RNA–Protein interactions for RNA: ENST00000572334.6

VPS53-213, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 5

Gene VPS53, Length 561 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-213ENST00000572334 ZNF131P52739 623 aa7.33□□□□□ -1.24
VPS53-213ENST00000572334 ARPP19P56211 112 aa7.33□□□□□ -1.24
VPS53-213ENST00000572334 ADCY1Q08828 1119 aa7.33□□□□□ -1.24
VPS53-213ENST00000572334 GRM2Q14416 872 aa7.33□□□□□ -1.24
VPS53-213ENST00000572334 ENOX2Q16206 610 aaKnown RBP7.33□□□□□ -1.24
VPS53-213ENST00000572334 ZNF528Q3MIS6 628 aa7.33□□□□□ -1.24
VPS53-213ENST00000572334 CTXN3Q4LDR2 81 aa7.33□□□□□ -1.24
VPS53-213ENST00000572334 RILPL1Q5EBL4 403 aa7.33□□□□□ -1.24
VPS53-213ENST00000572334 TPGS2Q68CL5 300 aa7.33□□□□□ -1.24
VPS53-213ENST00000572334 VITQ6UXI7 678 aa7.33□□□□□ -1.24
VPS53-213ENST00000572334 RNF19BQ6ZMZ0 732 aa7.33□□□□□ -1.24
VPS53-213ENST00000572334 TPRG1Q6ZUI0 275 aa7.33□□□□□ -1.24
VPS53-213ENST00000572334 APBB1IPQ7Z5R6 666 aaPredicted RBP7.33□□□□□ -1.24
VPS53-213ENST00000572334 TMC8Q8IU68 726 aa7.33□□□□□ -1.24
VPS53-213ENST00000572334 MAP4K3Q8IVH8 894 aa7.33□□□□□ -1.24
VPS53-213ENST00000572334 DCLK2Q8N568 766 aa7.33□□□□□ -1.24
VPS53-213ENST00000572334 KCTD17Q8N5Z5 321 aa7.33□□□□□ -1.24
VPS53-213ENST00000572334 ZBTB44Q8NCP5 570 aa7.33□□□□□ -1.24
VPS53-213ENST00000572334 SHKBP1Q8TBC3 707 aa7.33□□□□□ -1.24
VPS53-213ENST00000572334 RMDN1Q96DB5 314 aa7.33□□□□□ -1.24
VPS53-213ENST00000572334 SHDQ96IW2 340 aa7.33□□□□□ -1.24
VPS53-213ENST00000572334 ASB16Q96NS5 453 aa7.33□□□□□ -1.24
VPS53-213ENST00000572334 TMEM209Q96SK2 561 aa7.33□□□□□ -1.24
VPS53-213ENST00000572334 CORO1BQ9BR76 489 aa7.33□□□□□ -1.24
VPS53-213ENST00000572334 TCHPQ9BT92 498 aa7.33□□□□□ -1.24
VPS53-213ENST00000572334 MKNK1Q9BUB5 465 aa7.33□□□□□ -1.24
VPS53-213ENST00000572334 IKZF4Q9H2S9 585 aa7.33□□□□□ -1.24
VPS53-213ENST00000572334 SEMA4AQ9H3S1 761 aa7.33□□□□□ -1.24
VPS53-213ENST00000572334 AFF4Q9UHB7 1163 aaKnown RBP7.33□□□□□ -1.24
VPS53-213ENST00000572334 PCDHB8Q9UN66 801 aa7.33□□□□□ -1.24
VPS53-213ENST00000572334 TIMM13Q9Y5L4 95 aaPredicted RBP7.33□□□□□ -1.24
VPS53-213ENST00000572334 TISP43B9A030 160 aa7.32□□□□□ -1.24
VPS53-213ENST00000572334 H7C4K7 107 aa7.32□□□□□ -1.24
VPS53-213ENST00000572334 PRRG1O14668 218 aa7.32□□□□□ -1.24
VPS53-213ENST00000572334 CLDN3O15551 220 aa7.32□□□□□ -1.24
VPS53-213ENST00000572334 LRG1P02750 347 aa7.32□□□□□ -1.24
VPS53-213ENST00000572334 CYP3A5P20815 502 aa7.32□□□□□ -1.24
VPS53-213ENST00000572334 RFX1P22670 979 aa7.32□□□□□ -1.24
VPS53-213ENST00000572334 TGM1P22735 817 aa7.32□□□□□ -1.24
VPS53-213ENST00000572334 MCM4P33991 863 aa7.32□□□□□ -1.24
VPS53-213ENST00000572334 VIPR2P41587 438 aa7.32□□□□□ -1.24
VPS53-213ENST00000572334 RPS9P46781 194 aaKnown RBP7.32□□□□□ -1.24
VPS53-213ENST00000572334 ID4P47928 161 aa7.32□□□□□ -1.24
VPS53-213ENST00000572334 PFKPQ01813 784 aa7.32□□□□□ -1.24
VPS53-213ENST00000572334 TWF1Q12792 350 aa7.32□□□□□ -1.24
VPS53-213ENST00000572334 GAS6Q14393 721 aa7.32□□□□□ -1.24
VPS53-213ENST00000572334 UBXN2BQ14CS0 331 aa7.32□□□□□ -1.24
VPS53-213ENST00000572334 RABEP1Q15276 862 aa7.32□□□□□ -1.24
VPS53-213ENST00000572334 ZRSR1Q15695 479 aaKnown RBP7.32□□□□□ -1.24
VPS53-213ENST00000572334 ARL6IP4Q66PJ3 421 aaKnown RBP7.32□□□□□ -1.24
VPS53-213ENST00000572334 MCTP1Q6DN14 999 aa7.32□□□□□ -1.24
VPS53-213ENST00000572334 ZNF280DQ6N043 979 aa7.32□□□□□ -1.24
VPS53-213ENST00000572334 TSSK4Q6SA08 328 aa7.32□□□□□ -1.24
VPS53-213ENST00000572334 HAUS6Q7Z4H7 955 aa7.32□□□□□ -1.24
VPS53-213ENST00000572334 TTC9BQ8N6N2 239 aa7.32□□□□□ -1.24
VPS53-213ENST00000572334 DNASE1L2Q92874 299 aa7.32□□□□□ -1.24
VPS53-213ENST00000572334 LRRC3BQ96PB8 259 aa7.32□□□□□ -1.24
VPS53-213ENST00000572334 REEP2Q9BRK0 252 aa7.32□□□□□ -1.24
VPS53-213ENST00000572334 PLEKHA5Q9HAU0 1116 aa7.32□□□□□ -1.24
VPS53-213ENST00000572334 TRPV4Q9HBA0 871 aa7.32□□□□□ -1.24
VPS53-213ENST00000572334 ZNF334Q9HCZ1 680 aaPredicted RBP7.32□□□□□ -1.24
VPS53-213ENST00000572334 PRMT8Q9NR22 394 aaPredicted RBP7.32□□□□□ -1.24
VPS53-213ENST00000572334 KCND2Q9NZV8 630 aa7.32□□□□□ -1.24
VPS53-213ENST00000572334 FBXO4Q9UKT5 387 aa7.32□□□□□ -1.24
VPS53-213ENST00000572334 TBX20Q9UMR3 447 aa7.32□□□□□ -1.24
VPS53-213ENST00000572334 YIPF1Q9Y548 306 aa7.32□□□□□ -1.24
VPS53-213ENST00000572334 NUB1Q9Y5A7 615 aa7.32□□□□□ -1.24
VPS53-213ENST00000572334 MYOFQ9NZM1 2061 aa7.32□□□□□ -1.24
VPS53-213ENST00000572334 HELZP42694 1942 aaKnown RBP7.31□□□□□ -1.24
VPS53-213ENST00000572334 A0A0B4J269 797 aa7.31□□□□□ -1.24
VPS53-213ENST00000572334 ANO9A1A5B4 782 aa7.31□□□□□ -1.24
VPS53-213ENST00000572334 ANKRD63C9JTQ0 380 aa7.31□□□□□ -1.24
VPS53-213ENST00000572334 PIRO00625 290 aa7.31□□□□□ -1.24
VPS53-213ENST00000572334 HSP90AA1P07900 732 aaKnown RBP7.31□□□□□ -1.24
VPS53-213ENST00000572334 NFICP08651 508 aa7.31□□□□□ -1.24
VPS53-213ENST00000572334 CLTAP09496 248 aa7.31□□□□□ -1.24
VPS53-213ENST00000572334 HOXC13P31276 330 aa7.31□□□□□ -1.24
VPS53-213ENST00000572334 ELF1P32519 619 aa7.31□□□□□ -1.24
VPS53-213ENST00000572334 SMTNP53814 917 aa7.31□□□□□ -1.24
VPS53-213ENST00000572334 LILRA4P59901 499 aa7.31□□□□□ -1.24
VPS53-213ENST00000572334 GTF2BQ00403 316 aa7.31□□□□□ -1.24
VPS53-213ENST00000572334 CACNA1BQ00975 2339 aa7.31□□□□□ -1.24
VPS53-213ENST00000572334 YWHAHQ04917 246 aaPredicted RBP7.31□□□□□ -1.24
VPS53-213ENST00000572334 STRN3Q13033 797 aa7.31□□□□□ -1.24
VPS53-213ENST00000572334 DUSP4Q13115 394 aa7.31□□□□□ -1.24
VPS53-213ENST00000572334 MTAPQ13126 283 aa7.31□□□□□ -1.24
VPS53-213ENST00000572334 GPR17Q13304 367 aa7.31□□□□□ -1.24
VPS53-213ENST00000572334 MCM6Q14566 821 aa7.31□□□□□ -1.24
VPS53-213ENST00000572334 TEAD2Q15562 447 aa7.31□□□□□ -1.24
VPS53-213ENST00000572334 STXBP5Q5T5C0 1151 aa7.31□□□□□ -1.24
VPS53-213ENST00000572334 SPATA1Q5VX52 437 aa7.31□□□□□ -1.24
VPS53-213ENST00000572334 SCARA3Q6AZY7 606 aa7.31□□□□□ -1.24
VPS53-213ENST00000572334 CENPPQ6IPU0 288 aa7.31□□□□□ -1.24
VPS53-213ENST00000572334 CRELD2Q6UXH1 353 aaPredicted RBP7.31□□□□□ -1.24
VPS53-213ENST00000572334 USP49Q70CQ1 688 aa7.31□□□□□ -1.24
VPS53-213ENST00000572334 GAREM2Q75VX8 874 aa7.31□□□□□ -1.24
VPS53-213ENST00000572334 PDZD4Q76G19 769 aaPredicted RBP7.31□□□□□ -1.24
VPS53-213ENST00000572334 ERMP1Q7Z2K6 904 aa7.31□□□□□ -1.24
VPS53-213ENST00000572334 KIAA2013Q8IYS2 634 aa7.31□□□□□ -1.24
VPS53-213ENST00000572334 APPL2Q8NEU8 664 aa7.31□□□□□ -1.24
Retrieved 100 of 20,778 RNA–protein pairs in 24.5 ms