RNA–Protein interactions for RNA: ENST00000590559.2

CLIP3-204, Transcript of CAP-Gly domain containing linker protein 3, humanhuman

TSL 4

Gene CLIP3, Length 549 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP3-204ENST00000590559 ARPP19P56211 112 aa12.8□□□□□ -0.36
CLIP3-204ENST00000590559 RAD51AP2Q09MP3 1159 aa12.8□□□□□ -0.36
CLIP3-204ENST00000590559 STRN3Q13033 797 aa12.8□□□□□ -0.36
CLIP3-204ENST00000590559 ARL6IP4Q66PJ3 421 aaKnown RBP12.8□□□□□ -0.36
CLIP3-204ENST00000590559 ZNF852Q6ZMS4 543 aa12.8□□□□□ -0.36
CLIP3-204ENST00000590559 PDZD4Q76G19 769 aaPredicted RBP12.8□□□□□ -0.36
CLIP3-204ENST00000590559 TMC8Q8IU68 726 aa12.8□□□□□ -0.36
CLIP3-204ENST00000590559 LEMD2Q8NC56 503 aa12.8□□□□□ -0.36
CLIP3-204ENST00000590559 SMARCD2Q92925 531 aa12.8□□□□□ -0.36
CLIP3-204ENST00000590559 DNAJC25Q9H1X3 360 aa12.8□□□□□ -0.36
CLIP3-204ENST00000590559 EPC1Q9H2F5 836 aa12.8□□□□□ -0.36
CLIP3-204ENST00000590559 CRISPLD1Q9H336 500 aa12.8□□□□□ -0.36
CLIP3-204ENST00000590559 ZFP14Q9HCL3 533 aa12.8□□□□□ -0.36
CLIP3-204ENST00000590559 ZSCAN32Q9NX65 697 aa12.8□□□□□ -0.36
CLIP3-204ENST00000590559 ANKFY1Q9P2R3 1169 aa12.8□□□□□ -0.36
CLIP3-204ENST00000590559 OBSL1O75147 1896 aa12.79□□□□□ -0.36
CLIP3-204ENST00000590559 NPHP3-ACAD11A0A0J9YXS1 232 aa12.79□□□□□ -0.36
CLIP3-204ENST00000590559 NCAM2O15394 837 aa12.79□□□□□ -0.36
CLIP3-204ENST00000590559 PLA2G4BP0C869 781 aa12.79□□□□□ -0.36
CLIP3-204ENST00000590559 HARSP12081 509 aaKnown RBP12.79□□□□□ -0.36
CLIP3-204ENST00000590559 PSMC3P17980 439 aa12.79□□□□□ -0.36
CLIP3-204ENST00000590559 TGM1P22735 817 aa12.79□□□□□ -0.36
CLIP3-204ENST00000590559 MCM4P33991 863 aa12.79□□□□□ -0.36
CLIP3-204ENST00000590559 TNFSF9P41273 254 aa12.79□□□□□ -0.36
CLIP3-204ENST00000590559 ZNF131P52739 623 aa12.79□□□□□ -0.36
CLIP3-204ENST00000590559 MLLT6P55198 1093 aaPredicted RBP12.79□□□□□ -0.36
CLIP3-204ENST00000590559 CSTF1Q05048 431 aaKnown RBP12.79□□□□□ -0.36
CLIP3-204ENST00000590559 TWF1Q12792 350 aa12.79□□□□□ -0.36
CLIP3-204ENST00000590559 MTAPQ13126 283 aa12.79□□□□□ -0.36
CLIP3-204ENST00000590559 GRM2Q14416 872 aa12.79□□□□□ -0.36
CLIP3-204ENST00000590559 ENOX2Q16206 610 aaKnown RBP12.79□□□□□ -0.36
CLIP3-204ENST00000590559 HAUS6Q7Z4H7 955 aa12.79□□□□□ -0.36
CLIP3-204ENST00000590559 MFSD6LQ8IWD5 586 aa12.79□□□□□ -0.36
CLIP3-204ENST00000590559 IRF7Q92985 503 aa12.79□□□□□ -0.36
CLIP3-204ENST00000590559 RSPRY1Q96DX4 576 aa12.79□□□□□ -0.36
CLIP3-204ENST00000590559 ZNF512Q96ME7 567 aaPredicted RBP12.79□□□□□ -0.36
CLIP3-204ENST00000590559 FIZ1Q96SL8 496 aa12.79□□□□□ -0.36
CLIP3-204ENST00000590559 TRMT61BQ9BVS5 477 aaKnown RBP12.79□□□□□ -0.36
CLIP3-204ENST00000590559 OXCT2Q9BYC2 517 aaPredicted RBP12.79□□□□□ -0.36
CLIP3-204ENST00000590559 CHRDQ9H2X0 955 aa12.79□□□□□ -0.36
CLIP3-204ENST00000590559 MRPS17Q9Y2R5 130 aaKnown RBP12.79□□□□□ -0.36
CLIP3-204ENST00000590559 GTF3C5Q9Y5Q8 519 aaPredicted RBP12.79□□□□□ -0.36
CLIP3-204ENST00000590559 TCHHQ07283 1943 aa12.79□□□□□ -0.36
CLIP3-204ENST00000590559 VWA3AA6NCI4 1184 aa12.78□□□□□ -0.36
CLIP3-204ENST00000590559 LACTBL1A8MY62 500 aa12.78□□□□□ -0.36
CLIP3-204ENST00000590559 MAN2B1O00754 1011 aa12.78□□□□□ -0.36
CLIP3-204ENST00000590559 SLC26A4O43511 780 aa12.78□□□□□ -0.36
CLIP3-204ENST00000590559 VIPR2P41587 438 aa12.78□□□□□ -0.36
CLIP3-204ENST00000590559 YWHAHQ04917 246 aaPredicted RBP12.78□□□□□ -0.36
CLIP3-204ENST00000590559 SPAG1Q07617 926 aa12.78□□□□□ -0.36
CLIP3-204ENST00000590559 GPR17Q13304 367 aa12.78□□□□□ -0.36
CLIP3-204ENST00000590559 PUM1Q14671 1186 aaKnown RBP eCLIP12.78□□□□□ -0.36
CLIP3-204ENST00000590559 CYP4A22Q5TCH4 519 aa12.78□□□□□ -0.36
CLIP3-204ENST00000590559 IQCEQ6IPM2 695 aa12.78□□□□□ -0.36
CLIP3-204ENST00000590559 SLC39A4Q6P5W5 647 aa12.78□□□□□ -0.36
CLIP3-204ENST00000590559 TSSK4Q6SA08 328 aa12.78□□□□□ -0.36
CLIP3-204ENST00000590559 ELMOD1Q8N336 334 aa12.78□□□□□ -0.36
CLIP3-204ENST00000590559 SHKBP1Q8TBC3 707 aa12.78□□□□□ -0.36
CLIP3-204ENST00000590559 DEPDC1BQ8WUY9 529 aa12.78□□□□□ -0.36
CLIP3-204ENST00000590559 TSPAN18Q96SJ8 248 aa12.78□□□□□ -0.36
CLIP3-204ENST00000590559 IER2Q9BTL4 223 aa12.78□□□□□ -0.36
CLIP3-204ENST00000590559 MKNK1Q9BUB5 465 aa12.78□□□□□ -0.36
CLIP3-204ENST00000590559 FAM126AQ9BYI3 521 aaPredicted RBP12.78□□□□□ -0.36
CLIP3-204ENST00000590559 BRD9Q9H8M2 597 aa12.78□□□□□ -0.36
CLIP3-204ENST00000590559 BLOC1S4Q9NUP1 217 aa12.78□□□□□ -0.36
CLIP3-204ENST00000590559 LARSQ9P2J5 1176 aaKnown RBP12.78□□□□□ -0.36
CLIP3-204ENST00000590559 ODF2LQ9ULJ1 636 aa12.78□□□□□ -0.36
CLIP3-204ENST00000590559 UBQLN1Q9UMX0 589 aaKnown RBP12.78□□□□□ -0.36
CLIP3-204ENST00000590559 YIPF1Q9Y548 306 aa12.78□□□□□ -0.36
CLIP3-204ENST00000590559 TIMM13Q9Y5L4 95 aaPredicted RBP12.78□□□□□ -0.36
CLIP3-204ENST00000590559 NCOR2Q9Y618 2525 aa12.78□□□□□ -0.36
CLIP3-204ENST00000590559 KMT2BQ9UMN6 2715 aaPredicted RBP12.77□□□□□ -0.36
CLIP3-204ENST00000590559 MED19A0JLT2 244 aaPredicted RBP12.77□□□□□ -0.37
CLIP3-204ENST00000590559 H0YCG3 227 aa12.77□□□□□ -0.37
CLIP3-204ENST00000590559 PPEF2O14830 753 aa12.77□□□□□ -0.37
CLIP3-204ENST00000590559 OR4Q2P0C623 313 aa12.77□□□□□ -0.37
CLIP3-204ENST00000590559 CPB1P15086 417 aa12.77□□□□□ -0.37
CLIP3-204ENST00000590559 GJA1P17302 382 aa12.77□□□□□ -0.37
CLIP3-204ENST00000590559 TYMPP19971 482 aa12.77□□□□□ -0.37
CLIP3-204ENST00000590559 SCP2P22307 547 aa12.77□□□□□ -0.37
CLIP3-204ENST00000590559 MARCKSP29966 332 aaPredicted RBP12.77□□□□□ -0.37
CLIP3-204ENST00000590559 GDI1P31150 447 aa12.77□□□□□ -0.37
CLIP3-204ENST00000590559 LILRA4P59901 499 aa12.77□□□□□ -0.37
CLIP3-204ENST00000590559 CACNB1Q02641 598 aaPredicted RBP12.77□□□□□ -0.37
CLIP3-204ENST00000590559 FCHO2Q0JRZ9 810 aa12.77□□□□□ -0.37
CLIP3-204ENST00000590559 MYBPC2Q14324 1141 aa12.77□□□□□ -0.37
CLIP3-204ENST00000590559 GAS6Q14393 721 aa12.77□□□□□ -0.37
CLIP3-204ENST00000590559 TEAD2Q15562 447 aa12.77□□□□□ -0.37
CLIP3-204ENST00000590559 WDR44Q5JSH3 913 aa12.77□□□□□ -0.37
CLIP3-204ENST00000590559 SPATA1Q5VX52 437 aa12.77□□□□□ -0.37
CLIP3-204ENST00000590559 CENPPQ6IPU0 288 aa12.77□□□□□ -0.37
CLIP3-204ENST00000590559 ZSCAN18Q8TBC5 510 aaPredicted RBP12.77□□□□□ -0.37
CLIP3-204ENST00000590559 KIF12Q96FN5 646 aa12.77□□□□□ -0.37
CLIP3-204ENST00000590559 AK8Q96MA6 479 aa12.77□□□□□ -0.37
CLIP3-204ENST00000590559 PLIN2Q99541 437 aa12.77□□□□□ -0.37
CLIP3-204ENST00000590559 REEP2Q9BRK0 252 aa12.77□□□□□ -0.37
CLIP3-204ENST00000590559 GPR88Q9GZN0 384 aa12.77□□□□□ -0.37
CLIP3-204ENST00000590559 ASAH2Q9NR71 780 aa12.77□□□□□ -0.37
CLIP3-204ENST00000590559 HSFX1Q9UBD0 423 aa12.77□□□□□ -0.37
CLIP3-204ENST00000590559 TBX20Q9UMR3 447 aa12.77□□□□□ -0.37
Retrieved 100 of 20,778 RNA–protein pairs in 41.4 ms