RNA–Protein interactions for RNA: ENST00000574867.5

NUP88-210, Transcript of nucleoporin 88, humanhuman

TSL 2

Gene NUP88, Length 2,081 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP88-210ENST00000574867 SGSM1Q2NKQ1 1148 aa18.38■□□□□ 0.53
NUP88-210ENST00000574867 ZNF699Q32M78 642 aa18.38■□□□□ 0.53
NUP88-210ENST00000574867 SUSD3Q96L08 255 aa18.38■□□□□ 0.53
NUP88-210ENST00000574867 XYLT2Q9H1B5 865 aa18.38■□□□□ 0.53
NUP88-210ENST00000574867 RAB20Q9NX57 234 aa18.38■□□□□ 0.53
NUP88-210ENST00000574867 PUF60Q9UHX1 559 aaKnown RBP18.38■□□□□ 0.53
NUP88-210ENST00000574867 KPNA7A9QM74 516 aa18.37■□□□□ 0.53
NUP88-210ENST00000574867 H3BNC9 293 aa18.37■□□□□ 0.53
NUP88-210ENST00000574867 SOX1O00570 391 aaPredicted RBP18.37■□□□□ 0.53
NUP88-210ENST00000574867 ASS1P00966 412 aaKnown RBP18.37■□□□□ 0.53
NUP88-210ENST00000574867 COPB1P53618 953 aaKnown RBP18.37■□□□□ 0.53
NUP88-210ENST00000574867 RNF168Q8IYW5 571 aaPredicted RBP18.37■□□□□ 0.53
NUP88-210ENST00000574867 ARNTL2Q8WYA1 636 aa18.37■□□□□ 0.53
NUP88-210ENST00000574867 M0QZQ0 153 aa18.37■□□□□ 0.53
NUP88-210ENST00000574867 PES1O00541 588 aaKnown RBP18.37■□□□□ 0.53
NUP88-210ENST00000574867 TIGD5Q53EQ6 642 aa18.37■□□□□ 0.53
NUP88-210ENST00000574867 HABP4Q5JVS0 413 aaKnown RBP18.37■□□□□ 0.53
NUP88-210ENST00000574867 HERC2P3Q9BVR0 1158 aa18.37■□□□□ 0.53
NUP88-210ENST00000574867 GDAP2Q9NXN4 497 aa18.37■□□□□ 0.53
NUP88-210ENST00000574867 TSC2P49815 1807 aa18.36■□□□□ 0.53
NUP88-210ENST00000574867 SYN3O14994 580 aa18.36■□□□□ 0.53
NUP88-210ENST00000574867 SPTLC1O15269 473 aa18.36■□□□□ 0.53
NUP88-210ENST00000574867 CLSTN1O94985 981 aa18.36■□□□□ 0.53
NUP88-210ENST00000574867 SOD2P04179 222 aa18.36■□□□□ 0.53
NUP88-210ENST00000574867 ODC1P11926 461 aa18.36■□□□□ 0.53
NUP88-210ENST00000574867 BRCC3P46736 316 aa18.36■□□□□ 0.53
NUP88-210ENST00000574867 GPM6BQ13491 265 aa18.36■□□□□ 0.53
NUP88-210ENST00000574867 FKBP15Q5T1M5 1219 aa18.36■□□□□ 0.53
NUP88-210ENST00000574867 ZNF697Q5TEC3 545 aa18.36■□□□□ 0.53
NUP88-210ENST00000574867 GPR153Q6NV75 609 aa18.36■□□□□ 0.53
NUP88-210ENST00000574867 DSTYKQ6XUX3 929 aa18.36■□□□□ 0.53
NUP88-210ENST00000574867 PDZRN4Q6ZMN7 1036 aaPredicted RBP18.36■□□□□ 0.53
NUP88-210ENST00000574867 APTXQ7Z2E3 356 aaKnown RBP18.36■□□□□ 0.53
NUP88-210ENST00000574867 GPR62Q9BZJ7 368 aa18.36■□□□□ 0.53
NUP88-210ENST00000574867 VPS16Q9H269 839 aa18.36■□□□□ 0.53
NUP88-210ENST00000574867 CERS4Q9HA82 394 aa18.36■□□□□ 0.53
NUP88-210ENST00000574867 GCNT4Q9P109 453 aa18.36■□□□□ 0.53
NUP88-210ENST00000574867 LGALS16A8MUM7 142 aa18.35■□□□□ 0.53
NUP88-210ENST00000574867 P4HA1P13674 534 aa18.35■□□□□ 0.53
NUP88-210ENST00000574867 IGFBP6P24592 240 aaPredicted RBP18.35■□□□□ 0.53
NUP88-210ENST00000574867 NOP14P78316 857 aaKnown RBP18.35■□□□□ 0.53
NUP88-210ENST00000574867 FILIP1LQ4L180 1135 aa18.35■□□□□ 0.53
NUP88-210ENST00000574867 ZNF667Q5HYK9 610 aa18.35■□□□□ 0.53
NUP88-210ENST00000574867 WDR44Q5JSH3 913 aa18.35■□□□□ 0.53
NUP88-210ENST00000574867 SCARA3Q6AZY7 606 aa18.35■□□□□ 0.53
NUP88-210ENST00000574867 GBP6Q6ZN66 633 aa18.35■□□□□ 0.53
NUP88-210ENST00000574867 SEMA4DQ92854 862 aa18.35■□□□□ 0.53
NUP88-210ENST00000574867 FAXDC2Q96IV6 333 aa18.35■□□□□ 0.53
NUP88-210ENST00000574867 SENP8Q96LD8 212 aa18.35■□□□□ 0.53
NUP88-210ENST00000574867 VN1R3Q9BXE9 311 aa18.35■□□□□ 0.53
NUP88-210ENST00000574867 LMAN2LQ9H0V9 348 aa18.35■□□□□ 0.53
NUP88-210ENST00000574867 DSEQ9UL01 958 aa18.35■□□□□ 0.53
NUP88-210ENST00000574867 PCDHB8Q9UN66 801 aa18.35■□□□□ 0.53
NUP88-210ENST00000574867 SERPINC1P01008 464 aa18.35■□□□□ 0.53
NUP88-210ENST00000574867 TNNC1P63316 161 aa18.35■□□□□ 0.53
NUP88-210ENST00000574867 USP41Q3LFD5 358 aa18.35■□□□□ 0.53
NUP88-210ENST00000574867 WDR72Q3MJ13 1102 aa18.35■□□□□ 0.53
NUP88-210ENST00000574867 FAM171A1Q5VUB5 890 aa18.35■□□□□ 0.53
NUP88-210ENST00000574867 GAS2L3Q86XJ1 694 aa18.35■□□□□ 0.53
NUP88-210ENST00000574867 SPPL3Q8TCT6 385 aa18.35■□□□□ 0.53
NUP88-210ENST00000574867 ALG13Q9NP73 1137 aaKnown RBP18.35■□□□□ 0.53
NUP88-210ENST00000574867 SNX9Q9Y5X1 595 aa18.35■□□□□ 0.53
NUP88-210ENST00000574867 CHD9Q3L8U1 2897 aa18.34■□□□□ 0.53
NUP88-210ENST00000574867 HUS1O60921 280 aa18.34■□□□□ 0.53
NUP88-210ENST00000574867 TYMPP19971 482 aa18.34■□□□□ 0.53
NUP88-210ENST00000574867 FGFR3P22607 806 aa18.34■□□□□ 0.53
NUP88-210ENST00000574867 BMS1Q14692 1282 aaKnown RBP18.34■□□□□ 0.53
NUP88-210ENST00000574867 EXOC3L4Q17RC7 722 aa18.34■□□□□ 0.53
NUP88-210ENST00000574867 DPH6Q7L8W6 267 aa18.34■□□□□ 0.53
NUP88-210ENST00000574867 GPR65Q8IYL9 337 aa18.34■□□□□ 0.53
NUP88-210ENST00000574867 VPS52Q8N1B4 723 aa18.34■□□□□ 0.53
NUP88-210ENST00000574867 TOP6BLQ8N6T0 577 aa18.34■□□□□ 0.53
NUP88-210ENST00000574867 APPL2Q8NEU8 664 aa18.34■□□□□ 0.53
NUP88-210ENST00000574867 POF1BQ8WVV4 589 aa18.34■□□□□ 0.53
NUP88-210ENST00000574867 LRCH3Q96II8 777 aa18.34■□□□□ 0.53
NUP88-210ENST00000574867 TTPALQ9BTX7 342 aa18.34■□□□□ 0.53
NUP88-210ENST00000574867 TLR9Q9NR96 1032 aa18.34■□□□□ 0.53
NUP88-210ENST00000574867 VWA8A3KMH1 1905 aa18.34■□□□□ 0.53
NUP88-210ENST00000574867 I3L4J1 428 aa18.34■□□□□ 0.53
NUP88-210ENST00000574867 CYB561D2O14569 222 aa18.34■□□□□ 0.53
NUP88-210ENST00000574867 URODP06132 367 aa18.34■□□□□ 0.53
NUP88-210ENST00000574867 GLUD2P49448 558 aa18.34■□□□□ 0.53
NUP88-210ENST00000574867 PDXDC1Q6P996 788 aa18.34■□□□□ 0.53
NUP88-210ENST00000574867 SPATA18Q8TC71 538 aa18.34■□□□□ 0.53
NUP88-210ENST00000574867 GDPD5Q8WTR4 605 aa18.34■□□□□ 0.53
NUP88-210ENST00000574867 PI4K2AQ9BTU6 479 aa18.34■□□□□ 0.53
NUP88-210ENST00000574867 NIF3L1Q9GZT8 377 aa18.34■□□□□ 0.53
NUP88-210ENST00000574867 ZBP1Q9H171 429 aa18.34■□□□□ 0.53
NUP88-210ENST00000574867 RBSNQ9H1K0 784 aa18.34■□□□□ 0.53
NUP88-210ENST00000574867 TTYH1Q9H313 450 aaPredicted RBP18.34■□□□□ 0.53
NUP88-210ENST00000574867 CHST7Q9NS84 486 aa18.34■□□□□ 0.53
NUP88-210ENST00000574867 A0A1B0GTH6 734 aa18.33■□□□□ 0.52
NUP88-210ENST00000574867 GRM6O15303 877 aa18.33■□□□□ 0.52
NUP88-210ENST00000574867 CYP11A1P05108 521 aa18.33■□□□□ 0.52
NUP88-210ENST00000574867 FANCCQ00597 558 aa18.33■□□□□ 0.52
NUP88-210ENST00000574867 PDE12Q6L8Q7 609 aaKnown RBP18.33■□□□□ 0.52
NUP88-210ENST00000574867 KIAA1841Q6NSI8 718 aa18.33■□□□□ 0.52
NUP88-210ENST00000574867 TMEM86AQ8N2M4 240 aa18.33■□□□□ 0.52
NUP88-210ENST00000574867 EHBP1Q8NDI1 1231 aa18.33■□□□□ 0.52
NUP88-210ENST00000574867 LMO3Q8TAP4 145 aa18.33■□□□□ 0.52
Retrieved 100 of 20,778 RNA–protein pairs in 16.2 ms