RNA–Protein interactions for RNA: ENST00000573936.5

CHD3-216, Transcript of chromodomain helicase DNA binding protein 3, humanhuman

TSL 3

Gene CHD3, Length 749 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD3-216ENST00000573936 ZNF560Q96MR9 790 aa11.91□□□□□ -0.5
CHD3-216ENST00000573936 CGRRF1Q99675 332 aa11.91□□□□□ -0.5
CHD3-216ENST00000573936 MKNK1Q9BUB5 465 aa11.91□□□□□ -0.5
CHD3-216ENST00000573936 IGFLR1Q9H665 355 aa11.91□□□□□ -0.5
CHD3-216ENST00000573936 RXFP1Q9HBX9 757 aa11.91□□□□□ -0.5
CHD3-216ENST00000573936 INTS13Q9NVM9 706 aa11.91□□□□□ -0.5
CHD3-216ENST00000573936 FNIP2Q9P278 1114 aa11.91□□□□□ -0.5
CHD3-216ENST00000573936 PLXNA4Q9HCM2 1894 aa11.91□□□□□ -0.5
CHD3-216ENST00000573936 PPP1R3GB7ZBB8 358 aa11.9□□□□□ -0.5
CHD3-216ENST00000573936 H7C4K7 107 aa11.9□□□□□ -0.5
CHD3-216ENST00000573936 C2CD2LO14523 706 aa11.9□□□□□ -0.5
CHD3-216ENST00000573936 C1RP00736 705 aa11.9□□□□□ -0.5
CHD3-216ENST00000573936 ADH1AP07327 375 aa11.9□□□□□ -0.5
CHD3-216ENST00000573936 DLATP10515 647 aaKnown RBP11.9□□□□□ -0.5
CHD3-216ENST00000573936 EPB41P11171 864 aaKnown RBP11.9□□□□□ -0.5
CHD3-216ENST00000573936 KRT13P13646 458 aa11.9□□□□□ -0.5
CHD3-216ENST00000573936 FGFR3P22607 806 aa11.9□□□□□ -0.5
CHD3-216ENST00000573936 KLRC2P26717 231 aa11.9□□□□□ -0.5
CHD3-216ENST00000573936 BRCC3P46736 316 aa11.9□□□□□ -0.5
CHD3-216ENST00000573936 TAF6P49848 677 aa11.9□□□□□ -0.5
CHD3-216ENST00000573936 GUCY2FP51841 1108 aa11.9□□□□□ -0.5
CHD3-216ENST00000573936 WNT7BP56706 349 aa11.9□□□□□ -0.5
CHD3-216ENST00000573936 LILRA4P59901 499 aa11.9□□□□□ -0.5
CHD3-216ENST00000573936 ZP2Q05996 745 aa11.9□□□□□ -0.5
CHD3-216ENST00000573936 ADAM15Q13444 863 aa11.9□□□□□ -0.5
CHD3-216ENST00000573936 SV2CQ496J9 727 aa11.9□□□□□ -0.5
CHD3-216ENST00000573936 ANKRD40Q6AI12 368 aa11.9□□□□□ -0.5
CHD3-216ENST00000573936 ANKS3Q6ZW76 656 aa11.9□□□□□ -0.5
CHD3-216ENST00000573936 INTS8Q75QN2 995 aaKnown RBP11.9□□□□□ -0.5
CHD3-216ENST00000573936 FAM186BQ8IYM0 893 aa11.9□□□□□ -0.5
CHD3-216ENST00000573936 LRRC52Q8N7C0 313 aa11.9□□□□□ -0.5
CHD3-216ENST00000573936 C1orf127Q8N9H9 656 aa11.9□□□□□ -0.5
CHD3-216ENST00000573936 MLKLQ8NB16 471 aa11.9□□□□□ -0.5
CHD3-216ENST00000573936 C3orf58Q8NDZ4 430 aa11.9□□□□□ -0.5
CHD3-216ENST00000573936 PARD3BQ8TEW8 1205 aa11.9□□□□□ -0.5
CHD3-216ENST00000573936 AUTS2Q8WXX7 1259 aa11.9□□□□□ -0.5
CHD3-216ENST00000573936 PIK3R5Q8WYR1 880 aa11.9□□□□□ -0.5
CHD3-216ENST00000573936 CCDC127Q96BQ5 260 aa11.9□□□□□ -0.5
CHD3-216ENST00000573936 KLHL5Q96PQ7 755 aa11.9□□□□□ -0.5
CHD3-216ENST00000573936 DPP7Q9UHL4 492 aa11.9□□□□□ -0.5
CHD3-216ENST00000573936 DACH1Q9UI36 760 aa11.9□□□□□ -0.5
CHD3-216ENST00000573936 PCDHB8Q9UN66 801 aa11.9□□□□□ -0.5
CHD3-216ENST00000573936 AGAP1Q9UPQ3 857 aa11.9□□□□□ -0.5
CHD3-216ENST00000573936 PCDHGC5Q9Y5F6 944 aa11.9□□□□□ -0.5
CHD3-216ENST00000573936 M0QZQ0 153 aa11.89□□□□□ -0.51
CHD3-216ENST00000573936 IKBKBO14920 756 aa11.89□□□□□ -0.51
CHD3-216ENST00000573936 PER2O15055 1255 aa11.89□□□□□ -0.51
CHD3-216ENST00000573936 SLC16A3O15427 465 aaKnown RBP11.89□□□□□ -0.51
CHD3-216ENST00000573936 CLASP2O75122 1294 aaKnown RBP11.89□□□□□ -0.51
CHD3-216ENST00000573936 TBX10O75333 385 aa11.89□□□□□ -0.51
CHD3-216ENST00000573936 FGFR1OPO95684 399 aaKnown RBP11.89□□□□□ -0.51
CHD3-216ENST00000573936 ITGB3P05106 788 aa11.89□□□□□ -0.51
CHD3-216ENST00000573936 BMP6P22004 513 aa11.89□□□□□ -0.51
CHD3-216ENST00000573936 GTF2F1P35269 517 aaKnown RBP eCLIP11.89□□□□□ -0.51
CHD3-216ENST00000573936 LTBRP36941 435 aa11.89□□□□□ -0.51
CHD3-216ENST00000573936 AARSP49588 968 aaKnown RBP eCLIP11.89□□□□□ -0.511e-6■■■■■ 36.1
CHD3-216ENST00000573936 CASP4P49662 377 aa11.89□□□□□ -0.51
CHD3-216ENST00000573936 VAMP7P51809 220 aa11.89□□□□□ -0.51
CHD3-216ENST00000573936 DLX2Q07687 328 aaPredicted RBP11.89□□□□□ -0.51
CHD3-216ENST00000573936 MYO1EQ12965 1108 aa11.89□□□□□ -0.51
CHD3-216ENST00000573936 PAK1Q13153 545 aa11.89□□□□□ -0.51
CHD3-216ENST00000573936 PSMD5Q16401 504 aa11.89□□□□□ -0.51
CHD3-216ENST00000573936 CTC1Q2NKJ3 1217 aa11.89□□□□□ -0.51
CHD3-216ENST00000573936 KLHL10Q6JEL2 608 aa11.89□□□□□ -0.51
CHD3-216ENST00000573936 ELMSAN1Q6PJG2 1045 aa11.89□□□□□ -0.51
CHD3-216ENST00000573936 HFE2Q6ZVN8 426 aa11.89□□□□□ -0.51
CHD3-216ENST00000573936 TRAPPC11Q7Z392 1133 aa11.89□□□□□ -0.51
CHD3-216ENST00000573936 ZC3H3Q8IXZ2 948 aaKnown RBP11.89□□□□□ -0.51
CHD3-216ENST00000573936 LNX1Q8TBB1 728 aaPredicted RBP11.89□□□□□ -0.51
CHD3-216ENST00000573936 NELFBQ8WX92 580 aa11.89□□□□□ -0.51
CHD3-216ENST00000573936 CASP10Q92851 521 aa11.89□□□□□ -0.51
CHD3-216ENST00000573936 CEP63Q96MT8 703 aa11.89□□□□□ -0.51
CHD3-216ENST00000573936 OXCT2Q9BYC2 517 aaPredicted RBP11.89□□□□□ -0.51
CHD3-216ENST00000573936 MTMR12Q9C0I1 747 aa11.89□□□□□ -0.51
CHD3-216ENST00000573936 DSEQ9UL01 958 aa11.89□□□□□ -0.51
CHD3-216ENST00000573936 BACE2Q9Y5Z0 518 aa11.89□□□□□ -0.51
CHD3-216ENST00000573936 C19orf67A6NJJ6 358 aa11.88□□□□□ -0.51
CHD3-216ENST00000573936 KPNA7A9QM74 516 aa11.88□□□□□ -0.51
CHD3-216ENST00000573936 LINC01565O15544 149 aa11.88□□□□□ -0.51
CHD3-216ENST00000573936 STX10O60499 249 aa11.88□□□□□ -0.51
CHD3-216ENST00000573936 PHACTR2O75167 634 aa11.88□□□□□ -0.51
CHD3-216ENST00000573936 AKAP3O75969 853 aa11.88□□□□□ -0.51
CHD3-216ENST00000573936 KRT19P08727 400 aa11.88□□□□□ -0.51
CHD3-216ENST00000573936 CNPP09543 421 aaKnown RBP11.88□□□□□ -0.51
CHD3-216ENST00000573936 ODC1P11926 461 aa11.88□□□□□ -0.51
CHD3-216ENST00000573936 CD44P16070 742 aaKnown RBP11.88□□□□□ -0.51
CHD3-216ENST00000573936 TYMPP19971 482 aa11.88□□□□□ -0.51
CHD3-216ENST00000573936 TKTP29401 623 aaKnown RBP11.88□□□□□ -0.51
CHD3-216ENST00000573936 POLR2BP30876 1174 aaKnown RBP11.88□□□□□ -0.51
CHD3-216ENST00000573936 NDUFV1P49821 464 aa11.88□□□□□ -0.51
CHD3-216ENST00000573936 NLRP12P59046 1061 aa11.88□□□□□ -0.51
CHD3-216ENST00000573936 CLDN10P78369 228 aa11.88□□□□□ -0.51
CHD3-216ENST00000573936 TRPC3Q13507 836 aa11.88□□□□□ -0.51
CHD3-216ENST00000573936 CT47A1Q5JQC4 288 aaPredicted RBP11.88□□□□□ -0.51
CHD3-216ENST00000573936 RTP2Q5QGT7 225 aa11.88□□□□□ -0.51
CHD3-216ENST00000573936 CCDC183Q5T5S1 534 aa11.88□□□□□ -0.51
CHD3-216ENST00000573936 LMBRD2Q68DH5 695 aaPredicted RBP11.88□□□□□ -0.51
CHD3-216ENST00000573936 TMEM184AQ6ZMB5 413 aa11.88□□□□□ -0.51
CHD3-216ENST00000573936 FILIP1Q7Z7B0 1213 aa11.88□□□□□ -0.51
CHD3-216ENST00000573936 METTL23Q86XA0 190 aa11.88□□□□□ -0.51
Retrieved 100 of 20,778 RNA–protein pairs in 28 ms