RNA–Protein interactions for RNA: ENST00000585370.1

LIG3-203, Transcript of DNA ligase 3, humanhuman

TSL 3

Gene LIG3, Length 235 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-203ENST00000585370 TCEAL1Q15170 157 aa11.14□□□□□ -0.63
LIG3-203ENST00000585370 ZBTB41Q5SVQ8 909 aa11.14□□□□□ -0.63
LIG3-203ENST00000585370 EEF1DP3Q658K8 133 aa11.14□□□□□ -0.63
LIG3-203ENST00000585370 TRAPPC11Q7Z392 1133 aa11.14□□□□□ -0.63
LIG3-203ENST00000585370 RSPH3Q86UC2 560 aa11.14□□□□□ -0.63
LIG3-203ENST00000585370 SYCE1Q8N0S2 351 aa11.14□□□□□ -0.63
LIG3-203ENST00000585370 PPM1EQ8WY54 764 aa11.14□□□□□ -0.63
LIG3-203ENST00000585370 RPGRIP1Q96KN7 1286 aa11.14□□□□□ -0.63
LIG3-203ENST00000585370 ACAP3Q96P50 834 aa11.14□□□□□ -0.63
LIG3-203ENST00000585370 GAS2L1Q99501 681 aaPredicted RBP11.14□□□□□ -0.63
LIG3-203ENST00000585370 MTIF3Q9H2K0 278 aaKnown RBP11.14□□□□□ -0.63
LIG3-203ENST00000585370 PDZD7Q9H5P4 517 aa11.14□□□□□ -0.63
LIG3-203ENST00000585370 RNF14Q9UBS8 474 aa11.14□□□□□ -0.63
LIG3-203ENST00000585370 TRIM10Q9UDY6 481 aa11.14□□□□□ -0.63
LIG3-203ENST00000585370 CNTN6Q9UQ52 1028 aa11.14□□□□□ -0.63
LIG3-203ENST00000585370 DERAQ9Y315 318 aa11.14□□□□□ -0.63
LIG3-203ENST00000585370 PCDHB2Q9Y5E7 798 aa11.14□□□□□ -0.63
LIG3-203ENST00000585370 SAR1BQ9Y6B6 198 aa11.14□□□□□ -0.63
LIG3-203ENST00000585370 SLC4A7Q9Y6M7 1214 aa11.14□□□□□ -0.63
LIG3-203ENST00000585370 DUSP10Q9Y6W6 482 aa11.14□□□□□ -0.63
LIG3-203ENST00000585370 EVPLQ92817 2033 aa11.13□□□□□ -0.63
LIG3-203ENST00000585370 GBF1Q92538 1859 aa11.13□□□□□ -0.63
LIG3-203ENST00000585370 FANCGO15287 622 aa11.13□□□□□ -0.63
LIG3-203ENST00000585370 CYP26A1O43174 497 aa11.13□□□□□ -0.63
LIG3-203ENST00000585370 B4GALT5O43286 388 aa11.13□□□□□ -0.63
LIG3-203ENST00000585370 TSPAN1O60635 241 aa11.13□□□□□ -0.63
LIG3-203ENST00000585370 LRRN2O75325 713 aa11.13□□□□□ -0.63
LIG3-203ENST00000585370 MOCS3O95396 460 aa11.13□□□□□ -0.63
LIG3-203ENST00000585370 ASS1P00966 412 aaKnown RBP11.13□□□□□ -0.63
LIG3-203ENST00000585370 IQCF3P0C7M6 154 aa11.13□□□□□ -0.63
LIG3-203ENST00000585370 DARSP14868 501 aaKnown RBP11.13□□□□□ -0.63
LIG3-203ENST00000585370 CYP11B1P15538 503 aa11.13□□□□□ -0.63
LIG3-203ENST00000585370 EIF4BP23588 611 aaKnown RBP11.13□□□□□ -0.63
LIG3-203ENST00000585370 TNFSF9P41273 254 aa11.13□□□□□ -0.63
LIG3-203ENST00000585370 GRM5P41594 1212 aa11.13□□□□□ -0.63
LIG3-203ENST00000585370 PDE6CP51160 858 aa11.13□□□□□ -0.63
LIG3-203ENST00000585370 CRYBB1P53674 252 aaPredicted RBP11.13□□□□□ -0.63
LIG3-203ENST00000585370 AMPD2Q01433 879 aa11.13□□□□□ -0.63
LIG3-203ENST00000585370 CDR2Q01850 454 aa11.13□□□□□ -0.63
LIG3-203ENST00000585370 CKAP4Q07065 602 aaKnown RBP11.13□□□□□ -0.63
LIG3-203ENST00000585370 CUL2Q13617 745 aa11.13□□□□□ -0.63
LIG3-203ENST00000585370 NOTUMQ6P988 496 aa11.13□□□□□ -0.63
LIG3-203ENST00000585370 SLC27A1Q6PCB7 646 aa11.13□□□□□ -0.63
LIG3-203ENST00000585370 TRIM72Q6ZMU5 477 aa11.13□□□□□ -0.63
LIG3-203ENST00000585370 CATSPER4Q7RTX7 472 aa11.13□□□□□ -0.63
LIG3-203ENST00000585370 DEFB128Q7Z7B8 93 aa11.13□□□□□ -0.63
LIG3-203ENST00000585370 RPAINQ86UA6 219 aa11.13□□□□□ -0.63
LIG3-203ENST00000585370 GLYCTKQ8IVS8 523 aa11.13□□□□□ -0.63
LIG3-203ENST00000585370 TTC39CQ8N584 583 aa11.13□□□□□ -0.63
LIG3-203ENST00000585370 LNX1Q8TBB1 728 aaPredicted RBP11.13□□□□□ -0.63
LIG3-203ENST00000585370 CTNNBL1Q8WYA6 563 aaPredicted RBP11.13□□□□□ -0.63
LIG3-203ENST00000585370 UBXN4Q92575 508 aa11.13□□□□□ -0.63
LIG3-203ENST00000585370 ZBTB10Q96DT7 871 aa11.13□□□□□ -0.63
LIG3-203ENST00000585370 FAM212AQ96EL1 285 aa11.13□□□□□ -0.63
LIG3-203ENST00000585370 CCDC94Q9BW85 323 aaPredicted RBP11.13□□□□□ -0.63
LIG3-203ENST00000585370 ISCUQ9H1K1 167 aa11.13□□□□□ -0.63
LIG3-203ENST00000585370 SLC28A3Q9HAS3 691 aa11.13□□□□□ -0.63
LIG3-203ENST00000585370 C2CD2Q9Y426 696 aa11.13□□□□□ -0.63
LIG3-203ENST00000585370 PCDHGC5Q9Y5F6 944 aa11.13□□□□□ -0.63
LIG3-203ENST00000585370 SCN5AQ14524 2016 aa11.13□□□□□ -0.63
LIG3-203ENST00000585370 TET1Q8NFU7 2136 aa11.12□□□□□ -0.63
LIG3-203ENST00000585370 ZBBXA8MT70 800 aa11.12□□□□□ -0.63
LIG3-203ENST00000585370 M0QZ92 97 aa11.12□□□□□ -0.63
LIG3-203ENST00000585370 KRT5P13647 590 aa11.12□□□□□ -0.63
LIG3-203ENST00000585370 P4HA1P13674 534 aa11.12□□□□□ -0.63
LIG3-203ENST00000585370 ATP2A2P16615 1042 aaKnown RBP11.12□□□□□ -0.63
LIG3-203ENST00000585370 IGFBP4P22692 258 aa11.12□□□□□ -0.63
LIG3-203ENST00000585370 GALCP54803 685 aa11.12□□□□□ -0.63
LIG3-203ENST00000585370 HADHBP55084 474 aaKnown RBP11.12□□□□□ -0.63
LIG3-203ENST00000585370 WNT7BP56706 349 aa11.12□□□□□ -0.63
LIG3-203ENST00000585370 NOP14P78316 857 aaKnown RBP11.12□□□□□ -0.63
LIG3-203ENST00000585370 TFAMQ00059 246 aaKnown RBP11.12□□□□□ -0.63
LIG3-203ENST00000585370 CCDC85BQ15834 202 aaPredicted RBP11.12□□□□□ -0.63
LIG3-203ENST00000585370 FAM47CQ5HY64 1035 aa11.12□□□□□ -0.63
LIG3-203ENST00000585370 TJAP1Q5JTD0 557 aa11.12□□□□□ -0.63
LIG3-203ENST00000585370 LMBRD2Q68DH5 695 aaPredicted RBP11.12□□□□□ -0.63
LIG3-203ENST00000585370 SESTD1Q86VW0 696 aa11.12□□□□□ -0.63
LIG3-203ENST00000585370 RHOT2Q8IXI1 618 aa11.12□□□□□ -0.63
LIG3-203ENST00000585370 OR5B17Q8NGF7 314 aa11.12□□□□□ -0.63
LIG3-203ENST00000585370 EPS8L1Q8TE68 723 aa11.12□□□□□ -0.63
LIG3-203ENST00000585370 ZNF668Q96K58 619 aaPredicted RBP11.12□□□□□ -0.63
LIG3-203ENST00000585370 PI4K2AQ9BTU6 479 aa11.12□□□□□ -0.63
LIG3-203ENST00000585370 CARD6Q9BX69 1037 aa11.12□□□□□ -0.63
LIG3-203ENST00000585370 FAM49AQ9H0Q0 323 aaPredicted RBP11.12□□□□□ -0.63
LIG3-203ENST00000585370 HDAC6Q9UBN7 1215 aa11.12□□□□□ -0.63
LIG3-203ENST00000585370 NOCTQ9UK39 431 aaKnown RBP11.12□□□□□ -0.63
LIG3-203ENST00000585370 GTF3C5Q9Y5Q8 519 aaPredicted RBP11.12□□□□□ -0.63
LIG3-203ENST00000585370 NCANO14594 1321 aa11.11□□□□□ -0.63
LIG3-203ENST00000585370 PRRC2BQ5JSZ5 2229 aaKnown RBP11.11□□□□□ -0.63
LIG3-203ENST00000585370 TRIP12Q14669 1992 aaPredicted RBP11.11□□□□□ -0.63
LIG3-203ENST00000585370 LACTBL1A8MY62 500 aa11.11□□□□□ -0.63
LIG3-203ENST00000585370 PITPNM1O00562 1244 aa11.11□□□□□ -0.63
LIG3-203ENST00000585370 CES2O00748 559 aa11.11□□□□□ -0.63
LIG3-203ENST00000585370 TREHO43280 583 aa11.11□□□□□ -0.63
LIG3-203ENST00000585370 STAU1O95793 577 aaKnown RBP11.11□□□□□ -0.63
LIG3-203ENST00000585370 FTLP02792 175 aaPredicted RBP11.11□□□□□ -0.63
LIG3-203ENST00000585370 TUBBP07437 444 aa11.11□□□□□ -0.63
LIG3-203ENST00000585370 PFKMP08237 780 aa11.11□□□□□ -0.63
LIG3-203ENST00000585370 PNMA6AP0CW24 399 aaPredicted RBP11.11□□□□□ -0.63
LIG3-203ENST00000585370 NOP2P46087 812 aaKnown RBP11.11□□□□□ -0.63
Retrieved 100 of 20,778 RNA–protein pairs in 22.2 ms