RNA–Protein interactions for RNA: ENST00000598558.5

SHKBP1-217, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 3

Gene SHKBP1, Length 579 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-217ENST00000598558 CDCA3Q99618 268 aaPredicted RBP15.34■□□□□ 0.05
SHKBP1-217ENST00000598558 FNIP2Q9P278 1114 aa15.34■□□□□ 0.05
SHKBP1-217ENST00000598558 MTRRQ9UBK8 725 aa15.34■□□□□ 0.05
SHKBP1-217ENST00000598558 CDH22Q9UJ99 828 aa15.34■□□□□ 0.05
SHKBP1-217ENST00000598558 VNN1O95497 513 aa15.33■□□□□ 0.04
SHKBP1-217ENST00000598558 TRIM49P0CI25 452 aa15.33■□□□□ 0.04
SHKBP1-217ENST00000598558 TRIM49CP0CI26 452 aa15.33■□□□□ 0.04
SHKBP1-217ENST00000598558 TNNI1P19237 187 aa15.33■□□□□ 0.04
SHKBP1-217ENST00000598558 TAF6P49848 677 aa15.33■□□□□ 0.04
SHKBP1-217ENST00000598558 KCNQ1P51787 676 aa15.33■□□□□ 0.04
SHKBP1-217ENST00000598558 RBP5P82980 135 aa15.33■□□□□ 0.04
SHKBP1-217ENST00000598558 PPP3CAQ08209 521 aa15.33■□□□□ 0.04
SHKBP1-217ENST00000598558 BMS1Q14692 1282 aaKnown RBP15.33■□□□□ 0.04
SHKBP1-217ENST00000598558 TDRD10Q5VZ19 366 aaKnown RBP15.33■□□□□ 0.04
SHKBP1-217ENST00000598558 DSTYKQ6XUX3 929 aa15.33■□□□□ 0.04
SHKBP1-217ENST00000598558 FAM186BQ8IYM0 893 aa15.33■□□□□ 0.04
SHKBP1-217ENST00000598558 TRIML1Q8N9V2 468 aa15.33■□□□□ 0.04
SHKBP1-217ENST00000598558 TMC2Q8TDI7 906 aa15.33■□□□□ 0.04
SHKBP1-217ENST00000598558 PPP2R3CQ969Q6 453 aa15.33■□□□□ 0.04
SHKBP1-217ENST00000598558 ANKRD36BP1Q96IX9 119 aa15.33■□□□□ 0.04
SHKBP1-217ENST00000598558 FNBP1Q96RU3 617 aa15.33■□□□□ 0.04
SHKBP1-217ENST00000598558 RTP3Q9BQQ7 232 aa15.33■□□□□ 0.04
SHKBP1-217ENST00000598558 APOL5Q9BWW9 433 aa15.33■□□□□ 0.04
SHKBP1-217ENST00000598558 EMILIN2Q9BXX0 1053 aa15.33■□□□□ 0.04
SHKBP1-217ENST00000598558 GTPBP4Q9BZE4 634 aaKnown RBP15.33■□□□□ 0.04
SHKBP1-217ENST00000598558 S1PR5Q9H228 398 aa15.33■□□□□ 0.04
SHKBP1-217ENST00000598558 ITGA11Q9UKX5 1188 aa15.33■□□□□ 0.04
SHKBP1-217ENST00000598558 COG5Q9UP83 839 aa15.33■□□□□ 0.04
SHKBP1-217ENST00000598558 CTNND2Q9UQB3 1225 aa15.33■□□□□ 0.04
SHKBP1-217ENST00000598558 FRMD4BQ9Y2L6 1034 aa15.33■□□□□ 0.04
SHKBP1-217ENST00000598558 ANK1P16157 1881 aa15.33■□□□□ 0.04
SHKBP1-217ENST00000598558 CITO14578 2027 aa15.33■□□□□ 0.04
SHKBP1-217ENST00000598558 GRXCR2A6NFK2 248 aa15.32■□□□□ 0.04
SHKBP1-217ENST00000598558 KPNA7A9QM74 516 aa15.32■□□□□ 0.04
SHKBP1-217ENST00000598558 GOLGA6L22H0YM25 854 aa15.32■□□□□ 0.04
SHKBP1-217ENST00000598558 CYB561D2O14569 222 aa15.32■□□□□ 0.04
SHKBP1-217ENST00000598558 PSMA7O14818 248 aa15.32■□□□□ 0.04
SHKBP1-217ENST00000598558 SYN3O14994 580 aa15.32■□□□□ 0.04
SHKBP1-217ENST00000598558 MAPK13O15264 365 aa15.32■□□□□ 0.04
SHKBP1-217ENST00000598558 TGM5O43548 720 aa15.32■□□□□ 0.04
SHKBP1-217ENST00000598558 NCK2O43639 380 aa15.32■□□□□ 0.04
SHKBP1-217ENST00000598558 LRRN2O75325 713 aa15.32■□□□□ 0.04
SHKBP1-217ENST00000598558 TNNC2P02585 160 aa15.32■□□□□ 0.04
SHKBP1-217ENST00000598558 KRT19P08727 400 aa15.32■□□□□ 0.04
SHKBP1-217ENST00000598558 RPL13P26373 211 aaKnown RBP15.32■□□□□ 0.04
SHKBP1-217ENST00000598558 OR1D2P34982 312 aa15.32■□□□□ 0.04
SHKBP1-217ENST00000598558 PSMC2P35998 433 aaKnown RBP15.32■□□□□ 0.04
SHKBP1-217ENST00000598558 NDUFV1P49821 464 aa15.32■□□□□ 0.04
SHKBP1-217ENST00000598558 VAMP7P51809 220 aa15.32■□□□□ 0.04
SHKBP1-217ENST00000598558 FKBP3Q00688 224 aaKnown RBP15.32■□□□□ 0.04
SHKBP1-217ENST00000598558 WSCD1Q658N2 575 aa15.32■□□□□ 0.04
SHKBP1-217ENST00000598558 ANKRD54Q6NXT1 300 aa15.32■□□□□ 0.04
SHKBP1-217ENST00000598558 RBM43Q6ZSC3 357 aaKnown RBP15.32■□□□□ 0.04
SHKBP1-217ENST00000598558 PHF6Q8IWS0 365 aaKnown RBP eCLIP15.32■□□□□ 0.04
SHKBP1-217ENST00000598558 TMEM209Q96SK2 561 aa15.32■□□□□ 0.04
SHKBP1-217ENST00000598558 TMEM63CQ9P1W3 806 aa15.32■□□□□ 0.04
SHKBP1-217ENST00000598558 THEGQ9P2T0 379 aa15.32■□□□□ 0.04
SHKBP1-217ENST00000598558 FBXL5Q9UKA1 691 aa15.32■□□□□ 0.04
SHKBP1-217ENST00000598558 SSX2IPQ9Y2D8 614 aa15.32■□□□□ 0.04
SHKBP1-217ENST00000598558 GTF3C5Q9Y5Q8 519 aaPredicted RBP15.32■□□□□ 0.04
SHKBP1-217ENST00000598558 BACE2Q9Y5Z0 518 aa15.32■□□□□ 0.04
SHKBP1-217ENST00000598558 CDY1Q9Y6F8 540 aa15.32■□□□□ 0.04
SHKBP1-217ENST00000598558 XIRP2A4UGR9 3374 aa15.32■□□□□ 0.04
SHKBP1-217ENST00000598558 PDCD11Q14690 1871 aaKnown RBP15.31■□□□□ 0.04
SHKBP1-217ENST00000598558 CETN3O15182 167 aa15.31■□□□□ 0.04
SHKBP1-217ENST00000598558 OAZ2O95190 189 aa15.31■□□□□ 0.04
SHKBP1-217ENST00000598558 MYL6P60660 151 aa15.31■□□□□ 0.04
SHKBP1-217ENST00000598558 LRRC63Q05C16 580 aa15.31■□□□□ 0.04
SHKBP1-217ENST00000598558 BFSP1Q12934 665 aa15.31■□□□□ 0.04
SHKBP1-217ENST00000598558 RAB33AQ14088 237 aa15.31■□□□□ 0.04
SHKBP1-217ENST00000598558 DPCR1Q3MIW9 517 aa15.31■□□□□ 0.04
SHKBP1-217ENST00000598558 LEXMQ3ZCV2 418 aa15.31■□□□□ 0.04
SHKBP1-217ENST00000598558 C15orf39Q6ZRI6 1047 aa15.31■□□□□ 0.04
SHKBP1-217ENST00000598558 ANKS3Q6ZW76 656 aa15.31■□□□□ 0.04
SHKBP1-217ENST00000598558 SV2AQ7L0J3 742 aa15.31■□□□□ 0.04
SHKBP1-217ENST00000598558 LIMS2Q7Z4I7 341 aa15.31■□□□□ 0.04
SHKBP1-217ENST00000598558 OSTM1Q86WC4 334 aa15.31■□□□□ 0.04
SHKBP1-217ENST00000598558 LRRC52Q8N7C0 313 aa15.31■□□□□ 0.04
SHKBP1-217ENST00000598558 TSG101Q99816 390 aa15.31■□□□□ 0.04
SHKBP1-217ENST00000598558 XYLT2Q9H1B5 865 aa15.31■□□□□ 0.04
SHKBP1-217ENST00000598558 APOBEC3CQ9NRW3 190 aaKnown RBP eCLIP15.31■□□□□ 0.04
SHKBP1-217ENST00000598558 L1RE1Q9UN81 338 aa15.31■□□□□ 0.04
SHKBP1-217ENST00000598558 HCRTO43612 131 aa15.3■□□□□ 0.04
SHKBP1-217ENST00000598558 VNN2O95498 520 aa15.3■□□□□ 0.04
SHKBP1-217ENST00000598558 CYP11A1P05108 521 aa15.3■□□□□ 0.04
SHKBP1-217ENST00000598558 ADH1AP07327 375 aa15.3■□□□□ 0.04
SHKBP1-217ENST00000598558 OR4Q2P0C623 313 aa15.3■□□□□ 0.04
SHKBP1-217ENST00000598558 BMP1P13497 986 aa15.3■□□□□ 0.04
SHKBP1-217ENST00000598558 TYMPP19971 482 aa15.3■□□□□ 0.04
SHKBP1-217ENST00000598558 GCLMP48507 274 aa15.3■□□□□ 0.04
SHKBP1-217ENST00000598558 CDR1P51861 262 aa15.3■□□□□ 0.04
SHKBP1-217ENST00000598558 NLRP12P59046 1061 aa15.3■□□□□ 0.04
SHKBP1-217ENST00000598558 PAK1Q13153 545 aa15.3■□□□□ 0.04
SHKBP1-217ENST00000598558 STIM1Q13586 685 aa15.3■□□□□ 0.04
SHKBP1-217ENST00000598558 ZACNQ401N2 412 aa15.3■□□□□ 0.04
SHKBP1-217ENST00000598558 CTXN3Q4LDR2 81 aa15.3■□□□□ 0.04
SHKBP1-217ENST00000598558 SLC8B1Q6J4K2 584 aa15.3■□□□□ 0.04
SHKBP1-217ENST00000598558 APPL2Q8NEU8 664 aa15.3■□□□□ 0.04
SHKBP1-217ENST00000598558 OR10T2Q8NGX3 314 aa15.3■□□□□ 0.04
SHKBP1-217ENST00000598558 HPDLQ96IR7 371 aa15.3■□□□□ 0.04
Retrieved 100 of 20,778 RNA–protein pairs in 18.8 ms