RNA–Protein interactions for RNA: ENST00000576019.5

VPS53-219, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 3

Gene VPS53, Length 613 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-219ENST00000576019 TRIM38O00635 465 aa6.62□□□□□ -1.35
VPS53-219ENST00000576019 CYP27B1O15528 508 aa6.62□□□□□ -1.35
VPS53-219ENST00000576019 PRPF6O94906 941 aaKnown RBP6.62□□□□□ -1.35
VPS53-219ENST00000576019 C4BPAP04003 597 aaKnown RBP6.62□□□□□ -1.35
VPS53-219ENST00000576019 THP07101 528 aa6.62□□□□□ -1.35
VPS53-219ENST00000576019 MMEP08473 750 aa6.62□□□□□ -1.35
VPS53-219ENST00000576019 FAM87AP0C7U9 286 aa6.62□□□□□ -1.35
VPS53-219ENST00000576019 SRFP11831 508 aa6.62□□□□□ -1.35
VPS53-219ENST00000576019 CKMT1AP12532 417 aa6.62□□□□□ -1.35
VPS53-219ENST00000576019 ATP1A3P13637 1013 aa6.62□□□□□ -1.35
VPS53-219ENST00000576019 PTPN1P18031 435 aaKnown RBP6.62□□□□□ -1.35
VPS53-219ENST00000576019 RPL17P18621 184 aaKnown RBP6.62□□□□□ -1.35
VPS53-219ENST00000576019 SDHAP31040 664 aa6.62□□□□□ -1.35
VPS53-219ENST00000576019 RAC1P63000 192 aa6.62□□□□□ -1.35
VPS53-219ENST00000576019 PPARAQ07869 468 aa6.62□□□□□ -1.35
VPS53-219ENST00000576019 FGL2Q14314 439 aa6.62□□□□□ -1.35
VPS53-219ENST00000576019 MYBPC3Q14896 1274 aa6.62□□□□□ -1.35
VPS53-219ENST00000576019 TIGD6Q17RP2 521 aa6.62□□□□□ -1.35
VPS53-219ENST00000576019 ARL13BQ3SXY8 428 aa6.62□□□□□ -1.35
VPS53-219ENST00000576019 RNFT1Q5M7Z0 435 aa6.62□□□□□ -1.35
VPS53-219ENST00000576019 WDR45BQ5MNZ6 344 aa6.62□□□□□ -1.35
VPS53-219ENST00000576019 CCDC30Q5VVM6 783 aa6.62□□□□□ -1.35
VPS53-219ENST00000576019 PRAMEF9Q5VWM5 478 aa6.62□□□□□ -1.35
VPS53-219ENST00000576019 TSHZ3Q63HK5 1081 aa6.62□□□□□ -1.35
VPS53-219ENST00000576019 SEZ6L2Q6UXD5 910 aa6.62□□□□□ -1.35
VPS53-219ENST00000576019 UNQ6494/PRO21346Q6UXR6 183 aa6.62□□□□□ -1.35
VPS53-219ENST00000576019 CYP2R1Q6VVX0 501 aa6.62□□□□□ -1.35
VPS53-219ENST00000576019 SPOCD1Q6ZMY3 1216 aa6.62□□□□□ -1.35
VPS53-219ENST00000576019 C4orf50Q6ZRC1 276 aa6.62□□□□□ -1.35
VPS53-219ENST00000576019 KCTD1Q719H9 257 aa6.62□□□□□ -1.35
VPS53-219ENST00000576019 MIGA2Q7L4E1 593 aa6.62□□□□□ -1.35
VPS53-219ENST00000576019 SESTD1Q86VW0 696 aa6.62□□□□□ -1.35
VPS53-219ENST00000576019 LYSMD2Q8IV50 215 aa6.62□□□□□ -1.35
VPS53-219ENST00000576019 TXLNBQ8N3L3 684 aa6.62□□□□□ -1.35
VPS53-219ENST00000576019 MSL3Q8N5Y2 521 aaKnown RBP6.62□□□□□ -1.35
VPS53-219ENST00000576019 PIWIL2Q8TC59 973 aaKnown RBP6.62□□□□□ -1.35
VPS53-219ENST00000576019 NUP133Q8WUM0 1156 aa6.62□□□□□ -1.35
VPS53-219ENST00000576019 ANKS1AQ92625 1134 aa6.62□□□□□ -1.35
VPS53-219ENST00000576019 MUL1Q969V5 352 aa6.62□□□□□ -1.35
VPS53-219ENST00000576019 ZNF566Q969W8 418 aa6.62□□□□□ -1.35
VPS53-219ENST00000576019 SLC35A4Q96G79 324 aa6.62□□□□□ -1.35
VPS53-219ENST00000576019 MASTLQ96GX5 879 aa6.62□□□□□ -1.35
VPS53-219ENST00000576019 DUSP15Q9H1R2 295 aaPredicted RBP6.62□□□□□ -1.35
VPS53-219ENST00000576019 ALDH8A1Q9H2A2 487 aaPredicted RBP6.62□□□□□ -1.35
VPS53-219ENST00000576019 RC3H2Q9HBD1 1191 aaKnown RBP6.62□□□□□ -1.35
VPS53-219ENST00000576019 SLC6A20Q9NP91 592 aa6.62□□□□□ -1.35
VPS53-219ENST00000576019 SMYD2Q9NRG4 433 aa6.62□□□□□ -1.35
VPS53-219ENST00000576019 TELO2Q9Y4R8 837 aa6.62□□□□□ -1.35
VPS53-219ENST00000576019 PCDHA13Q9Y5I0 950 aa6.62□□□□□ -1.35
VPS53-219ENST00000576019 CFAP20Q9Y6A4 193 aaKnown RBP6.62□□□□□ -1.35
VPS53-219ENST00000576019 MAP1BP46821 2468 aaKnown RBP6.62□□□□□ -1.35
VPS53-219ENST00000576019 POLR2AP24928 1970 aaKnown RBP6.62□□□□□ -1.35
VPS53-219ENST00000576019 PTPRZ1P23471 2315 aaPredicted RBP6.61□□□□□ -1.35
VPS53-219ENST00000576019 A0A1W2PPC4 97 aa6.61□□□□□ -1.35
VPS53-219ENST00000576019 A6NLC8 198 aa6.61□□□□□ -1.35
VPS53-219ENST00000576019 PI4K2BG5E9Z4 385 aa6.61□□□□□ -1.35
VPS53-219ENST00000576019 H3BUI4 141 aa6.61□□□□□ -1.35
VPS53-219ENST00000576019 SLC27A2O14975 620 aa6.61□□□□□ -1.35
VPS53-219ENST00000576019 PLA2G6O60733 806 aa6.61□□□□□ -1.35
VPS53-219ENST00000576019 ALX3O95076 343 aa6.61□□□□□ -1.35
VPS53-219ENST00000576019 PAPLNO95428 1278 aa6.61□□□□□ -1.35
VPS53-219ENST00000576019 FUCA1P04066 466 aa6.61□□□□□ -1.35
VPS53-219ENST00000576019 CELA3BP08861 270 aa6.61□□□□□ -1.35
VPS53-219ENST00000576019 SYN1P17600 705 aa6.61□□□□□ -1.35
VPS53-219ENST00000576019 EEF1GP26641 437 aaKnown RBP6.61□□□□□ -1.35
VPS53-219ENST00000576019 LIFRP42702 1097 aa6.61□□□□□ -1.35
VPS53-219ENST00000576019 GMPSP49915 693 aaPredicted RBP6.61□□□□□ -1.35
VPS53-219ENST00000576019 FMO1Q01740 532 aa6.61□□□□□ -1.35
VPS53-219ENST00000576019 APBA1Q02410 837 aa6.61□□□□□ -1.35
VPS53-219ENST00000576019 SP3Q02447 781 aa6.61□□□□□ -1.35
VPS53-219ENST00000576019 ADRM1Q16186 407 aa6.61□□□□□ -1.35
VPS53-219ENST00000576019 CNGA2Q16280 664 aa6.61□□□□□ -1.35
VPS53-219ENST00000576019 SLC45A4Q5BKX6 768 aa6.61□□□□□ -1.35
VPS53-219ENST00000576019 FAM133BQ5BKY9 247 aaKnown RBP6.61□□□□□ -1.35
VPS53-219ENST00000576019 ITPRIPL1Q6GPH6 555 aa6.61□□□□□ -1.35
VPS53-219ENST00000576019 TIGD7Q6NT04 549 aaPredicted RBP6.61□□□□□ -1.35
VPS53-219ENST00000576019 OLFM4Q6UX06 510 aa6.61□□□□□ -1.35
VPS53-219ENST00000576019 FASTKD5Q7L8L6 764 aaKnown RBP6.61□□□□□ -1.35
VPS53-219ENST00000576019 COLGALT2Q8IYK4 626 aa6.61□□□□□ -1.35
VPS53-219ENST00000576019 SH2D3CQ8N5H7 860 aa6.61□□□□□ -1.35
VPS53-219ENST00000576019 PCYOX1LQ8NBM8 494 aa6.61□□□□□ -1.35
VPS53-219ENST00000576019 WHAMMQ8TF30 809 aa6.61□□□□□ -1.35
VPS53-219ENST00000576019 RAB24Q969Q5 203 aa6.61□□□□□ -1.35
VPS53-219ENST00000576019 MAML3Q96JK9 1138 aa6.61□□□□□ -1.35
VPS53-219ENST00000576019 ZC3H10Q96K80 434 aaKnown RBP6.61□□□□□ -1.35
VPS53-219ENST00000576019 NELL2Q99435 816 aa6.61□□□□□ -1.35
VPS53-219ENST00000576019 CHCHD6Q9BRQ6 235 aa6.61□□□□□ -1.35
VPS53-219ENST00000576019 STK33Q9BYT3 514 aa6.61□□□□□ -1.35
VPS53-219ENST00000576019 WNT8AQ9H1J5 351 aa6.61□□□□□ -1.35
VPS53-219ENST00000576019 PRKRIP1Q9H875 184 aaPredicted RBP6.61□□□□□ -1.35
VPS53-219ENST00000576019 BRD9Q9H8M2 597 aa6.61□□□□□ -1.35
VPS53-219ENST00000576019 C1GALT1Q9NS00 363 aa6.61□□□□□ -1.35
VPS53-219ENST00000576019 CPNE7Q9UBL6 633 aa6.61□□□□□ -1.35
VPS53-219ENST00000576019 X6R8D5 127 aa6.61□□□□□ -1.35
VPS53-219ENST00000576019 LAMB1P07942 1786 aa6.61□□□□□ -1.35
VPS53-219ENST00000576019 ASPMQ8IZT6 3477 aa6.61□□□□□ -1.35
VPS53-219ENST00000576019 B4E171 279 aa6.6□□□□□ -1.35
VPS53-219ENST00000576019 F8W735 103 aaPredicted RBP6.6□□□□□ -1.35
VPS53-219ENST00000576019 KRIT1O00522 736 aa6.6□□□□□ -1.35
VPS53-219ENST00000576019 AREL1O15033 823 aa6.6□□□□□ -1.35
Retrieved 100 of 20,778 RNA–protein pairs in 37.2 ms