RNA–Protein interactions for RNA: ENST00000572270.1

CCDC40-208, Transcript of coiled-coil domain containing 40, humanhuman

TSL 4

Gene CCDC40, Length 460 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40-208ENST00000572270 CREB3L3Q68CJ9 461 aa14.37□□□□□ -0.11
CCDC40-208ENST00000572270 PPP4R3CPQ6ZMV5 832 aa14.37□□□□□ -0.11
CCDC40-208ENST00000572270 SYT13Q7L8C5 426 aa14.37□□□□□ -0.11
CCDC40-208ENST00000572270 RAB44Q7Z6P3 723 aaPredicted RBP14.37□□□□□ -0.11
CCDC40-208ENST00000572270 EXOC4Q96A65 974 aa14.37□□□□□ -0.11
CCDC40-208ENST00000572270 ACDQ96AP0 544 aa14.37□□□□□ -0.11
CCDC40-208ENST00000572270 CCDC43Q96MW1 224 aaKnown RBP14.37□□□□□ -0.11
CCDC40-208ENST00000572270 CXCL16Q9H2A7 254 aa14.37□□□□□ -0.11
CCDC40-208ENST00000572270 DDX25Q9UHL0 483 aaKnown RBP14.37□□□□□ -0.11
CCDC40-208ENST00000572270 FBXL5Q9UKA1 691 aa14.37□□□□□ -0.11
CCDC40-208ENST00000572270 INVSQ9Y283 1065 aa14.37□□□□□ -0.11
CCDC40-208ENST00000572270 GDAQ9Y2T3 454 aa14.37□□□□□ -0.11
CCDC40-208ENST00000572270 LRRIQ4A6NIV6 560 aa14.36□□□□□ -0.11
CCDC40-208ENST00000572270 UPK3BL1B0FP48 263 aa14.36□□□□□ -0.11
CCDC40-208ENST00000572270 UPK3BL2E5RIL1 263 aa14.36□□□□□ -0.11
CCDC40-208ENST00000572270 TRDMT1O14717 391 aaKnown RBP14.36□□□□□ -0.11
CCDC40-208ENST00000572270 PRPF3O43395 683 aaKnown RBP14.36□□□□□ -0.11
CCDC40-208ENST00000572270 EGFP01133 1207 aa14.36□□□□□ -0.11
CCDC40-208ENST00000572270 ENGP17813 658 aa14.36□□□□□ -0.11
CCDC40-208ENST00000572270 DRD1P21728 446 aa14.36□□□□□ -0.11
CCDC40-208ENST00000572270 GLRA2P23416 452 aa14.36□□□□□ -0.11
CCDC40-208ENST00000572270 MCM2P49736 904 aa14.36□□□□□ -0.11
CCDC40-208ENST00000572270 DMC1Q14565 340 aa14.36□□□□□ -0.11
CCDC40-208ENST00000572270 FBXO43Q4G163 708 aa14.36□□□□□ -0.11
CCDC40-208ENST00000572270 STXBP5Q5T5C0 1151 aa14.36□□□□□ -0.11
CCDC40-208ENST00000572270 ZNF280DQ6N043 979 aa14.36□□□□□ -0.11
CCDC40-208ENST00000572270 MOXD1Q6UVY6 613 aa14.36□□□□□ -0.11
CCDC40-208ENST00000572270 PIP4P1Q86T03 277 aa14.36□□□□□ -0.11
CCDC40-208ENST00000572270 NOSTRINQ8IVI9 506 aa14.36□□□□□ -0.11
CCDC40-208ENST00000572270 ZBTB8OSQ8IWT0 167 aa14.36□□□□□ -0.11
CCDC40-208ENST00000572270 C3orf58Q8NDZ4 430 aa14.36□□□□□ -0.11
CCDC40-208ENST00000572270 RPLP0P6Q8NHW5 317 aa14.36□□□□□ -0.11
CCDC40-208ENST00000572270 LRRC3BQ96PB8 259 aa14.36□□□□□ -0.11
CCDC40-208ENST00000572270 PDZD7Q9H5P4 517 aa14.36□□□□□ -0.11
CCDC40-208ENST00000572270 ZSWIM4Q9H7M6 989 aa14.36□□□□□ -0.11
CCDC40-208ENST00000572270 GOLGA2P5Q9HBQ8 144 aa14.36□□□□□ -0.11
CCDC40-208ENST00000572270 VAV3Q9UKW4 847 aa14.36□□□□□ -0.11
CCDC40-208ENST00000572270 YIPF1Q9Y548 306 aa14.36□□□□□ -0.11
CCDC40-208ENST00000572270 CELSR3Q9NYQ7 3312 aa14.35□□□□□ -0.11
CCDC40-208ENST00000572270 ABCA7Q8IZY2 2146 aa14.35□□□□□ -0.11
CCDC40-208ENST00000572270 DGAT1O75907 488 aa14.35□□□□□ -0.11
CCDC40-208ENST00000572270 FGF19O95750 216 aa14.35□□□□□ -0.11
CCDC40-208ENST00000572270 ARL2P36404 184 aa14.35□□□□□ -0.11
CCDC40-208ENST00000572270 EPHB3P54753 998 aa14.35□□□□□ -0.11
CCDC40-208ENST00000572270 NLRP5P59047 1200 aa14.35□□□□□ -0.11
CCDC40-208ENST00000572270 CACNB1Q02641 598 aaPredicted RBP14.35□□□□□ -0.11
CCDC40-208ENST00000572270 SEMA3BQ13214 749 aa14.35□□□□□ -0.11
CCDC40-208ENST00000572270 HNRNPDQ14103 355 aaKnown RBP14.35□□□□□ -0.11
CCDC40-208ENST00000572270 EPHA7Q15375 998 aa14.35□□□□□ -0.11
CCDC40-208ENST00000572270 GPR158Q5T848 1215 aa14.35□□□□□ -0.11
CCDC40-208ENST00000572270 CD300LGQ6UXG3 332 aa14.35□□□□□ -0.11
CCDC40-208ENST00000572270 TMC8Q8IU68 726 aa14.35□□□□□ -0.11
CCDC40-208ENST00000572270 TCEANC2Q96MN5 208 aa14.35□□□□□ -0.11
CCDC40-208ENST00000572270 PPP1R10Q96QC0 940 aaKnown RBP14.35□□□□□ -0.11
CCDC40-208ENST00000572270 UBL7Q96S82 380 aaPredicted RBP14.35□□□□□ -0.11
CCDC40-208ENST00000572270 TPSD1Q9BZJ3 242 aa14.35□□□□□ -0.11
CCDC40-208ENST00000572270 ATXN3LQ9H3M9 355 aa14.35□□□□□ -0.11
CCDC40-208ENST00000572270 VPS54Q9P1Q0 977 aa14.35□□□□□ -0.11
CCDC40-208ENST00000572270 RAXQ9Y2V3 346 aa14.35□□□□□ -0.11
CCDC40-208ENST00000572270 ZBTB39O15060 712 aa14.34□□□□□ -0.11
CCDC40-208ENST00000572270 PRB1P04280 392 aa14.34□□□□□ -0.11
CCDC40-208ENST00000572270 CYP4A11Q02928 519 aa14.34□□□□□ -0.11
CCDC40-208ENST00000572270 PRPF4BQ13523 1007 aaKnown RBP14.34□□□□□ -0.11
CCDC40-208ENST00000572270 RUNX3Q13761 415 aa14.34□□□□□ -0.11
CCDC40-208ENST00000572270 CTTNQ14247 550 aaKnown RBP14.34□□□□□ -0.11
CCDC40-208ENST00000572270 RNF19BQ6ZMZ0 732 aa14.34□□□□□ -0.11
CCDC40-208ENST00000572270 TSTD1Q8NFU3 115 aa14.34□□□□□ -0.11
CCDC40-208ENST00000572270 MDM1Q8TC05 714 aa14.34□□□□□ -0.11
CCDC40-208ENST00000572270 DYDC2Q96IM9 177 aa14.34□□□□□ -0.11
CCDC40-208ENST00000572270 FAM20AQ96MK3 541 aa14.34□□□□□ -0.11
CCDC40-208ENST00000572270 POLR3FQ9H1D9 316 aaPredicted RBP14.34□□□□□ -0.11
CCDC40-208ENST00000572270 RGL1Q9NZL6 768 aa14.34□□□□□ -0.11
CCDC40-208ENST00000572270 NUB1Q9Y5A7 615 aa14.34□□□□□ -0.11
CCDC40-208ENST00000572270 TRIP11Q15643 1979 aa14.33□□□□□ -0.12
CCDC40-208ENST00000572270 PODXLO00592 558 aa14.33□□□□□ -0.12
CCDC40-208ENST00000572270 SLC37A4O43826 429 aa14.33□□□□□ -0.12
CCDC40-208ENST00000572270 MARCH6O60337 910 aa14.33□□□□□ -0.12
CCDC40-208ENST00000572270 PRAMEF12O95522 483 aa14.33□□□□□ -0.12
CCDC40-208ENST00000572270 BCKDHBP21953 392 aa14.33□□□□□ -0.12
CCDC40-208ENST00000572270 DPP6P42658 865 aa14.33□□□□□ -0.12
CCDC40-208ENST00000572270 ALDH1A3P47895 512 aa14.33□□□□□ -0.12
CCDC40-208ENST00000572270 PSMD2Q13200 908 aa14.33□□□□□ -0.12
CCDC40-208ENST00000572270 MRPL58Q14197 206 aaKnown RBP14.33□□□□□ -0.12
CCDC40-208ENST00000572270 MAPK6Q16659 721 aa14.33□□□□□ -0.12
CCDC40-208ENST00000572270 FAM187BQ17R55 369 aa14.33□□□□□ -0.12
CCDC40-208ENST00000572270 DCAF4L1Q3SXM0 396 aa14.33□□□□□ -0.12
CCDC40-208ENST00000572270 NCAPH2Q6IBW4 605 aa14.33□□□□□ -0.12
CCDC40-208ENST00000572270 TPH2Q8IWU9 490 aa14.33□□□□□ -0.12
CCDC40-208ENST00000572270 LRRC3Q9BY71 257 aa14.33□□□□□ -0.12
CCDC40-208ENST00000572270 LSG1Q9H089 658 aaKnown RBP14.33□□□□□ -0.12
CCDC40-208ENST00000572270 GKN1Q9NS71 199 aa14.33□□□□□ -0.12
CCDC40-208ENST00000572270 CACNA1EQ15878 2313 aa14.33□□□□□ -0.12
CCDC40-208ENST00000572270 CYSRT1A8MQ03 144 aa14.32□□□□□ -0.12
CCDC40-208ENST00000572270 TK2O00142 265 aa14.32□□□□□ -0.12
CCDC40-208ENST00000572270 OPHN1O60890 802 aa14.32□□□□□ -0.12
CCDC40-208ENST00000572270 IGHDP01880 384 aa14.32□□□□□ -0.12
CCDC40-208ENST00000572270 PLA2G2AP14555 144 aa14.32□□□□□ -0.12
CCDC40-208ENST00000572270 FAM193AP78312 1265 aa14.32□□□□□ -0.12
CCDC40-208ENST00000572270 AAMPQ13685 434 aa14.32□□□□□ -0.12
CCDC40-208ENST00000572270 NECTIN1Q15223 517 aa14.32□□□□□ -0.12
Retrieved 100 of 20,778 RNA–protein pairs in 30.1 ms