RNA–Protein interactions for RNA: ENST00000589604.5

VPS4B-204, Transcript of vacuolar protein sorting 4 homolog B, humanhuman

TSL 1 (best)

Gene VPS4B, Length 1,672 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4B-204ENST00000589604 LACTBL1A8MY62 500 aa11.25□□□□□ -0.61
VPS4B-204ENST00000589604 OFD1O75665 1012 aa11.25□□□□□ -0.61
VPS4B-204ENST00000589604 RECQL4O94761 1208 aa11.25□□□□□ -0.61
VPS4B-204ENST00000589604 EOMESO95936 686 aa11.25□□□□□ -0.61
VPS4B-204ENST00000589604 HLA-DRAP01903 254 aa11.25□□□□□ -0.61
VPS4B-204ENST00000589604 PNMA6AP0CW24 399 aaPredicted RBP11.25□□□□□ -0.61
VPS4B-204ENST00000589604 GRM5P41594 1212 aa11.25□□□□□ -0.61
VPS4B-204ENST00000589604 RAB27AP51159 221 aa11.25□□□□□ -0.61
VPS4B-204ENST00000589604 LRIT3Q3SXY7 679 aa11.25□□□□□ -0.61
VPS4B-204ENST00000589604 HABP4Q5JVS0 413 aaKnown RBP11.25□□□□□ -0.61
VPS4B-204ENST00000589604 SFMBT2Q5VUG0 894 aa11.25□□□□□ -0.61
VPS4B-204ENST00000589604 CXorf38Q8TB03 319 aa11.25□□□□□ -0.61
VPS4B-204ENST00000589604 SP7Q8TDD2 431 aaPredicted RBP11.25□□□□□ -0.61
VPS4B-204ENST00000589604 KAT5Q92993 513 aa11.25□□□□□ -0.61
VPS4B-204ENST00000589604 TATDN2Q93075 761 aa11.25□□□□□ -0.61
VPS4B-204ENST00000589604 LRCH3Q96II8 777 aa11.25□□□□□ -0.61
VPS4B-204ENST00000589604 STK33Q9BYT3 514 aa11.25□□□□□ -0.61
VPS4B-204ENST00000589604 NUCKS1Q9H1E3 243 aaKnown RBP11.25□□□□□ -0.61
VPS4B-204ENST00000589604 RPF1Q9H9Y2 349 aaKnown RBP11.25□□□□□ -0.61
VPS4B-204ENST00000589604 A0A0U1RQJ8 604 aa11.24□□□□□ -0.61
VPS4B-204ENST00000589604 A0A1W2PPC1 479 aa11.24□□□□□ -0.61
VPS4B-204ENST00000589604 ARL5CA6NH57 179 aa11.24□□□□□ -0.61
VPS4B-204ENST00000589604 PTGESO14684 152 aa11.24□□□□□ -0.61
VPS4B-204ENST00000589604 ZNF263O14978 683 aa11.24□□□□□ -0.61
VPS4B-204ENST00000589604 NRDCO43847 1150 aa11.24□□□□□ -0.61
VPS4B-204ENST00000589604 TLL1O43897 1013 aa11.24□□□□□ -0.61
VPS4B-204ENST00000589604 IL18RAPO95256 599 aa11.24□□□□□ -0.61
VPS4B-204ENST00000589604 CST3P01034 146 aaPredicted RBP11.24□□□□□ -0.61
VPS4B-204ENST00000589604 CA3P07451 260 aa11.24□□□□□ -0.61
VPS4B-204ENST00000589604 ITGA4P13612 1032 aa11.24□□□□□ -0.61
VPS4B-204ENST00000589604 MLH1P40692 756 aa11.24□□□□□ -0.61
VPS4B-204ENST00000589604 CETN1Q12798 172 aa11.24□□□□□ -0.61
VPS4B-204ENST00000589604 DRAP1Q14919 205 aaPredicted RBP11.24□□□□□ -0.61
VPS4B-204ENST00000589604 SURF1Q15526 300 aa11.24□□□□□ -0.61
VPS4B-204ENST00000589604 KYAT1Q16773 422 aa11.24□□□□□ -0.61
VPS4B-204ENST00000589604 TSR1Q2NL82 804 aaKnown RBP11.24□□□□□ -0.61
VPS4B-204ENST00000589604 DCAF4L1Q3SXM0 396 aa11.24□□□□□ -0.61
VPS4B-204ENST00000589604 ALKAL1Q6UXT8 129 aa11.24□□□□□ -0.61
VPS4B-204ENST00000589604 ATRIPQ8WXE1 791 aa11.24□□□□□ -0.61
VPS4B-204ENST00000589604 GAD1Q99259 594 aa11.24□□□□□ -0.61
VPS4B-204ENST00000589604 RAD9AQ99638 391 aa11.24□□□□□ -0.61
VPS4B-204ENST00000589604 ADPGKQ9BRR6 497 aa11.24□□□□□ -0.61
VPS4B-204ENST00000589604 DESI2Q9BSY9 194 aa11.24□□□□□ -0.61
VPS4B-204ENST00000589604 PI4K2AQ9BTU6 479 aa11.24□□□□□ -0.61
VPS4B-204ENST00000589604 TRIM6Q9C030 488 aaPredicted RBP11.24□□□□□ -0.61
VPS4B-204ENST00000589604 NKX2-4Q9H2Z4 354 aa11.24□□□□□ -0.61
VPS4B-204ENST00000589604 NHEJ1Q9H9Q4 299 aaPredicted RBP11.24□□□□□ -0.61
VPS4B-204ENST00000589604 APOBEC3GQ9HC16 384 aaKnown RBP11.24□□□□□ -0.61
VPS4B-204ENST00000589604 UBE2TQ9NPD8 197 aaPredicted RBP11.24□□□□□ -0.61
VPS4B-204ENST00000589604 UTP3Q9NQZ2 479 aaKnown RBP eCLIP11.24□□□□□ -0.61
VPS4B-204ENST00000589604 LRFN2Q9ULH4 789 aa11.24□□□□□ -0.61
VPS4B-204ENST00000589604 PPP2R2CQ9Y2T4 447 aa11.24□□□□□ -0.61
VPS4B-204ENST00000589604 EPN1Q9Y6I3 576 aaPredicted RBP11.24□□□□□ -0.61
VPS4B-204ENST00000589604 EYSQ5T1H1 3165 aa11.24□□□□□ -0.61
VPS4B-204ENST00000589604 TBKBP1A7MCY6 615 aa11.24□□□□□ -0.61
VPS4B-204ENST00000589604 F8VZ95 297 aa11.24□□□□□ -0.61
VPS4B-204ENST00000589604 FOXN3O00409 490 aaPredicted RBP11.24□□□□□ -0.61
VPS4B-204ENST00000589604 NDUFA10O95299 355 aa11.24□□□□□ -0.61
VPS4B-204ENST00000589604 SERPING1P05155 500 aa11.24□□□□□ -0.61
VPS4B-204ENST00000589604 NFICP08651 508 aa11.24□□□□□ -0.61
VPS4B-204ENST00000589604 RFX1P22670 979 aa11.24□□□□□ -0.61
VPS4B-204ENST00000589604 IGFBP6P24592 240 aaPredicted RBP11.24□□□□□ -0.61
VPS4B-204ENST00000589604 EIF4A3P38919 411 aaKnown RBP11.24□□□□□ -0.61
VPS4B-204ENST00000589604 PRKCIP41743 596 aa11.24□□□□□ -0.61
VPS4B-204ENST00000589604 SCNN1GP51170 649 aa11.24□□□□□ -0.61
VPS4B-204ENST00000589604 AP3M2P53677 418 aa11.24□□□□□ -0.61
VPS4B-204ENST00000589604 RAPGEF1Q13905 1077 aa11.24□□□□□ -0.61
VPS4B-204ENST00000589604 NAB2Q15742 525 aa11.24□□□□□ -0.61
VPS4B-204ENST00000589604 FAM43BQ6ZT52 329 aaPredicted RBP11.24□□□□□ -0.61
VPS4B-204ENST00000589604 TRAPPC11Q7Z392 1133 aa11.24□□□□□ -0.61
VPS4B-204ENST00000589604 ZNF280BQ86YH2 543 aa11.24□□□□□ -0.61
VPS4B-204ENST00000589604 CCDC170Q8IYT3 715 aa11.24□□□□□ -0.61
VPS4B-204ENST00000589604 ACRBPQ8NEB7 543 aa11.24□□□□□ -0.61
VPS4B-204ENST00000589604 PPP1R13BQ96KQ4 1090 aa11.24□□□□□ -0.61
VPS4B-204ENST00000589604 ZMAT2Q96NC0 199 aaKnown RBP11.24□□□□□ -0.61
VPS4B-204ENST00000589604 SYT11Q9BT88 431 aa11.24□□□□□ -0.61
VPS4B-204ENST00000589604 ZBED2Q9BTP6 218 aa11.24□□□□□ -0.61
VPS4B-204ENST00000589604 MTMR12Q9C0I1 747 aa11.24□□□□□ -0.61
VPS4B-204ENST00000589604 ASB7Q9H672 318 aa11.24□□□□□ -0.61
VPS4B-204ENST00000589604 RSAD1Q9HA92 442 aa11.24□□□□□ -0.61
VPS4B-204ENST00000589604 TRMT1Q9NXH9 659 aaKnown RBP11.24□□□□□ -0.61
VPS4B-204ENST00000589604 CACNG4Q9UBN1 327 aa11.24□□□□□ -0.61
VPS4B-204ENST00000589604 PARP2Q9UGN5 583 aa11.24□□□□□ -0.61
VPS4B-204ENST00000589604 SIX4Q9UIU6 781 aa11.24□□□□□ -0.61
VPS4B-204ENST00000589604 INPP5FQ9Y2H2 1132 aa11.24□□□□□ -0.61
VPS4B-204ENST00000589604 PCDHA11Q9Y5I1 949 aa11.24□□□□□ -0.61
VPS4B-204ENST00000589604 MRPL42Q9Y6G3 142 aaKnown RBP11.24□□□□□ -0.61
VPS4B-204ENST00000589604 MYH10P35580 1976 aa11.23□□□□□ -0.61
VPS4B-204ENST00000589604 SSU72P8A0A1W2PR75 194 aa11.23□□□□□ -0.61
VPS4B-204ENST00000589604 LINC01553A4QN01 128 aa11.23□□□□□ -0.61
VPS4B-204ENST00000589604 INPPL1O15357 1258 aa11.23□□□□□ -0.61
VPS4B-204ENST00000589604 ZC3H11AO75152 810 aaKnown RBP eCLIP11.23□□□□□ -0.61
VPS4B-204ENST00000589604 DDHD2O94830 711 aa11.23□□□□□ -0.61
VPS4B-204ENST00000589604 LCA5LO95447 670 aa11.23□□□□□ -0.61
VPS4B-204ENST00000589604 POMCP01189 267 aa11.23□□□□□ -0.61
VPS4B-204ENST00000589604 DNAJB2P25686 324 aa11.23□□□□□ -0.61
VPS4B-204ENST00000589604 SOX5P35711 763 aa11.23□□□□□ -0.61
VPS4B-204ENST00000589604 PBX3P40426 434 aa11.23□□□□□ -0.61
VPS4B-204ENST00000589604 SMAD3P84022 425 aaKnown RBP11.23□□□□□ -0.61
VPS4B-204ENST00000589604 TAP1Q03518 808 aa11.23□□□□□ -0.61
Retrieved 100 of 20,778 RNA–protein pairs in 24.5 ms