RNA–Protein interactions for RNA: ENST00000594243.1

UPF1-202, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 3

Gene UPF1, Length 683 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-202ENST00000594243 FRMD4BQ9Y2L6 1034 aa16.23■□□□□ 0.19
UPF1-202ENST00000594243 GOLGA6L22H0YM25 854 aa16.22■□□□□ 0.19
UPF1-202ENST00000594243 PPEF2O14830 753 aa16.22■□□□□ 0.19
UPF1-202ENST00000594243 TGM5O43548 720 aa16.22■□□□□ 0.19
UPF1-202ENST00000594243 ITGB3P05106 788 aa16.22■□□□□ 0.19
UPF1-202ENST00000594243 DLATP10515 647 aaKnown RBP16.22■□□□□ 0.19
UPF1-202ENST00000594243 ODC1P11926 461 aa16.22■□□□□ 0.19
UPF1-202ENST00000594243 OR1D2P34982 312 aa16.22■□□□□ 0.19
UPF1-202ENST00000594243 PRCPP42785 496 aa16.22■□□□□ 0.19
UPF1-202ENST00000594243 RBP5P82980 135 aa16.22■□□□□ 0.19
UPF1-202ENST00000594243 YWHAHQ04917 246 aaPredicted RBP16.22■□□□□ 0.19
UPF1-202ENST00000594243 STIM1Q13586 685 aa16.22■□□□□ 0.19
UPF1-202ENST00000594243 RAB33AQ14088 237 aa16.22■□□□□ 0.19
UPF1-202ENST00000594243 SV2CQ496J9 727 aa16.22■□□□□ 0.19
UPF1-202ENST00000594243 LILRA6Q6PI73 481 aa16.22■□□□□ 0.19
UPF1-202ENST00000594243 SYCE2Q6PIF2 218 aa16.22■□□□□ 0.19
UPF1-202ENST00000594243 USP37Q86T82 979 aa16.22■□□□□ 0.19
UPF1-202ENST00000594243 SMYD4Q8IYR2 804 aaPredicted RBP16.22■□□□□ 0.19
UPF1-202ENST00000594243 C1orf127Q8N9H9 656 aa16.22■□□□□ 0.19
UPF1-202ENST00000594243 CCDC127Q96BQ5 260 aa16.22■□□□□ 0.19
UPF1-202ENST00000594243 SENP8Q96LD8 212 aa16.22■□□□□ 0.19
UPF1-202ENST00000594243 S1PR5Q9H228 398 aa16.22■□□□□ 0.19
UPF1-202ENST00000594243 ADAM7Q9H2U9 754 aa16.22■□□□□ 0.19
UPF1-202ENST00000594243 SFXN1Q9H9B4 322 aa16.22■□□□□ 0.19
UPF1-202ENST00000594243 DSEQ9UL01 958 aa16.22■□□□□ 0.19
UPF1-202ENST00000594243 AGAP1Q9UPQ3 857 aa16.22■□□□□ 0.19
UPF1-202ENST00000594243 CDY1Q9Y6F8 540 aa16.22■□□□□ 0.19
UPF1-202ENST00000594243 KPNA7A9QM74 516 aa16.21■□□□□ 0.19
UPF1-202ENST00000594243 MAPK13O15264 365 aa16.21■□□□□ 0.19
UPF1-202ENST00000594243 SPTLC1O15269 473 aa16.21■□□□□ 0.19
UPF1-202ENST00000594243 KRT19P08727 400 aa16.21■□□□□ 0.19
UPF1-202ENST00000594243 TYMPP19971 482 aa16.21■□□□□ 0.19
UPF1-202ENST00000594243 NR2F2P24468 414 aa16.21■□□□□ 0.19
UPF1-202ENST00000594243 POLR2BP30876 1174 aaKnown RBP16.21■□□□□ 0.19
UPF1-202ENST00000594243 AP3M2P53677 418 aa16.21■□□□□ 0.19
UPF1-202ENST00000594243 ADAM9Q13443 819 aa16.21■□□□□ 0.19
UPF1-202ENST00000594243 SMAD2Q15796 467 aaKnown RBP16.21■□□□□ 0.19
UPF1-202ENST00000594243 EDRF1Q3B7T1 1238 aa16.21■□□□□ 0.19
UPF1-202ENST00000594243 CTXN3Q4LDR2 81 aa16.21■□□□□ 0.19
UPF1-202ENST00000594243 CEP135Q66GS9 1140 aa16.21■□□□□ 0.19
UPF1-202ENST00000594243 ZNF280DQ6N043 979 aa16.21■□□□□ 0.19
UPF1-202ENST00000594243 METTL23Q86XA0 190 aa16.21■□□□□ 0.19
UPF1-202ENST00000594243 LRRC52Q8N7C0 313 aa16.21■□□□□ 0.19
UPF1-202ENST00000594243 CGRRF1Q99675 332 aa16.21■□□□□ 0.19
UPF1-202ENST00000594243 TSG101Q99816 390 aa16.21■□□□□ 0.19
UPF1-202ENST00000594243 MTMR12Q9C0I1 747 aa16.21■□□□□ 0.19
UPF1-202ENST00000594243 MAN1C1Q9NR34 630 aa16.21■□□□□ 0.19
UPF1-202ENST00000594243 MAN1B1Q9UKM7 699 aa16.21■□□□□ 0.19
UPF1-202ENST00000594243 MUC3AQ02505 3323 aa16.21■□□□□ 0.18
UPF1-202ENST00000594243 ANK1P16157 1881 aa16.2■□□□□ 0.18
UPF1-202ENST00000594243 CYB561D2O14569 222 aa16.2■□□□□ 0.18
UPF1-202ENST00000594243 TBC1D4O60343 1298 aa16.2■□□□□ 0.18
UPF1-202ENST00000594243 OAZ2O95190 189 aa16.2■□□□□ 0.18
UPF1-202ENST00000594243 SPATA31D3P0C874 917 aa16.2■□□□□ 0.18
UPF1-202ENST00000594243 IL9P15248 144 aa16.2■□□□□ 0.18
UPF1-202ENST00000594243 MYO1EQ12965 1108 aa16.2■□□□□ 0.18
UPF1-202ENST00000594243 CAMK4Q16566 473 aa16.2■□□□□ 0.18
UPF1-202ENST00000594243 ATAT1Q5SQI0 421 aa16.2■□□□□ 0.18
UPF1-202ENST00000594243 LMBRD2Q68DH5 695 aaPredicted RBP16.2■□□□□ 0.18
UPF1-202ENST00000594243 ISM2Q6H9L7 571 aa16.2■□□□□ 0.18
UPF1-202ENST00000594243 CENPPQ6IPU0 288 aa16.2■□□□□ 0.18
UPF1-202ENST00000594243 SLC8B1Q6J4K2 584 aa16.2■□□□□ 0.18
UPF1-202ENST00000594243 CYP26C1Q6V0L0 522 aa16.2■□□□□ 0.18
UPF1-202ENST00000594243 SPATA31D4Q6ZUB0 917 aa16.2■□□□□ 0.18
UPF1-202ENST00000594243 TRAPPC11Q7Z392 1133 aa16.2■□□□□ 0.18
UPF1-202ENST00000594243 ADSSL1Q8N142 457 aa16.2■□□□□ 0.18
UPF1-202ENST00000594243 KREMEN2Q8NCW0 462 aa16.2■□□□□ 0.18
UPF1-202ENST00000594243 OR5B17Q8NGF7 314 aa16.2■□□□□ 0.18
UPF1-202ENST00000594243 ADAMTS19Q8TE59 1207 aa16.2■□□□□ 0.18
UPF1-202ENST00000594243 PARD3BQ8TEW8 1205 aa16.2■□□□□ 0.18
UPF1-202ENST00000594243 DHTKD1Q96HY7 919 aaPredicted RBP16.2■□□□□ 0.18
UPF1-202ENST00000594243 RIPOR3Q96MK2 946 aa16.2■□□□□ 0.18
UPF1-202ENST00000594243 POP1Q99575 1024 aaKnown RBP16.2■□□□□ 0.18
UPF1-202ENST00000594243 APOL5Q9BWW9 433 aa16.2■□□□□ 0.18
UPF1-202ENST00000594243 LMBRD1Q9NUN5 540 aa16.2■□□□□ 0.18
UPF1-202ENST00000594243 PRKAG3Q9UGI9 489 aa16.2■□□□□ 0.18
UPF1-202ENST00000594243 USP15Q9Y4E8 981 aaPredicted RBP16.2■□□□□ 0.18
UPF1-202ENST00000594243 TIMM13Q9Y5L4 95 aaPredicted RBP16.2■□□□□ 0.18
UPF1-202ENST00000594243 ADAM12O43184 909 aa16.19■□□□□ 0.18
UPF1-202ENST00000594243 CYP11A1P05108 521 aa16.19■□□□□ 0.18
UPF1-202ENST00000594243 PSMC2P35998 433 aaKnown RBP16.19■□□□□ 0.18
UPF1-202ENST00000594243 CASP4P49662 377 aa16.19■□□□□ 0.18
UPF1-202ENST00000594243 CLDN10P78369 228 aa16.19■□□□□ 0.18
UPF1-202ENST00000594243 MORC3Q14149 939 aa16.19■□□□□ 0.18
UPF1-202ENST00000594243 UVSSAQ2YD98 709 aa16.19■□□□□ 0.18
UPF1-202ENST00000594243 ZCWPW2Q504Y3 356 aa16.19■□□□□ 0.18
UPF1-202ENST00000594243 RARS2Q5T160 578 aaKnown RBP16.19■□□□□ 0.18
UPF1-202ENST00000594243 OVOS1Q6IE37 1185 aa16.19■□□□□ 0.18
UPF1-202ENST00000594243 RSPO2Q6UXX9 243 aaPredicted RBP16.19■□□□□ 0.18
UPF1-202ENST00000594243 C15orf39Q6ZRI6 1047 aa16.19■□□□□ 0.18
UPF1-202ENST00000594243 RTL10Q7L3V2 364 aa16.19■□□□□ 0.18
UPF1-202ENST00000594243 THEM5Q8N1Q8 247 aa16.19■□□□□ 0.18
UPF1-202ENST00000594243 C12orf76Q8N812 135 aaPredicted RBP16.19■□□□□ 0.18
UPF1-202ENST00000594243 TRIML1Q8N9V2 468 aa16.19■□□□□ 0.18
UPF1-202ENST00000594243 ZNF461Q8TAF7 563 aa16.19■□□□□ 0.18
UPF1-202ENST00000594243 CXorf38Q8TB03 319 aa16.19■□□□□ 0.18
UPF1-202ENST00000594243 TMC2Q8TDI7 906 aa16.19■□□□□ 0.18
UPF1-202ENST00000594243 BORCS6Q96GS4 357 aa16.19■□□□□ 0.18
UPF1-202ENST00000594243 NECTIN4Q96NY8 510 aa16.19■□□□□ 0.18
UPF1-202ENST00000594243 ZDHHC7Q9NXF8 308 aa16.19■□□□□ 0.18
Retrieved 100 of 20,778 RNA–protein pairs in 18.1 ms