ -1.54
LINC00540-201ENST00000611481 KIAA1683Q9H0B3 1180 aa5.46□□□□□ -1.54
LINC00540-201ENST00000611481 UBE2ZQ9H832 354 aaPredicted RBP5.46□□□□□ -1.54
LINC00540-201ENST00000611481 ALG13Q9NP73 1137 aaKnown RBP5.46□□□□□ -1.54
LINC00540-201ENST00000611481 RIC8BQ9NVN3 520 aa5.46□□□□□ -1.54
LINC00540-201ENST00000611481 MUTYHQ9UIF7 546 aa5.46□□□□□ -1.54
LINC00540-201ENST00000611481 SLC45A1Q9Y2W3 748 aa5.46□□□□□ -1.54
LINC00540-201ENST00000611481 GIT1Q9Y2X7 761 aa5.46□□□□□ -1.54
LINC00540-201ENST00000611481 REXO2Q9Y3B8 237 aaKnown RBP5.46□□□□□ -1.54
LINC00540-201ENST00000611481 MYO15AQ9UKN7 3530 aa5.45□□□□□ -1.54
LINC00540-201ENST00000611481 LOC107983988A0A1B0GUW6 1196 aaPredicted RBP5.45□□□□□ -1.54
LINC00540-201ENST00000611481 TMEM221A6NGB7 291 aa5.45□□□□□ -1.54
LINC00540-201ENST00000611481 EPOPA6NHQ4 379 aa5.45□□□□□ -1.54
LINC00540-201ENST00000611481 M0R296 226 aa5.45□□□□□ -1.54
LINC00540-201ENST00000611481 DIAPH1O60610 1272 aaKnown RBP5.45□□□□□ -1.54
LINC00540-201ENST00000611481 PABPC1P11940 636 aaKnown RBP5.45□□□□□ -1.54
LINC00540-201ENST00000611481 KCNA5P22460 613 aa5.45□□□□□ -1.54
LINC00540-201ENST00000611481 GTF2F1P35269 517 aaKnown RBP eCLIP5.45□□□□□ -1.54
LINC00540-201ENST00000611481 ADCY8P40145 1251 aa5.45□□□□□ -1.54
LINC00540-201ENST00000611481 VCPP55072 806 aaKnown RBP5.45□□□□□ -1.54
LINC00540-201ENST00000611481 IL13RA1P78552 427 aa5.45□□□□□ -1.54
LINC00540-201ENST00000611481 RBL2Q08999 1139 aa5.45□□□□□ -1.54
LINC00540-201ENST00000611481 PPIGQ13427 754 aaKnown RBP eCLIP5.45□□□□□ -1.54
LINC00540-201ENST00000611481 EIF4HQ15056 248 aaKnown RBP5.45□□□□□ -1.54
LINC00540-201ENST00000611481 LEXMQ3ZCV2 418 aa5.45□□□□□ -1.54
LINC00540-201ENST00000611481 CCDC152Q4G0S7 254 aa5.45□□□□□ -1.54
LINC00540-201ENST00000611481 EPHA10Q5JZY3 1008 aa5.45□□□□□ -1.54
LINC00540-201ENST00000611481 SDE2Q6IQ49 451 aa5.45□□□□□ -1.54
LINC00540-201ENST00000611481 NSMFQ6X4W1 530 aa5.45□□□□□ -1.54
LINC00540-201ENST00000611481 LARP4Q71RC2 724 aaKnown RBP eCLIP5.45□□□□□ -1.54
LINC00540-201ENST00000611481 LRP10Q7Z4F1 713 aa5.45□□□□□ -1.54
LINC00540-201ENST00000611481 BMP8AQ7Z5Y6 402 aa5.45□□□□□ -1.54
LINC00540-201ENST00000611481 SLC44A5Q8NCS7 719 aa5.45□□□□□ -1.54
LINC00540-201ENST00000611481 SOCS4Q8WXH5 440 aa5.45□□□□□ -1.54
LINC00540-201ENST00000611481 OSBP2Q969R2 916 aa5.45□□□□□ -1.54
LINC00540-201ENST00000611481 CLIP3Q96DZ5 547 aa5.45□□□□□ -1.54
LINC00540-201ENST00000611481 HOOK2Q96ED9 719 aa5.45□□□□□ -1.54
LINC00540-201ENST00000611481 AGAP2Q99490 1192 aa5.45□□□□□ -1.54
LINC00540-201ENST00000611481 OR10A2Q9H208 303 aa5.45□□□□□ -1.54
LINC00540-201ENST00000611481 METTL14Q9HCE5 456 aaKnown RBP5.45□□□□□ -1.54
LINC00540-201ENST00000611481 CD209Q9NNX6 404 aa5.45□□□□□ -1.54
LINC00540-201ENST00000611481 PARPBPQ9NWS1 579 aa5.45□□□□□ -1.54
LINC00540-201ENST00000611481 GALNT8Q9NY28 637 aa5.45□□□□□ -1.54
LINC00540-201ENST00000611481 CEP72Q9P209 647 aa5.45□□□□□ -1.54
LINC00540-201ENST00000611481 WDR3Q9UNX4 943 aaKnown RBP eCLIP5.45□□□□□ -1.54
LINC00540-201ENST00000611481 SRPK3Q9UPE1 567 aa5.45□□□□□ -1.54
LINC00540-201ENST00000611481 DMRT1Q9Y5R6 373 aa5.45□□□□□ -1.54
LINC00540-201ENST00000611481 ZHX2Q9Y6X8 837 aa5.45□□□□□ -1.54
LINC00540-201ENST00000611481 DNAH14Q0VDD8 3507 aa5.45□□□□□ -1.54
LINC00540-201ENST00000611481 TCRBV5S4A2TA0A5A2 114 aa5.44□□□□□ -1.54
LINC00540-201ENST00000611481 FAM90A27PA6NNH2 459 aa5.44□□□□□ -1.54
LINC00540-201ENST00000611481 RAMP2O60895 175 aa5.44□□□□□ -1.54
LINC00540-201ENST00000611481 SLC5A1P13866 664 aa5.44□□□□□ -1.54
LINC00540-201ENST00000611481 PDE6AP16499 860 aa5.44□□□□□ -1.54
LINC00540-201ENST00000611481 EIF2S2P20042 333 aaKnown RBP5.44□□□□□ -1.54
LINC00540-201ENST00000611481 PTGS1P23219 599 aa5.44□□□□□ -1.54
LINC00540-201ENST00000611481 GJA4P35212 333 aa5.44□□□□□ -1.54
LINC00540-201ENST00000611481 RGS2P41220 211 aa5.44□□□□□ -1.54
LINC00540-201ENST00000611481 GCLCP48506 637 aaPredicted RBP5.44□□□□□ -1.54
LINC00540-201ENST00000611481 GRM7Q14831 915 aa5.44□□□□□ -1.54
LINC00540-201ENST00000611481 TAF7Q15545 349 aaPredicted RBP5.44□□□□□ -1.54
LINC00540-201ENST00000611481 TREML2Q5T2D2 321 aa5.44□□□□□ -1.54
LINC00540-201ENST00000611481 MFSD14CQ5VZR4 134 aa5.44□□□□□ -1.54
LINC00540-201ENST00000611481 ANO1Q5XXA6 986 aa5.44□□□□□ -1.54
LINC00540-201ENST00000611481 TRIM68Q6AZZ1 485 aa5.44□□□□□ -1.54
LINC00540-201ENST00000611481 PSRC1Q6PGN9 363 aaPredicted RBP5.44□□□□□ -1.54
LINC00540-201ENST00000611481 ZNF627Q7L945 461 aa5.44□□□□□ -1.54
LINC00540-201ENST00000611481 KMT2EQ8IZD2 1858 aa5.44□□□□□ -1.54
LINC00540-201ENST00000611481 D2HGDHQ8N465 521 aa5.44□□□□□ -1.54
LINC00540-201ENST00000611481 ARNTL2Q8WYA1 636 aa5.44□□□□□ -1.54
LINC00540-201ENST00000611481 NKD2Q969F2 451 aaPredicted RBP5.44□□□□□ -1.54
LINC00540-201ENST00000611481 PHACTR3Q96KR7 559 aa5.44□□□□□ -1.54
LINC00540-201ENST00000611481 UPF3BQ9BZI7 483 aaKnown RBP5.44□□□□□ -1.54
LINC00540-201ENST00000611481 INCENPQ9NQS7 918 aa5.44□□□□□ -1.54
LINC00540-201ENST00000611481 ZNF292O60281 2723 aa5.44□□□□□ -1.54
LINC00540-201ENST00000611481 ZNF521Q96K83 1311 aa5.44□□□□□ -1.54
LINC00540-201ENST00000611481 EP300Q09472 2414 aaPredicted RBP5.44□□□□□ -1.54
LINC00540-201ENST00000611481 KRTAP23-1A1A580 65 aa5.43□□□□□ -1.54
LINC00540-201ENST00000611481 RAB11FIP3O75154 756 aa5.43□□□□□ -1.54
LINC00540-201ENST00000611481 PEX11BO96011 259 aa5.43□□□□□ -1.54
LINC00540-201ENST00000611481 TIMP1P01033 207 aa5.43□□□□□ -1.54
LINC00540-201ENST00000611481 CSF2RAP15509 400 aa5.43□□□□□ -1.54
LINC00540-201ENST00000611481 NBL1P41271 181 aa5.43□□□□□ -1.54
LINC00540-201ENST00000611481 MEOX1P50221 254 aa5.43□□□□□ -1.54
LINC00540-201ENST00000611481 EIF4A1P60842 406 aaKnown RBP5.43□□□□□ -1.54
LINC00540-201ENST00000611481 IGBP1P78318 339 aa5.43□□□□□ -1.54
LINC00540-201ENST00000611481 IFRD2Q12894 506 aaPredicted RBP5.43□□□□□ -1.54
LINC00540-201ENST00000611481 PCOLCEQ15113 449 aa5.43□□□□□ -1.54
LINC00540-201ENST00000611481 STILQ15468 1287 aa5.43□□□□□ -1.54
LINC00540-201ENST00000611481 GPR19Q15760 415 aa5.43□□□□□ -1.54
LINC00540-201ENST00000611481 MFSD5Q6N075 450 aa5.43□□□□□ -1.54
LINC00540-201ENST00000611481 ARHGAP36Q6ZRI8 547 aa5.43□□□□□ -1.54
LINC00540-201ENST00000611481 OTOP2Q7RTS6 562 aa5.43□□□□□ -1.54
LINC00540-201ENST00000611481 TMPRSS6Q8IU80 811 aa5.43□□□□□ -1.54
LINC00540-201ENST00000611481 ULK2Q8IYT8 1036 aa5.43□□□□□ -1.54
LINC00540-201ENST00000611481 GPR135Q8IZ08 494 aa5.43□□□□□ -1.54
LINC00540-201ENST00000611481 MTIF3Q9H2K0 278 aaKnown RBP5.43□□□□□ -1.54
Retrieved 100 of 20,778 RNA–protein pairs in 47.4 ms