RNA–Protein interactions for RNA: ENST00000570937.1

NUP88-202, Transcript of nucleoporin 88, humanhuman

TSL 3

Gene NUP88, Length 361 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP88-202ENST00000570937 MYEOVQ96EZ4 313 aa5.29□□□□□ -1.56
NUP88-202ENST00000570937 FAM193BQ96PV7 902 aaPredicted RBP5.29□□□□□ -1.56
NUP88-202ENST00000570937 LDAHQ9H6V9 325 aa5.29□□□□□ -1.56
NUP88-202ENST00000570937 DKK2Q9UBU2 259 aa5.29□□□□□ -1.56
NUP88-202ENST00000570937 SLC23A1Q9UHI7 598 aa5.29□□□□□ -1.56
NUP88-202ENST00000570937 REXO2Q9Y3B8 237 aaKnown RBP5.29□□□□□ -1.56
NUP88-202ENST00000570937 IPPQ9Y573 584 aa5.29□□□□□ -1.56
NUP88-202ENST00000570937 TMEM200CA6NKL6 621 aa5.28□□□□□ -1.56
NUP88-202ENST00000570937 RNASET2O00584 256 aaKnown RBP5.28□□□□□ -1.56
NUP88-202ENST00000570937 HTRA2O43464 458 aaPredicted RBP5.28□□□□□ -1.56
NUP88-202ENST00000570937 SGTAO43765 313 aa5.28□□□□□ -1.56
NUP88-202ENST00000570937 RPS6KA4O75676 772 aa5.28□□□□□ -1.56
NUP88-202ENST00000570937 POMCP01189 267 aa5.28□□□□□ -1.56
NUP88-202ENST00000570937 RAP2AP10114 183 aa5.28□□□□□ -1.56
NUP88-202ENST00000570937 DDCP20711 480 aa5.28□□□□□ -1.56
NUP88-202ENST00000570937 BMPR1AP36894 532 aa5.28□□□□□ -1.56
NUP88-202ENST00000570937 ADKP55263 362 aaKnown RBP5.28□□□□□ -1.56
NUP88-202ENST00000570937 RNASE9P60153 205 aaKnown RBP5.28□□□□□ -1.56
NUP88-202ENST00000570937 FAM189BP81408 668 aa5.28□□□□□ -1.56
NUP88-202ENST00000570937 PTPN21Q16825 1174 aa5.28□□□□□ -1.56
NUP88-202ENST00000570937 BRDTQ58F21 947 aaPredicted RBP5.28□□□□□ -1.56
NUP88-202ENST00000570937 AGAP9Q5VTM2 703 aa5.28□□□□□ -1.56
NUP88-202ENST00000570937 MIGA2Q7L4E1 593 aa5.28□□□□□ -1.56
NUP88-202ENST00000570937 SYNE4Q8N205 404 aa5.28□□□□□ -1.56
NUP88-202ENST00000570937 ZGPATQ8N5A5 531 aaKnown RBP5.28□□□□□ -1.56
NUP88-202ENST00000570937 HDAC10Q969S8 669 aa5.28□□□□□ -1.56
NUP88-202ENST00000570937 NEU1Q99519 415 aa5.28□□□□□ -1.56
NUP88-202ENST00000570937 PRRX2Q99811 253 aa5.28□□□□□ -1.56
NUP88-202ENST00000570937 AKIP1Q9NQ31 210 aa5.28□□□□□ -1.56
NUP88-202ENST00000570937 TRPM5Q9NZQ8 1165 aa5.28□□□□□ -1.56
NUP88-202ENST00000570937 ING1Q9UK53 422 aaPredicted RBP5.28□□□□□ -1.56
NUP88-202ENST00000570937 ACTL7AQ9Y615 435 aa5.28□□□□□ -1.56
NUP88-202ENST00000570937 NCOA3Q9Y6Q9 1424 aa5.28□□□□□ -1.56
NUP88-202ENST00000570937 KIF1BO60333 1816 aa5.27□□□□□ -1.57
NUP88-202ENST00000570937 MYBBP1AQ9BQG0 1328 aaKnown RBP5.27□□□□□ -1.57
NUP88-202ENST00000570937 CLTCL1P53675 1640 aa5.27□□□□□ -1.57
NUP88-202ENST00000570937 ZNF185O15231 689 aa5.27□□□□□ -1.57
NUP88-202ENST00000570937 SPATA31D3P0C874 917 aa5.27□□□□□ -1.57
NUP88-202ENST00000570937 LAG3P18627 525 aa5.27□□□□□ -1.57
NUP88-202ENST00000570937 ATF3P18847 181 aa5.27□□□□□ -1.57
NUP88-202ENST00000570937 EDNRBP24530 442 aa5.27□□□□□ -1.57
NUP88-202ENST00000570937 CHN2P52757 468 aa5.27□□□□□ -1.57
NUP88-202ENST00000570937 CTXN1P60606 82 aa5.27□□□□□ -1.57
NUP88-202ENST00000570937 RAP2BP61225 183 aa5.27□□□□□ -1.57
NUP88-202ENST00000570937 CDC42EP1Q00587 391 aa5.27□□□□□ -1.57
NUP88-202ENST00000570937 EXOSC10Q01780 885 aaKnown RBP5.27□□□□□ -1.57
NUP88-202ENST00000570937 FHL2Q14192 279 aa5.27□□□□□ -1.57
NUP88-202ENST00000570937 DIP2AQ14689 1571 aa5.27□□□□□ -1.57
NUP88-202ENST00000570937 UBXN2BQ14CS0 331 aa5.27□□□□□ -1.57
NUP88-202ENST00000570937 BEAN1Q3B7T3 259 aa5.27□□□□□ -1.57
NUP88-202ENST00000570937 PDCD4Q53EL6 469 aaKnown RBP5.27□□□□□ -1.57
NUP88-202ENST00000570937 DACT2Q5SW24 774 aa5.27□□□□□ -1.57
NUP88-202ENST00000570937 Q6ZPA2 131 aa5.27□□□□□ -1.57
NUP88-202ENST00000570937 SPATA31D4Q6ZUB0 917 aa5.27□□□□□ -1.57
NUP88-202ENST00000570937 PNMA8AQ86V59 439 aaPredicted RBP5.27□□□□□ -1.57
NUP88-202ENST00000570937 RHOT2Q8IXI1 618 aa5.27□□□□□ -1.57
NUP88-202ENST00000570937 RHOT1Q8IXI2 618 aa5.27□□□□□ -1.57
NUP88-202ENST00000570937 CCHCR1Q8TD31 782 aa5.27□□□□□ -1.57
NUP88-202ENST00000570937 NEU4Q8WWR8 484 aaPredicted RBP5.27□□□□□ -1.57
NUP88-202ENST00000570937 LIMCH1Q9UPQ0 1083 aa5.27□□□□□ -1.57
NUP88-202ENST00000570937 LRRC7Q96NW7 1537 aa5.27□□□□□ -1.57
NUP88-202ENST00000570937 MSH6P52701 1360 aa5.27□□□□□ -1.57
NUP88-202ENST00000570937 TMEM94Q12767 1356 aa5.27□□□□□ -1.57
NUP88-202ENST00000570937 NKTRP30414 1462 aaKnown RBP5.26□□□□□ -1.57
NUP88-202ENST00000570937 SPATA31E1Q6ZUB1 1445 aa5.26□□□□□ -1.57
NUP88-202ENST00000570937 MARCH11A6NNE9 402 aa5.26□□□□□ -1.57
NUP88-202ENST00000570937 NCR1O76036 304 aa5.26□□□□□ -1.57
NUP88-202ENST00000570937 DPTQ07507 201 aa5.26□□□□□ -1.57
NUP88-202ENST00000570937 TARDBPQ13148 414 aaKnown RBP eCLIP5.26□□□□□ -1.57
NUP88-202ENST00000570937 ODF1Q14990 250 aa5.26□□□□□ -1.57
NUP88-202ENST00000570937 TIGD2Q4W5G0 525 aa5.26□□□□□ -1.57
NUP88-202ENST00000570937 LY6G5CQ5SRR4 150 aa5.26□□□□□ -1.57
NUP88-202ENST00000570937 ZNF529Q6P280 563 aa5.26□□□□□ -1.57
NUP88-202ENST00000570937 MED25Q71SY5 747 aa5.26□□□□□ -1.57
NUP88-202ENST00000570937 ZNF627Q7L945 461 aa5.26□□□□□ -1.57
NUP88-202ENST00000570937 MYOCQ99972 504 aa5.26□□□□□ -1.57
NUP88-202ENST00000570937 MRIQ9BWK5 157 aa5.26□□□□□ -1.57
NUP88-202ENST00000570937 TDP1Q9NUW8 608 aa5.26□□□□□ -1.57
NUP88-202ENST00000570937 TYW1Q9NV66 732 aaKnown RBP5.26□□□□□ -1.57
NUP88-202ENST00000570937 KLHL11Q9NVR0 708 aa5.26□□□□□ -1.57
NUP88-202ENST00000570937 NIPSNAP3AQ9UFN0 247 aaPredicted RBP5.26□□□□□ -1.57
NUP88-202ENST00000570937 ATP11BQ9Y2G3 1177 aa5.26□□□□□ -1.57
NUP88-202ENST00000570937 USP15Q9Y4E8 981 aaPredicted RBP5.26□□□□□ -1.57
NUP88-202ENST00000570937 SETBP1Q9Y6X0 1596 aa5.25□□□□□ -1.57
NUP88-202ENST00000570937 ADAMTS13Q76LX8 1427 aa5.25□□□□□ -1.57
NUP88-202ENST00000570937 ZRANB2O95218 330 aaKnown RBP eCLIP5.25□□□□□ -1.57
NUP88-202ENST00000570937 ABHD16AO95870 558 aa5.25□□□□□ -1.57
NUP88-202ENST00000570937 CFIP05156 583 aa5.25□□□□□ -1.57
NUP88-202ENST00000570937 ALAS1P13196 640 aa5.25□□□□□ -1.57
NUP88-202ENST00000570937 GCSHP23434 173 aa5.25□□□□□ -1.57
NUP88-202ENST00000570937 RECQLP46063 649 aaPredicted RBP5.25□□□□□ -1.57
NUP88-202ENST00000570937 KIF23Q02241 960 aaPredicted RBP5.25□□□□□ -1.57
NUP88-202ENST00000570937 ATP2B3Q16720 1220 aa5.25□□□□□ -1.57
NUP88-202ENST00000570937 C3orf36Q3SXR2 165 aa5.25□□□□□ -1.57
NUP88-202ENST00000570937 TMEM240Q5SV17 173 aa5.25□□□□□ -1.57
NUP88-202ENST00000570937 PPP4R3AQ6IN85 833 aa5.25□□□□□ -1.57
NUP88-202ENST00000570937 ARMC6Q6NXE6 501 aa5.25□□□□□ -1.57
NUP88-202ENST00000570937 LDLRAD3Q86YD5 345 aa5.25□□□□□ -1.57
NUP88-202ENST00000570937 ARHGEF19Q8IW93 802 aa5.25□□□□□ -1.57
NUP88-202ENST00000570937 IFI44Q8TCB0 444 aa5.25□□□□□ -1.57
Retrieved 100 of 20,778 RNA–protein pairs in 28.5 ms