RNA–Protein interactions for RNA: ENST00000599848.5

UPF1-207, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 1 (best) BASIC

Gene UPF1, Length 5,311 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-207ENST00000599848 PDIA6Q15084 440 aa21.47■■□□□ 1.03
UPF1-207ENST00000599848 LLGL1Q15334 1064 aa21.47■■□□□ 1.03
UPF1-207ENST00000599848 DCAF6Q58WW2 860 aa21.47■■□□□ 1.03
UPF1-207ENST00000599848 TMCO4Q5TGY1 634 aa21.47■■□□□ 1.03
UPF1-207ENST00000599848 FAM9CQ8IZT9 166 aa21.47■■□□□ 1.03
UPF1-207ENST00000599848 GPR75-ASB3A0A0A6YYF3 556 aa21.47■■□□□ 1.03
UPF1-207ENST00000599848 LIG3P49916 1009 aa21.47■■□□□ 1.03
UPF1-207ENST00000599848 FOXO4P98177 505 aa21.47■■□□□ 1.03
UPF1-207ENST00000599848 TRIM68Q6AZZ1 485 aa21.47■■□□□ 1.03
UPF1-207ENST00000599848 MARCH10Q8NA82 808 aaPredicted RBP21.47■■□□□ 1.03
UPF1-207ENST00000599848 SLC20A1Q8WUM9 679 aa21.47■■□□□ 1.03
UPF1-207ENST00000599848 AIFM3Q96NN9 605 aa21.47■■□□□ 1.03
UPF1-207ENST00000599848 NCOA3Q9Y6Q9 1424 aa21.46■■□□□ 1.03
UPF1-207ENST00000599848 CCDC22O60826 627 aa21.46■■□□□ 1.03
UPF1-207ENST00000599848 TMC7Q7Z402 723 aa21.46■■□□□ 1.03
UPF1-207ENST00000599848 ATG4CQ96DT6 458 aa21.46■■□□□ 1.03
UPF1-207ENST00000599848 CPVLQ9H3G5 476 aa21.46■■□□□ 1.03
UPF1-207ENST00000599848 FBXL21Q9UKT6 434 aa21.46■■□□□ 1.03
UPF1-207ENST00000599848 MCF2P10911 925 aa21.46■■□□□ 1.03
UPF1-207ENST00000599848 ZNF284Q2VY69 593 aa21.46■■□□□ 1.03
UPF1-207ENST00000599848 SLC45A4Q5BKX6 768 aa21.46■■□□□ 1.03
UPF1-207ENST00000599848 HES6Q96HZ4 224 aa21.46■■□□□ 1.03
UPF1-207ENST00000599848 CAPN11Q9UMQ6 739 aa21.46■■□□□ 1.03
UPF1-207ENST00000599848 FBXO21O94952 628 aa21.46■■□□□ 1.03
UPF1-207ENST00000599848 NCALDP61601 193 aa21.46■■□□□ 1.03
UPF1-207ENST00000599848 KCTD16Q68DU8 428 aa21.46■■□□□ 1.03
UPF1-207ENST00000599848 EPM2AIP1Q7L775 607 aaPredicted RBP21.46■■□□□ 1.03
UPF1-207ENST00000599848 SAMD7Q7Z3H4 446 aa21.46■■□□□ 1.03
UPF1-207ENST00000599848 WDR91A4D1P6 747 aa21.46■■□□□ 1.03
UPF1-207ENST00000599848 ATP9BO43861 1147 aa21.46■■□□□ 1.03
UPF1-207ENST00000599848 CKMP06732 381 aa21.46■■□□□ 1.03
UPF1-207ENST00000599848 GUCA1AP43080 201 aaPredicted RBP21.46■■□□□ 1.03
UPF1-207ENST00000599848 CREMQ03060 361 aa21.46■■□□□ 1.03
UPF1-207ENST00000599848 NNTQ13423 1086 aa21.46■■□□□ 1.03
UPF1-207ENST00000599848 EDRF1Q3B7T1 1238 aa21.46■■□□□ 1.03
UPF1-207ENST00000599848 DSG4Q86SJ6 1040 aa21.46■■□□□ 1.03
UPF1-207ENST00000599848 RBBP8NLQ8NC74 664 aaPredicted RBP21.46■■□□□ 1.03
UPF1-207ENST00000599848 STK33Q9BYT3 514 aa21.46■■□□□ 1.03
UPF1-207ENST00000599848 RSAD1Q9HA92 442 aa21.46■■□□□ 1.03
UPF1-207ENST00000599848 CCDC78A2IDD5 438 aa21.45■■□□□ 1.02
UPF1-207ENST00000599848 NLRP11P59045 1033 aaKnown RBP21.45■■□□□ 1.02
UPF1-207ENST00000599848 PDIA2Q13087 525 aaKnown RBP21.45■■□□□ 1.02
UPF1-207ENST00000599848 WDR41Q9HAD4 459 aa21.45■■□□□ 1.02
UPF1-207ENST00000599848 HMX1Q9NP08 348 aaPredicted RBP21.45■■□□□ 1.02
UPF1-207ENST00000599848 SYNDIG1LA6NDD5 238 aa21.45■■□□□ 1.02
UPF1-207ENST00000599848 PPARDQ03181 441 aa21.45■■□□□ 1.02
UPF1-207ENST00000599848 SNRNP35Q16560 246 aaKnown RBP21.45■■□□□ 1.02
UPF1-207ENST00000599848 C11orf57Q6ZUT1 292 aaPredicted RBP21.45■■□□□ 1.02
UPF1-207ENST00000599848 NUDCD3Q8IVD9 361 aa21.45■■□□□ 1.02
UPF1-207ENST00000599848 UBXN6Q9BZV1 441 aa21.45■■□□□ 1.02
UPF1-207ENST00000599848 GRK3P35626 688 aa21.45■■□□□ 1.02
UPF1-207ENST00000599848 TCF7P36402 384 aaPredicted RBP21.45■■□□□ 1.02
UPF1-207ENST00000599848 CAP2P40123 477 aa21.45■■□□□ 1.02
UPF1-207ENST00000599848 PTPRN2Q92932 1015 aa21.45■■□□□ 1.02
UPF1-207ENST00000599848 RIC8BQ9NVN3 520 aa21.45■■□□□ 1.02
UPF1-207ENST00000599848 NR1D1P20393 614 aa21.45■■□□□ 1.02
UPF1-207ENST00000599848 PRCPP42785 496 aa21.45■■□□□ 1.02
UPF1-207ENST00000599848 FBXO33Q7Z6M2 555 aa21.45■■□□□ 1.02
UPF1-207ENST00000599848 ATL2Q8NHH9 583 aa21.45■■□□□ 1.02
UPF1-207ENST00000599848 TMEM8AQ9HCN3 771 aa21.45■■□□□ 1.02
UPF1-207ENST00000599848 TMEM39AQ9NV64 488 aa21.45■■□□□ 1.02
UPF1-207ENST00000599848 TUBE1Q9UJT0 475 aa21.45■■□□□ 1.02
UPF1-207ENST00000599848 BACE1P56817 501 aa21.44■■□□□ 1.02
UPF1-207ENST00000599848 CYTH2Q99418 400 aa21.44■■□□□ 1.02
UPF1-207ENST00000599848 APEX2Q9UBZ4 518 aa21.44■■□□□ 1.02
UPF1-207ENST00000599848 ARHGEF40Q8TER5 1519 aa21.44■■□□□ 1.02
UPF1-207ENST00000599848 FRMD3A2A2Y4 597 aa21.44■■□□□ 1.02
UPF1-207ENST00000599848 SOWAHDA6NJG2 315 aa21.44■■□□□ 1.02
UPF1-207ENST00000599848 RGL2O15211 777 aa21.44■■□□□ 1.02
UPF1-207ENST00000599848 ZSCAN9O15535 394 aaPredicted RBP21.44■■□□□ 1.02
UPF1-207ENST00000599848 LHX1P48742 406 aa21.44■■□□□ 1.02
UPF1-207ENST00000599848 FLOT2Q14254 428 aa21.44■■□□□ 1.02
UPF1-207ENST00000599848 PLA2G4CQ9UP65 541 aa21.44■■□□□ 1.02
UPF1-207ENST00000599848 SNX24Q9Y343 169 aa21.44■■□□□ 1.02
UPF1-207ENST00000599848 STX7O15400 261 aaKnown RBP21.44■■□□□ 1.02
UPF1-207ENST00000599848 CXCR5P32302 372 aa21.44■■□□□ 1.02
UPF1-207ENST00000599848 SNX31Q8N9S9 440 aa21.44■■□□□ 1.02
UPF1-207ENST00000599848 ARHGEF26Q96DR7 871 aa21.44■■□□□ 1.02
UPF1-207ENST00000599848 CHST12Q9NRB3 414 aa21.44■■□□□ 1.02
UPF1-207ENST00000599848 PAK5Q9P286 719 aa21.44■■□□□ 1.02
UPF1-207ENST00000599848 NCKAP1Q9Y2A7 1128 aa21.44■■□□□ 1.02
UPF1-207ENST00000599848 PCDHB2Q9Y5E7 798 aa21.44■■□□□ 1.02
UPF1-207ENST00000599848 PITPNM2Q9BZ72 1349 aa21.44■■□□□ 1.02
UPF1-207ENST00000599848 POLRMTO00411 1230 aaKnown RBP21.44■■□□□ 1.02
UPF1-207ENST00000599848 PRR29P0C7W0 189 aa21.44■■□□□ 1.02
UPF1-207ENST00000599848 SKP1P63208 163 aa21.44■■□□□ 1.02
UPF1-207ENST00000599848 TIGD7Q6NT04 549 aaPredicted RBP21.44■■□□□ 1.02
UPF1-207ENST00000599848 USP50Q70EL3 339 aaPredicted RBP21.44■■□□□ 1.02
UPF1-207ENST00000599848 CSGALNACT1Q8TDX6 532 aa21.44■■□□□ 1.02
UPF1-207ENST00000599848 UXTQ9UBK9 157 aaPredicted RBP21.44■■□□□ 1.02
UPF1-207ENST00000599848 CLASP2O75122 1294 aaKnown RBP21.43■■□□□ 1.02
UPF1-207ENST00000599848 PPP4CP60510 307 aa21.43■■□□□ 1.02
UPF1-207ENST00000599848 TAF2Q6P1X5 1199 aa21.43■■□□□ 1.02
UPF1-207ENST00000599848 HPDLQ96IR7 371 aa21.43■■□□□ 1.02
UPF1-207ENST00000599848 XPO6Q96QU8 1125 aaKnown RBP21.43■■□□□ 1.02
UPF1-207ENST00000599848 CAMSAP3Q9P1Y5 1249 aaPredicted RBP21.43■■□□□ 1.02
UPF1-207ENST00000599848 DTNBO60941 627 aa21.43■■□□□ 1.02
UPF1-207ENST00000599848 NTSR2O95665 410 aa21.43■■□□□ 1.02
UPF1-207ENST00000599848 ASS1P00966 412 aaKnown RBP21.43■■□□□ 1.02
UPF1-207ENST00000599848 ALDH2P05091 517 aa21.43■■□□□ 1.02
Retrieved 100 of 20,778 RNA–protein pairs in 20.3 ms