RNA–Protein interactions for RNA: ENST00000577636.5

SS18-207, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 3

Gene SS18, Length 580 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-207ENST00000577636 ARHGAP6O43182 974 aa11□□□□□ -0.65
SS18-207ENST00000577636 ZSCAN12O43309 604 aa11□□□□□ -0.65
SS18-207ENST00000577636 MFAP3LO75121 409 aa11□□□□□ -0.65
SS18-207ENST00000577636 DDHD2O94830 711 aa11□□□□□ -0.65
SS18-207ENST00000577636 POMCP01189 267 aa11□□□□□ -0.65
SS18-207ENST00000577636 SPATA31D3P0C874 917 aa11□□□□□ -0.65
SS18-207ENST00000577636 CASP14P31944 242 aa11□□□□□ -0.65
SS18-207ENST00000577636 MAPK7Q13164 816 aa11□□□□□ -0.65
SS18-207ENST00000577636 ARID5BQ14865 1188 aa11□□□□□ -0.65
SS18-207ENST00000577636 NFIL3Q16649 462 aa11□□□□□ -0.65
SS18-207ENST00000577636 ZC2HC1CQ53FD0 456 aaPredicted RBP11□□□□□ -0.65
SS18-207ENST00000577636 CEP135Q66GS9 1140 aa11□□□□□ -0.65
SS18-207ENST00000577636 SPATA31D4Q6ZUB0 917 aa11□□□□□ -0.65
SS18-207ENST00000577636 KSR1Q8IVT5 923 aa11□□□□□ -0.65
SS18-207ENST00000577636 ZC3H3Q8IXZ2 948 aaKnown RBP11□□□□□ -0.65
SS18-207ENST00000577636 DAW1Q8N136 415 aa11□□□□□ -0.65
SS18-207ENST00000577636 NEK11Q8NG66 645 aa11□□□□□ -0.65
SS18-207ENST00000577636 PGBD4Q96DM1 585 aa11□□□□□ -0.65
SS18-207ENST00000577636 ERGIC2Q96RQ1 377 aa11□□□□□ -0.65
SS18-207ENST00000577636 MKNK1Q9BUB5 465 aa11□□□□□ -0.65
SS18-207ENST00000577636 VN1R3Q9BXE9 311 aa11□□□□□ -0.65
SS18-207ENST00000577636 NIFKQ9BYG3 293 aaKnown RBP11□□□□□ -0.65
SS18-207ENST00000577636 INO80BQ9C086 356 aaPredicted RBP11□□□□□ -0.65
SS18-207ENST00000577636 POLD4Q9HCU8 107 aa11□□□□□ -0.65
SS18-207ENST00000577636 MAN1C1Q9NR34 630 aa11□□□□□ -0.65
SS18-207ENST00000577636 MRPL17Q9NRX2 175 aaKnown RBP11□□□□□ -0.65
SS18-207ENST00000577636 IGSF9Q9P2J2 1179 aa11□□□□□ -0.65
SS18-207ENST00000577636 SUCLA2Q9P2R7 463 aaPredicted RBP11□□□□□ -0.65
SS18-207ENST00000577636 PYCARDQ9ULZ3 195 aa11□□□□□ -0.65
SS18-207ENST00000577636 RIF1Q5UIP0 2472 aaKnown RBP10.99□□□□□ -0.65
SS18-207ENST00000577636 CARNS1A5YM72 827 aa10.99□□□□□ -0.65
SS18-207ENST00000577636 NRP1O14786 923 aa10.99□□□□□ -0.65
SS18-207ENST00000577636 INPPL1O15357 1258 aa10.99□□□□□ -0.65
SS18-207ENST00000577636 GAS2O43903 313 aaKnown RBP10.99□□□□□ -0.65
SS18-207ENST00000577636 B4GALT3O60512 393 aa10.99□□□□□ -0.65
SS18-207ENST00000577636 EXOC3O60645 756 aa10.99□□□□□ -0.65
SS18-207ENST00000577636 N4BP1O75113 896 aaKnown RBP10.99□□□□□ -0.65
SS18-207ENST00000577636 KRT13P13646 458 aa10.99□□□□□ -0.65
SS18-207ENST00000577636 AFF1P51825 1210 aaKnown RBP10.99□□□□□ -0.65
SS18-207ENST00000577636 NCKAP1LP55160 1127 aa10.99□□□□□ -0.65
SS18-207ENST00000577636 ADKP55263 362 aaKnown RBP10.99□□□□□ -0.65
SS18-207ENST00000577636 CCZ1BP86790 482 aa10.99□□□□□ -0.65
SS18-207ENST00000577636 CCZ1P86791 482 aaPredicted RBP10.99□□□□□ -0.65
SS18-207ENST00000577636 GTF2BQ00403 316 aa10.99□□□□□ -0.65
SS18-207ENST00000577636 CDC42EP1Q00587 391 aa10.99□□□□□ -0.65
SS18-207ENST00000577636 STRN3Q13033 797 aa10.99□□□□□ -0.65
SS18-207ENST00000577636 EMC2Q15006 297 aa10.99□□□□□ -0.65
SS18-207ENST00000577636 SYCP1Q15431 976 aa10.99□□□□□ -0.65
SS18-207ENST00000577636 FIGNQ5HY92 759 aa10.99□□□□□ -0.65
SS18-207ENST00000577636 PDZRN4Q6ZMN7 1036 aaPredicted RBP10.99□□□□□ -0.65
SS18-207ENST00000577636 TAS1R1Q7RTX1 841 aa10.99□□□□□ -0.65
SS18-207ENST00000577636 USP37Q86T82 979 aa10.99□□□□□ -0.65
SS18-207ENST00000577636 FAM186BQ8IYM0 893 aa10.99□□□□□ -0.65
SS18-207ENST00000577636 SLC44A3Q8N4M1 653 aa10.99□□□□□ -0.65
SS18-207ENST00000577636 DCLK2Q8N568 766 aa10.99□□□□□ -0.65
SS18-207ENST00000577636 TCP11Q8WWU5 503 aa10.99□□□□□ -0.65
SS18-207ENST00000577636 POLR3FQ9H1D9 316 aaPredicted RBP10.99□□□□□ -0.65
SS18-207ENST00000577636 MMRN2Q9H8L6 949 aa10.99□□□□□ -0.65
SS18-207ENST00000577636 TBC1D17Q9HA65 648 aa10.99□□□□□ -0.65
SS18-207ENST00000577636 PIDD1Q9HB75 910 aa10.99□□□□□ -0.65
SS18-207ENST00000577636 RRAGDQ9NQL2 400 aaPredicted RBP10.99□□□□□ -0.65
SS18-207ENST00000577636 AGPAT3Q9NRZ7 376 aa10.99□□□□□ -0.65
SS18-207ENST00000577636 WNT16Q9UBV4 365 aa10.99□□□□□ -0.65
SS18-207ENST00000577636 PRG3Q9Y2Y8 225 aaPredicted RBP10.99□□□□□ -0.65
SS18-207ENST00000577636 PCDHB2Q9Y5E7 798 aa10.99□□□□□ -0.65
SS18-207ENST00000577636 FAM186AA6NE01 2351 aa10.99□□□□□ -0.65
SS18-207ENST00000577636 PHLPP2Q6ZVD8 1323 aa10.99□□□□□ -0.65
SS18-207ENST00000577636 A0A1W2PQJ5 194 aa10.98□□□□□ -0.65
SS18-207ENST00000577636 GOLGA6L9A6NEM1 432 aa10.98□□□□□ -0.65
SS18-207ENST00000577636 KIF2AO00139 706 aaPredicted RBP10.98□□□□□ -0.65
SS18-207ENST00000577636 CLIC2O15247 247 aa10.98□□□□□ -0.65
SS18-207ENST00000577636 SLC16A4O15374 487 aa10.98□□□□□ -0.65
SS18-207ENST00000577636 RFPL2O75678 378 aa10.98□□□□□ -0.65
SS18-207ENST00000577636 AFPP02771 609 aaKnown RBP10.98□□□□□ -0.65
SS18-207ENST00000577636 GYPCP04921 128 aa10.98□□□□□ -0.65
SS18-207ENST00000577636 URODP06132 367 aa10.98□□□□□ -0.65
SS18-207ENST00000577636 KRT9P35527 623 aa10.98□□□□□ -0.65
SS18-207ENST00000577636 OR1G1P47890 313 aa10.98□□□□□ -0.65
SS18-207ENST00000577636 NPTX2P47972 431 aa10.98□□□□□ -0.65
SS18-207ENST00000577636 CETN1Q12798 172 aa10.98□□□□□ -0.65
SS18-207ENST00000577636 TARBP2Q15633 366 aaKnown RBP10.98□□□□□ -0.65
SS18-207ENST00000577636 DCAF17Q5H9S7 520 aaPredicted RBP10.98□□□□□ -0.65
SS18-207ENST00000577636 MIIPQ5JXC2 388 aa10.98□□□□□ -0.65
SS18-207ENST00000577636 TCERG1LQ5VWI1 586 aa10.98□□□□□ -0.65
SS18-207ENST00000577636 CYP26C1Q6V0L0 522 aa10.98□□□□□ -0.65
SS18-207ENST00000577636 AGMOQ6ZNB7 445 aa10.98□□□□□ -0.65
SS18-207ENST00000577636 C15orf39Q6ZRI6 1047 aa10.98□□□□□ -0.65
SS18-207ENST00000577636 CACNA2D4Q7Z3S7 1137 aa10.98□□□□□ -0.65
SS18-207ENST00000577636 PALB2Q86YC2 1186 aa10.98□□□□□ -0.65
SS18-207ENST00000577636 TMTC1Q8IUR5 882 aa10.98□□□□□ -0.65
SS18-207ENST00000577636 SLC9A9Q8IVB4 645 aa10.98□□□□□ -0.65
SS18-207ENST00000577636 GLYCTKQ8IVS8 523 aa10.98□□□□□ -0.65
SS18-207ENST00000577636 TRIM59Q8IWR1 403 aa10.98□□□□□ -0.65
SS18-207ENST00000577636 TC2NQ8N9U0 490 aa10.98□□□□□ -0.65
SS18-207ENST00000577636 OR8K1Q8NGG5 319 aa10.98□□□□□ -0.65
SS18-207ENST00000577636 DEPTORQ8TB45 409 aa10.98□□□□□ -0.65
SS18-207ENST00000577636 GPR152Q8TDT2 470 aa10.98□□□□□ -0.65
SS18-207ENST00000577636 SMG7Q92540 1137 aaKnown RBP10.98□□□□□ -0.65
SS18-207ENST00000577636 BICD1Q96G01 975 aa10.98□□□□□ -0.65
SS18-207ENST00000577636 MYADMQ96S97 322 aa10.98□□□□□ -0.65
Retrieved 100 of 20,778 RNA–protein pairs in 16.5 ms