RNA–Protein interactions for RNA: ENST00000580642.2

SS18-215, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 4

Gene SS18, Length 545 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-215ENST00000580642 MEIS3P2A8K0S8 358 aa16.36■□□□□ 0.21
SS18-215ENST00000580642 TMEM189-UBE2V1I3L0A0 370 aa16.36■□□□□ 0.21
SS18-215ENST00000580642 EVI5O60447 810 aa16.36■□□□□ 0.21
SS18-215ENST00000580642 LRRN2O75325 713 aa16.36■□□□□ 0.21
SS18-215ENST00000580642 TACC1O75410 805 aa16.36■□□□□ 0.21
SS18-215ENST00000580642 IPO7O95373 1038 aaKnown RBP16.36■□□□□ 0.21
SS18-215ENST00000580642 AMHP03971 560 aa16.36■□□□□ 0.21
SS18-215ENST00000580642 ACO1P21399 889 aaKnown RBP16.36■□□□□ 0.21
SS18-215ENST00000580642 DSC1Q08554 894 aa16.36■□□□□ 0.21
SS18-215ENST00000580642 INCA1Q0VD86 236 aa16.36■□□□□ 0.21
SS18-215ENST00000580642 UPP1Q16831 310 aa16.36■□□□□ 0.21
SS18-215ENST00000580642 CLLU1OSQ5K130 101 aa16.36■□□□□ 0.21
SS18-215ENST00000580642 DCLRE1AQ6PJP8 1040 aa16.36■□□□□ 0.21
SS18-215ENST00000580642 LIMS2Q7Z4I7 341 aa16.36■□□□□ 0.21
SS18-215ENST00000580642 ZSCAN30Q86W11 494 aa16.36■□□□□ 0.21
SS18-215ENST00000580642 TXLNBQ8N3L3 684 aa16.36■□□□□ 0.21
SS18-215ENST00000580642 VWCEQ96DN2 955 aa16.36■□□□□ 0.21
SS18-215ENST00000580642 CXCL16Q9H2A7 254 aa16.36■□□□□ 0.21
SS18-215ENST00000580642 NHEJ1Q9H9Q4 299 aaPredicted RBP16.36■□□□□ 0.21
SS18-215ENST00000580642 RNF19AQ9NV58 838 aa16.36■□□□□ 0.21
SS18-215ENST00000580642 AJAP1Q9UKB5 411 aaPredicted RBP16.36■□□□□ 0.21
SS18-215ENST00000580642 KIAA1257Q9ULG3 409 aa16.36■□□□□ 0.21
SS18-215ENST00000580642 DNAH12Q6ZR08 3092 aa16.36■□□□□ 0.21
SS18-215ENST00000580642 KPNA7A9QM74 516 aa16.35■□□□□ 0.21
SS18-215ENST00000580642 EIF3CLB5ME19 914 aaKnown RBP16.35■□□□□ 0.21
SS18-215ENST00000580642 CAPN15O75808 1086 aa16.35■□□□□ 0.21
SS18-215ENST00000580642 LCA5LO95447 670 aa16.35■□□□□ 0.21
SS18-215ENST00000580642 CSF2RAP15509 400 aa16.35■□□□□ 0.21
SS18-215ENST00000580642 AARSP49588 968 aaKnown RBP eCLIP16.35■□□□□ 0.21
SS18-215ENST00000580642 ZNF132P52740 706 aa16.35■□□□□ 0.21
SS18-215ENST00000580642 LILRA4P59901 499 aa16.35■□□□□ 0.21
SS18-215ENST00000580642 PTK2Q05397 1052 aa16.35■□□□□ 0.21
SS18-215ENST00000580642 SOX4Q06945 474 aaPredicted RBP16.35■□□□□ 0.21
SS18-215ENST00000580642 GOLGA8FQ08AF8 430 aa16.35■□□□□ 0.21
SS18-215ENST00000580642 GOLGA8DPQ0D2H9 430 aa16.35■□□□□ 0.21
SS18-215ENST00000580642 BMS1Q14692 1282 aaKnown RBP16.35■□□□□ 0.21
SS18-215ENST00000580642 C10orf76Q5T2E6 689 aa16.35■□□□□ 0.21
SS18-215ENST00000580642 SPOPLQ6IQ16 392 aa16.35■□□□□ 0.21
SS18-215ENST00000580642 PPP1R2P3Q6NXS1 205 aa16.35■□□□□ 0.21
SS18-215ENST00000580642 UNC93AQ86WB7 457 aa16.35■□□□□ 0.21
SS18-215ENST00000580642 TOP6BLQ8N6T0 577 aa16.35■□□□□ 0.21
SS18-215ENST00000580642 TOP1MTQ969P6 601 aa16.35■□□□□ 0.21
SS18-215ENST00000580642 FAM84AQ96KN4 292 aa16.35■□□□□ 0.21
SS18-215ENST00000580642 EIF3CQ99613 913 aaKnown RBP16.35■□□□□ 0.21
SS18-215ENST00000580642 TMEM175Q9BSA9 504 aa16.35■□□□□ 0.21
SS18-215ENST00000580642 DEF6Q9H4E7 631 aa16.35■□□□□ 0.21
SS18-215ENST00000580642 LUC7LQ9NQ29 371 aaKnown RBP16.35■□□□□ 0.21
SS18-215ENST00000580642 CISHQ9NSE2 258 aa16.35■□□□□ 0.21
SS18-215ENST00000580642 MIOSQ9NXC5 875 aa16.35■□□□□ 0.21
SS18-215ENST00000580642 ARHGAP20Q9P2F6 1191 aa16.35■□□□□ 0.21
SS18-215ENST00000580642 EPN1Q9Y6I3 576 aaPredicted RBP16.35■□□□□ 0.21
SS18-215ENST00000580642 RBAK-RBAKDNI3L0D1 243 aa16.34■□□□□ 0.21
SS18-215ENST00000580642 PODXLO00592 558 aa16.34■□□□□ 0.21
SS18-215ENST00000580642 CLSTN1O94985 981 aa16.34■□□□□ 0.21
SS18-215ENST00000580642 PAEPP09466 180 aa16.34■□□□□ 0.21
SS18-215ENST00000580642 ITGB8P26012 769 aa16.34■□□□□ 0.21
SS18-215ENST00000580642 GUCY2FP51841 1108 aa16.34■□□□□ 0.21
SS18-215ENST00000580642 KRT83P78385 493 aa16.34■□□□□ 0.21
SS18-215ENST00000580642 FPGSQ05932 587 aa16.34■□□□□ 0.21
SS18-215ENST00000580642 ASTE1Q2TB18 679 aaPredicted RBP16.34■□□□□ 0.21
SS18-215ENST00000580642 E4F1Q66K89 784 aaPredicted RBP16.34■□□□□ 0.21
SS18-215ENST00000580642 PSRC1Q6PGN9 363 aaPredicted RBP16.34■□□□□ 0.21
SS18-215ENST00000580642 TMEM86AQ8N2M4 240 aa16.34■□□□□ 0.21
SS18-215ENST00000580642 KIAA1524Q8TCG1 905 aa16.34■□□□□ 0.21
SS18-215ENST00000580642 KAT5Q92993 513 aa16.34■□□□□ 0.21
SS18-215ENST00000580642 ABHD8Q96I13 439 aa16.34■□□□□ 0.21
SS18-215ENST00000580642 ZNF830Q96NB3 372 aaPredicted RBP16.34■□□□□ 0.21
SS18-215ENST00000580642 CASD1Q96PB1 797 aa16.34■□□□□ 0.21
SS18-215ENST00000580642 FAM193BQ96PV7 902 aaPredicted RBP16.34■□□□□ 0.21
SS18-215ENST00000580642 CHP1Q99653 195 aa16.34■□□□□ 0.21
SS18-215ENST00000580642 HAUS4Q9H6D7 363 aa16.34■□□□□ 0.21
SS18-215ENST00000580642 NXF1Q9UBU9 619 aaKnown RBP16.34■□□□□ 0.21
SS18-215ENST00000580642 BARX2Q9UMQ3 279 aaPredicted RBP16.34■□□□□ 0.21
SS18-215ENST00000580642 PCDHB4Q9Y5E5 795 aa16.34■□□□□ 0.21
SS18-215ENST00000580642 ATP8B3O60423 1300 aa16.34■□□□□ 0.21
SS18-215ENST00000580642 GOLGA6L9A6NEM1 432 aa16.33■□□□□ 0.2
SS18-215ENST00000580642 ZSCAN12O43309 604 aa16.33■□□□□ 0.2
SS18-215ENST00000580642 NDUFA10O95299 355 aa16.33■□□□□ 0.2
SS18-215ENST00000580642 POMCP01189 267 aa16.33■□□□□ 0.2
SS18-215ENST00000580642 KRT5P13647 590 aa16.33■□□□□ 0.2
SS18-215ENST00000580642 CLCN1P35523 988 aa16.33■□□□□ 0.2
SS18-215ENST00000580642 PDE6CP51160 858 aa16.33■□□□□ 0.2
SS18-215ENST00000580642 SPA17Q15506 151 aa16.33■□□□□ 0.2
SS18-215ENST00000580642 SLC18A3Q16572 532 aa16.33■□□□□ 0.2
SS18-215ENST00000580642 TCTN1Q2MV58 587 aa16.33■□□□□ 0.2
SS18-215ENST00000580642 TDRD12Q587J7 1177 aaKnown RBP16.33■□□□□ 0.2
SS18-215ENST00000580642 LRRC43Q8N309 656 aa16.33■□□□□ 0.2
SS18-215ENST00000580642 APPL2Q8NEU8 664 aa16.33■□□□□ 0.2
SS18-215ENST00000580642 SYT11Q9BT88 431 aa16.33■□□□□ 0.2
SS18-215ENST00000580642 TBC1D13Q9NVG8 400 aa16.33■□□□□ 0.2
SS18-215ENST00000580642 DSEQ9UL01 958 aa16.33■□□□□ 0.2
SS18-215ENST00000580642 INPP5FQ9Y2H2 1132 aa16.33■□□□□ 0.2
SS18-215ENST00000580642 SNX9Q9Y5X1 595 aa16.33■□□□□ 0.2
SS18-215ENST00000580642 PDCD11Q14690 1871 aaKnown RBP16.33■□□□□ 0.2
SS18-215ENST00000580642 TTC3P53804 2025 aa16.33■□□□□ 0.2
SS18-215ENST00000580642 SOWAHDA6NJG2 315 aa16.32■□□□□ 0.2
SS18-215ENST00000580642 CYP26A1O43174 497 aa16.32■□□□□ 0.2
SS18-215ENST00000580642 TRAPPC3O43617 180 aa16.32■□□□□ 0.2
SS18-215ENST00000580642 AKR1B10O60218 316 aa16.32■□□□□ 0.2
SS18-215ENST00000580642 HUS1O60921 280 aa16.32■□□□□ 0.2
Retrieved 100 of 20,778 RNA–protein pairs in 16.7 ms