RNA–Protein interactions for RNA: ENST00000571805.5

VPS53-211, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 1 (best) BASIC

Gene VPS53, Length 2,356 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-211ENST00000571805 ITIH4Q14624 930 aa24.21■■□□□ 1.47
VPS53-211ENST00000571805 SCARA3Q6AZY7 606 aa24.21■■□□□ 1.47
VPS53-211ENST00000571805 DEPTORQ8TB45 409 aa24.21■■□□□ 1.47
VPS53-211ENST00000571805 FAM118BQ9BPY3 351 aa24.21■■□□□ 1.47
VPS53-211ENST00000571805 MSTO1Q9BUK6 570 aa24.21■■□□□ 1.47
VPS53-211ENST00000571805 NINJ2Q9NZG7 142 aa24.21■■□□□ 1.47
VPS53-211ENST00000571805 FBXO40Q9UH90 709 aa24.21■■□□□ 1.47
VPS53-211ENST00000571805 TCEA3O75764 348 aa24.2■■□□□ 1.46
VPS53-211ENST00000571805 VSTM1Q6UX27 236 aa24.2■■□□□ 1.46
VPS53-211ENST00000571805 EXD1Q8NHP7 514 aa24.2■■□□□ 1.46
VPS53-211ENST00000571805 KLC4Q9NSK0 619 aa24.2■■□□□ 1.46
VPS53-211ENST00000571805 VPS41P49754 854 aa24.2■■□□□ 1.46
VPS53-211ENST00000571805 C1QBPQ07021 282 aaKnown RBP24.2■■□□□ 1.46
VPS53-211ENST00000571805 ELAC2Q9BQ52 826 aaKnown RBP24.2■■□□□ 1.46
VPS53-211ENST00000571805 CTNNAL1Q9UBT7 734 aa24.2■■□□□ 1.46
VPS53-211ENST00000571805 SCINQ9Y6U3 715 aa24.2■■□□□ 1.46
VPS53-211ENST00000571805 C19orf81C9J6K1 198 aa24.19■■□□□ 1.46
VPS53-211ENST00000571805 NFKBIEO00221 500 aa24.19■■□□□ 1.46
VPS53-211ENST00000571805 TLR3O15455 904 aaKnown RBP24.19■■□□□ 1.46
VPS53-211ENST00000571805 GJB6O95452 261 aa24.19■■□□□ 1.46
VPS53-211ENST00000571805 VIMP08670 466 aaKnown RBP24.19■■□□□ 1.46
VPS53-211ENST00000571805 TBXAS1P24557 533 aaPredicted RBP24.19■■□□□ 1.46
VPS53-211ENST00000571805 ICAM3P32942 547 aa24.19■■□□□ 1.46
VPS53-211ENST00000571805 NOP14P78316 857 aaKnown RBP24.19■■□□□ 1.46
VPS53-211ENST00000571805 FSTL1Q12841 308 aa24.19■■□□□ 1.46
VPS53-211ENST00000571805 ANKS4BQ8N8V4 417 aa24.19■■□□□ 1.46
VPS53-211ENST00000571805 NIFKQ9BYG3 293 aaKnown RBP24.19■■□□□ 1.46
VPS53-211ENST00000571805 ANKFY1Q9P2R3 1169 aa24.19■■□□□ 1.46
VPS53-211ENST00000571805 THAP12O43422 761 aa24.18■■□□□ 1.46
VPS53-211ENST00000571805 POTEJP0CG39 1038 aa24.18■■□□□ 1.46
VPS53-211ENST00000571805 CD58P19256 250 aa24.18■■□□□ 1.46
VPS53-211ENST00000571805 PRAMEF18Q5VWM3 479 aa24.18■■□□□ 1.46
VPS53-211ENST00000571805 FEZF2Q8TBJ5 459 aa24.18■■□□□ 1.46
VPS53-211ENST00000571805 USTQ9Y2C2 406 aa24.18■■□□□ 1.46
VPS53-211ENST00000571805 TMEM120BA0PK00 339 aa24.18■■□□□ 1.46
VPS53-211ENST00000571805 KLRC2P26717 231 aa24.18■■□□□ 1.46
VPS53-211ENST00000571805 ZNF132P52740 706 aa24.18■■□□□ 1.46
VPS53-211ENST00000571805 SWT1Q5T5J6 900 aaKnown RBP24.18■■□□□ 1.46
VPS53-211ENST00000571805 UBR7Q8N806 425 aa24.18■■□□□ 1.46
VPS53-211ENST00000571805 CCDC89Q8N998 374 aa24.18■■□□□ 1.46
VPS53-211ENST00000571805 IGKV6D-21A0A0A0MT36 114 aa24.17■■□□□ 1.46
VPS53-211ENST00000571805 STXBP2Q15833 593 aa24.17■■□□□ 1.46
VPS53-211ENST00000571805 ZNF365Q70YC5 407 aa24.17■■□□□ 1.46
VPS53-211ENST00000571805 TAX1BP1Q86VP1 789 aa24.17■■□□□ 1.46
VPS53-211ENST00000571805 RELL1Q8IUW5 271 aa24.17■■□□□ 1.46
VPS53-211ENST00000571805 PARVAQ9NVD7 372 aa24.17■■□□□ 1.46
VPS53-211ENST00000571805 SAMD15Q9P1V8 674 aa24.17■■□□□ 1.46
VPS53-211ENST00000571805 FOXO6A8MYZ6 492 aa24.17■■□□□ 1.46
VPS53-211ENST00000571805 ATP2C2O75185 946 aa24.17■■□□□ 1.46
VPS53-211ENST00000571805 ATP5DP30049 168 aa24.17■■□□□ 1.46
VPS53-211ENST00000571805 NCOA4Q13772 614 aa24.17■■□□□ 1.46
VPS53-211ENST00000571805 LRRC14Q15048 493 aa24.17■■□□□ 1.46
VPS53-211ENST00000571805 SEZ6Q53EL9 994 aa24.17■■□□□ 1.46
VPS53-211ENST00000571805 PPP1R2P3Q6NXS1 205 aa24.17■■□□□ 1.46
VPS53-211ENST00000571805 FUKQ8N0W3 1084 aa24.17■■□□□ 1.46
VPS53-211ENST00000571805 BBOF1Q8ND07 529 aa24.17■■□□□ 1.46
VPS53-211ENST00000571805 ZNF606Q8WXB4 792 aa24.17■■□□□ 1.46
VPS53-211ENST00000571805 SLC7A3Q8WY07 619 aa24.17■■□□□ 1.46
VPS53-211ENST00000571805 FAM212AQ96EL1 285 aa24.17■■□□□ 1.46
VPS53-211ENST00000571805 MAF1Q9H063 256 aa24.17■■□□□ 1.46
VPS53-211ENST00000571805 TMEM134Q9H6X4 195 aa24.17■■□□□ 1.46
VPS53-211ENST00000571805 SPDYE16A6NNV3 312 aaPredicted RBP24.16■■□□□ 1.46
VPS53-211ENST00000571805 MMP8P22894 467 aa24.16■■□□□ 1.46
VPS53-211ENST00000571805 MNAT1P51948 309 aa24.16■■□□□ 1.46
VPS53-211ENST00000571805 SF3A3Q12874 501 aaKnown RBP eCLIP24.16■■□□□ 1.46
VPS53-211ENST00000571805 DALRD3Q5D0E6 543 aaKnown RBP24.16■■□□□ 1.46
VPS53-211ENST00000571805 IZUMO3Q5VZ72 239 aa24.16■■□□□ 1.46
VPS53-211ENST00000571805 HAUS2Q9NVX0 235 aa24.16■■□□□ 1.46
VPS53-211ENST00000571805 LOC285556D6RIA3 1793 aa24.16■■□□□ 1.46
VPS53-211ENST00000571805 DNAJC8O75937 253 aaPredicted RBP24.16■■□□□ 1.46
VPS53-211ENST00000571805 GTF2A1P52655 376 aaPredicted RBP24.16■■□□□ 1.46
VPS53-211ENST00000571805 TGFB2P61812 414 aa24.16■■□□□ 1.46
VPS53-211ENST00000571805 RPL7AP62424 266 aaKnown RBP24.16■■□□□ 1.46
VPS53-211ENST00000571805 XRCC4Q13426 336 aa24.16■■□□□ 1.46
VPS53-211ENST00000571805 ATP13A4Q4VNC1 1196 aa24.16■■□□□ 1.46
VPS53-211ENST00000571805 HIBCHQ6NVY1 386 aaPredicted RBP24.16■■□□□ 1.46
VPS53-211ENST00000571805 PRUNE1Q86TP1 453 aa24.16■■□□□ 1.46
VPS53-211ENST00000571805 CYP4X1Q8N118 509 aa24.16■■□□□ 1.46
VPS53-211ENST00000571805 IP6K2Q9UHH9 426 aa24.16■■□□□ 1.46
VPS53-211ENST00000571805 LGALS13Q9UHV8 139 aa24.16■■□□□ 1.46
VPS53-211ENST00000571805 CST3P01034 146 aaPredicted RBP24.15■■□□□ 1.46
VPS53-211ENST00000571805 CETPP11597 493 aa24.15■■□□□ 1.46
VPS53-211ENST00000571805 GJC1P36383 396 aa24.15■■□□□ 1.46
VPS53-211ENST00000571805 SSR1P43307 286 aaKnown RBP24.15■■□□□ 1.46
VPS53-211ENST00000571805 NFX1Q12986 1120 aaKnown RBP24.15■■□□□ 1.46
VPS53-211ENST00000571805 MPP2Q14168 576 aa24.15■■□□□ 1.46
VPS53-211ENST00000571805 TARBP2Q15633 366 aaKnown RBP24.15■■□□□ 1.46
VPS53-211ENST00000571805 PCYT2Q99447 389 aa24.15■■□□□ 1.46
VPS53-211ENST00000571805 NSRP1Q9H0G5 558 aaKnown RBP24.15■■□□□ 1.46
VPS53-211ENST00000571805 HOXC10Q9NYD6 342 aa24.15■■□□□ 1.46
VPS53-211ENST00000571805 TMEM191CA6NGB0 347 aa24.15■■□□□ 1.46
VPS53-211ENST00000571805 TTLL13PA6NNM8 815 aa24.15■■□□□ 1.46
VPS53-211ENST00000571805 SNX3O60493 162 aa24.15■■□□□ 1.46
VPS53-211ENST00000571805 OAS1P00973 400 aaKnown RBP24.15■■□□□ 1.46
VPS53-211ENST00000571805 TMEM191BP0C7N4 346 aa24.15■■□□□ 1.46
VPS53-211ENST00000571805 TCF4P15884 667 aa24.15■■□□□ 1.46
VPS53-211ENST00000571805 CNTN2Q02246 1040 aa24.15■■□□□ 1.46
VPS53-211ENST00000571805 CAPSQ13938 189 aa24.15■■□□□ 1.46
VPS53-211ENST00000571805 MGARPQ8TDB4 240 aa24.15■■□□□ 1.46
VPS53-211ENST00000571805 ZNF252P-AS1Q0IIN9 211 aa24.14■■□□□ 1.46
Retrieved 100 of 20,778 RNA–protein pairs in 15.4 ms