RNA–Protein interactions for RNA: ENST00000573028.5

VPS53-215, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 2

Gene VPS53, Length 3,204 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-215ENST00000573028 ZNF394Q53GI3 561 aa18.11■□□□□ 0.49
VPS53-215ENST00000573028 ANKMY2Q8IV38 441 aa18.11■□□□□ 0.49
VPS53-215ENST00000573028 ANKFY1Q9P2R3 1169 aa18.11■□□□□ 0.49
VPS53-215ENST00000573028 UMODL1Q5DID0 1318 aa18.11■□□□□ 0.49
VPS53-215ENST00000573028 GCNT1Q02742 428 aa18.11■□□□□ 0.49
VPS53-215ENST00000573028 SETDB1Q15047 1291 aa18.11■□□□□ 0.49
VPS53-215ENST00000573028 MTFR1Q15390 333 aa18.11■□□□□ 0.49
VPS53-215ENST00000573028 TLDC1Q6P9B6 456 aa18.11■□□□□ 0.49
VPS53-215ENST00000573028 CRELD2Q6UXH1 353 aaPredicted RBP18.11■□□□□ 0.49
VPS53-215ENST00000573028 FAM81BQ96LP2 452 aa18.11■□□□□ 0.49
VPS53-215ENST00000573028 MYLK2Q9H1R3 596 aa18.11■□□□□ 0.49
VPS53-215ENST00000573028 C10orf88Q9H8K7 445 aa18.11■□□□□ 0.49
VPS53-215ENST00000573028 PMM2O15305 246 aa18.11■□□□□ 0.49
VPS53-215ENST00000573028 ZNF862O60290 1169 aa18.11■□□□□ 0.49
VPS53-215ENST00000573028 PAX7P23759 505 aa18.11■□□□□ 0.49
VPS53-215ENST00000573028 CENPCQ03188 943 aa18.11■□□□□ 0.49
VPS53-215ENST00000573028 ZBED8Q8IZ13 594 aa18.11■□□□□ 0.49
VPS53-215ENST00000573028 TRABDQ9H4I3 376 aa18.11■□□□□ 0.49
VPS53-215ENST00000573028 AVENQ9NQS1 362 aaPredicted RBP18.11■□□□□ 0.49
VPS53-215ENST00000573028 HAO1Q9UJM8 370 aa18.11■□□□□ 0.49
VPS53-215ENST00000573028 SYNPO2Q9UMS6 1093 aa18.11■□□□□ 0.49
VPS53-215ENST00000573028 KRT1P04264 644 aa18.1■□□□□ 0.49
VPS53-215ENST00000573028 NLRP11P59045 1033 aaKnown RBP18.1■□□□□ 0.49
VPS53-215ENST00000573028 DYNLT1P63172 113 aa18.1■□□□□ 0.49
VPS53-215ENST00000573028 NOP14P78316 857 aaKnown RBP18.1■□□□□ 0.49
VPS53-215ENST00000573028 KLF1Q13351 362 aaPredicted RBP18.1■□□□□ 0.49
VPS53-215ENST00000573028 MAMLD1Q13495 774 aa18.1■□□□□ 0.49
VPS53-215ENST00000573028 MTERF2Q49AM1 385 aa18.1■□□□□ 0.49
VPS53-215ENST00000573028 ZBTB45Q96K62 511 aaPredicted RBP18.1■□□□□ 0.49
VPS53-215ENST00000573028 RBBP6Q7Z6E9 1792 aaKnown RBP18.1■□□□□ 0.49
VPS53-215ENST00000573028 LYPLA2O95372 231 aa18.1■□□□□ 0.49
VPS53-215ENST00000573028 POTEJP0CG39 1038 aa18.1■□□□□ 0.49
VPS53-215ENST00000573028 PECAM1P16284 738 aaPredicted RBP18.1■□□□□ 0.49
VPS53-215ENST00000573028 CETN2P41208 172 aa18.1■□□□□ 0.49
VPS53-215ENST00000573028 JAK3P52333 1124 aa18.1■□□□□ 0.49
VPS53-215ENST00000573028 SNRPFP62306 86 aaKnown RBP18.1■□□□□ 0.49
VPS53-215ENST00000573028 NFX1Q12986 1120 aaKnown RBP18.1■□□□□ 0.49
VPS53-215ENST00000573028 MON1BQ7L1V2 547 aa18.1■□□□□ 0.49
VPS53-215ENST00000573028 PLCD4Q9BRC7 762 aa18.1■□□□□ 0.49
VPS53-215ENST00000573028 PDCD2LQ9BRP1 358 aa18.1■□□□□ 0.49
VPS53-215ENST00000573028 ARHGEF3Q9NR81 526 aa18.1■□□□□ 0.49
VPS53-215ENST00000573028 PRKAG3Q9UGI9 489 aa18.1■□□□□ 0.49
VPS53-215ENST00000573028 PHTF1Q9UMS5 762 aa18.1■□□□□ 0.49
VPS53-215ENST00000573028 THSD7AQ9UPZ6 1657 aa18.1■□□□□ 0.49
VPS53-215ENST00000573028 TDRD10Q5VZ19 366 aaKnown RBP18.1■□□□□ 0.49
VPS53-215ENST00000573028 MFSD7Q6UXD7 560 aa18.1■□□□□ 0.49
VPS53-215ENST00000573028 KRT27Q7Z3Y8 459 aa18.1■□□□□ 0.49
VPS53-215ENST00000573028 ANKLE1Q8NAG6 615 aa18.1■□□□□ 0.49
VPS53-215ENST00000573028 TRIM11Q96F44 468 aa18.1■□□□□ 0.49
VPS53-215ENST00000573028 CFAP57Q96MR6 1250 aa18.1■□□□□ 0.49
VPS53-215ENST00000573028 EBF2Q9HAK2 575 aa18.1■□□□□ 0.49
VPS53-215ENST00000573028 PCDHA10Q9Y5I2 948 aa18.1■□□□□ 0.49
VPS53-215ENST00000573028 PTPRJQ12913 1337 aa18.09■□□□□ 0.49
VPS53-215ENST00000573028 ASNSP08243 561 aa18.09■□□□□ 0.49
VPS53-215ENST00000573028 FAM182AQ5T1J6 154 aa18.09■□□□□ 0.49
VPS53-215ENST00000573028 BBOF1Q8ND07 529 aa18.09■□□□□ 0.49
VPS53-215ENST00000573028 CCHCR1Q8TD31 782 aa18.09■□□□□ 0.49
VPS53-215ENST00000573028 L3MBTL3Q96JM7 780 aaPredicted RBP18.09■□□□□ 0.49
VPS53-215ENST00000573028 QTRT2Q9H974 415 aaKnown RBP18.09■□□□□ 0.49
VPS53-215ENST00000573028 KIAA1586Q9HCI6 787 aa18.09■□□□□ 0.49
VPS53-215ENST00000573028 ANKEF1Q9NU02 776 aa18.09■□□□□ 0.49
VPS53-215ENST00000573028 DONSONQ9NYP3 566 aa18.09■□□□□ 0.49
VPS53-215ENST00000573028 TRPC5Q9UL62 973 aaPredicted RBP18.09■□□□□ 0.49
VPS53-215ENST00000573028 MYBL1P10243 752 aa18.09■□□□□ 0.49
VPS53-215ENST00000573028 RPA3P35244 121 aaPredicted RBP18.09■□□□□ 0.49
VPS53-215ENST00000573028 KRT76Q01546 638 aa18.09■□□□□ 0.49
VPS53-215ENST00000573028 MKRN3Q13064 507 aaKnown RBP18.09■□□□□ 0.49
VPS53-215ENST00000573028 ZBTB41Q5SVQ8 909 aa18.09■□□□□ 0.49
VPS53-215ENST00000573028 SCARA3Q6AZY7 606 aa18.09■□□□□ 0.49
VPS53-215ENST00000573028 ENOSF1Q7L5Y1 443 aa18.09■□□□□ 0.49
VPS53-215ENST00000573028 TMEM143Q96AN5 459 aa18.09■□□□□ 0.49
VPS53-215ENST00000573028 SMC6Q96SB8 1091 aa18.09■□□□□ 0.49
VPS53-215ENST00000573028 FAM167BQ9BTA0 163 aa18.09■□□□□ 0.49
VPS53-215ENST00000573028 POLR3FQ9H1D9 316 aaPredicted RBP18.09■□□□□ 0.49
VPS53-215ENST00000573028 MRPL47Q9HD33 250 aaKnown RBP18.09■□□□□ 0.49
VPS53-215ENST00000573028 SAE1Q9UBE0 346 aaPredicted RBP18.09■□□□□ 0.49
VPS53-215ENST00000573028 LGALS13Q9UHV8 139 aa18.09■□□□□ 0.49
VPS53-215ENST00000573028 CNTNAP1P78357 1384 aa18.08■□□□□ 0.49
VPS53-215ENST00000573028 BPIFB4P59827 614 aa18.08■□□□□ 0.49
VPS53-215ENST00000573028 BAATQ14032 418 aaPredicted RBP18.08■□□□□ 0.49
VPS53-215ENST00000573028 HHATQ5VTY9 493 aa18.08■□□□□ 0.49
VPS53-215ENST00000573028 LRRC8CQ8TDW0 803 aa18.08■□□□□ 0.49
VPS53-215ENST00000573028 MAML1Q92585 1016 aa18.08■□□□□ 0.49
VPS53-215ENST00000573028 FBXL18Q96ME1 805 aa18.08■□□□□ 0.49
VPS53-215ENST00000573028 LRRC37BQ96QE4 947 aa18.08■□□□□ 0.49
VPS53-215ENST00000573028 LBHD1Q9BQE6 289 aaPredicted RBP18.08■□□□□ 0.49
VPS53-215ENST00000573028 MOV10L1Q9BXT6 1211 aaKnown RBP18.08■□□□□ 0.49
VPS53-215ENST00000573028 A0A1W2PPM1 405 aa18.08■□□□□ 0.48
VPS53-215ENST00000573028 GOLGA8RI6L899 631 aa18.08■□□□□ 0.48
VPS53-215ENST00000573028 SGK1O00141 431 aa18.08■□□□□ 0.48
VPS53-215ENST00000573028 NEBLO76041 1014 aa18.08■□□□□ 0.48
VPS53-215ENST00000573028 CCND1P24385 295 aa18.08■□□□□ 0.48
VPS53-215ENST00000573028 DCUN1D2Q6PH85 259 aa18.08■□□□□ 0.48
VPS53-215ENST00000573028 NIPA1Q7RTP0 329 aa18.08■□□□□ 0.48
VPS53-215ENST00000573028 TRABD2AQ86V40 505 aa18.08■□□□□ 0.48
VPS53-215ENST00000573028 LARGE2Q8N3Y3 721 aa18.08■□□□□ 0.48
VPS53-215ENST00000573028 RBBP8NLQ8NC74 664 aaPredicted RBP18.08■□□□□ 0.48
VPS53-215ENST00000573028 KLF6Q99612 283 aaPredicted RBP18.08■□□□□ 0.48
VPS53-215ENST00000573028 TMEM121Q9BTD3 319 aa18.08■□□□□ 0.48
VPS53-215ENST00000573028 TIPINQ9BVW5 301 aa18.08■□□□□ 0.48
Retrieved 100 of 20,778 RNA–protein pairs in 28 ms