RNA–Protein interactions for RNA: ENST00000570273.5

HERPUD1-219, Transcript of homocysteine inducible ER protein with ubiquitin like domain 1, humanhuman

TSL 1 (best)

Gene HERPUD1, Length 1,425 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HERPUD1-219ENST00000570273 TAF6P49848 677 aa16.54■□□□□ 0.24
HERPUD1-219ENST00000570273 JAM2P57087 298 aa16.54■□□□□ 0.24
HERPUD1-219ENST00000570273 TNNC1P63316 161 aa16.54■□□□□ 0.24
HERPUD1-219ENST00000570273 WDR72Q3MJ13 1102 aa16.54■□□□□ 0.24
HERPUD1-219ENST00000570273 SV2CQ496J9 727 aa16.54■□□□□ 0.24
HERPUD1-219ENST00000570273 PAN2Q504Q3 1202 aaKnown RBP16.54■□□□□ 0.24
HERPUD1-219ENST00000570273 TMEM240Q5SV17 173 aa16.54■□□□□ 0.24
HERPUD1-219ENST00000570273 FAM117BQ6P1L5 589 aa16.54■□□□□ 0.24
HERPUD1-219ENST00000570273 LRRC43Q8N309 656 aa16.54■□□□□ 0.24
HERPUD1-219ENST00000570273 OR8K1Q8NGG5 319 aa16.54■□□□□ 0.24
HERPUD1-219ENST00000570273 DDX27Q96GQ7 796 aaKnown RBP16.54■□□□□ 0.24
HERPUD1-219ENST00000570273 DNAJC7Q99615 494 aa16.54■□□□□ 0.24
HERPUD1-219ENST00000570273 ARID3AQ99856 593 aa16.54■□□□□ 0.24
HERPUD1-219ENST00000570273 BUD13Q9BRD0 619 aaKnown RBP eCLIP16.54■□□□□ 0.247e-9■■□□□ 13.7
HERPUD1-219ENST00000570273 NUCKS1Q9H1E3 243 aaKnown RBP16.54■□□□□ 0.24
HERPUD1-219ENST00000570273 MYO6Q9UM54 1294 aa16.54■□□□□ 0.24
HERPUD1-219ENST00000570273 NR2E3Q9Y5X4 410 aa16.54■□□□□ 0.24
HERPUD1-219ENST00000570273 TRIP11Q15643 1979 aa16.54■□□□□ 0.24
HERPUD1-219ENST00000570273 TTC3P53804 2025 aa16.54■□□□□ 0.24
HERPUD1-219ENST00000570273 CEP290O15078 2479 aa16.54■□□□□ 0.24
HERPUD1-219ENST00000570273 PNMA6AP0CW24 399 aaPredicted RBP16.53■□□□□ 0.24
HERPUD1-219ENST00000570273 STAT1P42224 750 aa16.53■□□□□ 0.24
HERPUD1-219ENST00000570273 ASPAP45381 313 aa16.53■□□□□ 0.24
HERPUD1-219ENST00000570273 CLCNKBP51801 687 aa16.53■□□□□ 0.24
HERPUD1-219ENST00000570273 ASIC2Q16515 512 aa16.53■□□□□ 0.24
HERPUD1-219ENST00000570273 SFMBT2Q5VUG0 894 aa16.53■□□□□ 0.24
HERPUD1-219ENST00000570273 TOP1MTQ969P6 601 aa16.53■□□□□ 0.24
HERPUD1-219ENST00000570273 PANX2Q96RD6 677 aa16.53■□□□□ 0.24
HERPUD1-219ENST00000570273 ZNHIT6Q9NWK9 470 aaKnown RBP16.53■□□□□ 0.24
HERPUD1-219ENST00000570273 B4GALT3O60512 393 aa16.53■□□□□ 0.24
HERPUD1-219ENST00000570273 DDHD2O94830 711 aa16.53■□□□□ 0.24
HERPUD1-219ENST00000570273 SOX5P35711 763 aa16.53■□□□□ 0.24
HERPUD1-219ENST00000570273 YWHAEP62258 255 aaKnown RBP16.53■□□□□ 0.24
HERPUD1-219ENST00000570273 DSC1Q08554 894 aa16.53■□□□□ 0.24
HERPUD1-219ENST00000570273 E4F1Q66K89 784 aaPredicted RBP16.53■□□□□ 0.24
HERPUD1-219ENST00000570273 TMCO2Q7Z6W1 182 aaPredicted RBP16.53■□□□□ 0.24
HERPUD1-219ENST00000570273 ZNF280BQ86YH2 543 aa16.53■□□□□ 0.24
HERPUD1-219ENST00000570273 SHC3Q92529 594 aa16.53■□□□□ 0.24
HERPUD1-219ENST00000570273 RABGGTAQ92696 567 aa16.53■□□□□ 0.24
HERPUD1-219ENST00000570273 GPR88Q9GZN0 384 aa16.53■□□□□ 0.24
HERPUD1-219ENST00000570273 SMYD3Q9H7B4 428 aa16.53■□□□□ 0.24
HERPUD1-219ENST00000570273 SNX9Q9Y5X1 595 aa16.53■□□□□ 0.24
HERPUD1-219ENST00000570273 RANBP2P49792 3224 aaKnown RBP16.52■□□□□ 0.24
HERPUD1-219ENST00000570273 SPTLC1O15269 473 aa16.52■□□□□ 0.23
HERPUD1-219ENST00000570273 NRDCO43847 1150 aa16.52■□□□□ 0.23
HERPUD1-219ENST00000570273 DGKIO75912 1065 aa16.52■□□□□ 0.23
HERPUD1-219ENST00000570273 GFPT2O94808 682 aa16.52■□□□□ 0.23
HERPUD1-219ENST00000570273 KRT5P13647 590 aa16.52■□□□□ 0.23
HERPUD1-219ENST00000570273 CD58P19256 250 aa16.52■□□□□ 0.23
HERPUD1-219ENST00000570273 USP8P40818 1118 aa16.52■□□□□ 0.23
HERPUD1-219ENST00000570273 RAP1GAPP47736 663 aa16.52■□□□□ 0.23
HERPUD1-219ENST00000570273 OR1G1P47890 313 aa16.52■□□□□ 0.23
HERPUD1-219ENST00000570273 ARID5AQ03989 594 aa16.52■□□□□ 0.23
HERPUD1-219ENST00000570273 UPP1Q16831 310 aa16.52■□□□□ 0.23
HERPUD1-219ENST00000570273 FMNL3Q8IVF7 1028 aa16.52■□□□□ 0.23
HERPUD1-219ENST00000570273 LRRC8AQ8IWT6 810 aa16.52■□□□□ 0.23
HERPUD1-219ENST00000570273 COLGALT2Q8IYK4 626 aa16.52■□□□□ 0.23
HERPUD1-219ENST00000570273 SYN2Q92777 582 aaPredicted RBP16.52■□□□□ 0.23
HERPUD1-219ENST00000570273 FAXDC2Q96IV6 333 aa16.52■□□□□ 0.23
HERPUD1-219ENST00000570273 MMS19Q96T76 1030 aa16.52■□□□□ 0.23
HERPUD1-219ENST00000570273 PAAF1Q9BRP4 392 aa16.52■□□□□ 0.23
HERPUD1-219ENST00000570273 BCO2Q9BYV7 579 aa16.52■□□□□ 0.23
HERPUD1-219ENST00000570273 MTIF3Q9H2K0 278 aaKnown RBP16.52■□□□□ 0.23
HERPUD1-219ENST00000570273 PCDHB4Q9Y5E5 795 aa16.52■□□□□ 0.23
HERPUD1-219ENST00000570273 KPNA7A9QM74 516 aa16.51■□□□□ 0.23
HERPUD1-219ENST00000570273 FOXN3O00409 490 aaPredicted RBP16.51■□□□□ 0.23
HERPUD1-219ENST00000570273 WEE2P0C1S8 567 aa16.51■□□□□ 0.23
HERPUD1-219ENST00000570273 FERP16591 822 aa16.51■□□□□ 0.23
HERPUD1-219ENST00000570273 LILRA4P59901 499 aa16.51■□□□□ 0.23
HERPUD1-219ENST00000570273 C3orf58Q8NDZ4 430 aa16.51■□□□□ 0.23
HERPUD1-219ENST00000570273 CCDC112Q8NEF3 446 aa16.51■□□□□ 0.23
HERPUD1-219ENST00000570273 HERVK_113Q902F9 699 aa16.51■□□□□ 0.23
HERPUD1-219ENST00000570273 JAKMIP2Q96AA8 810 aa16.51■□□□□ 0.23
HERPUD1-219ENST00000570273 TRIM44Q96DX7 344 aaPredicted RBP16.51■□□□□ 0.23
HERPUD1-219ENST00000570273 SDCBP2Q9H190 292 aa16.51■□□□□ 0.23
HERPUD1-219ENST00000570273 NRDE2Q9H7Z3 1164 aa16.51■□□□□ 0.23
HERPUD1-219ENST00000570273 CYP3A43Q9HB55 503 aa16.51■□□□□ 0.23
HERPUD1-219ENST00000570273 CXXC1Q9P0U4 656 aaPredicted RBP16.51■□□□□ 0.23
HERPUD1-219ENST00000570273 HCSTQ9UBK5 93 aa16.51■□□□□ 0.23
HERPUD1-219ENST00000570273 DNAJB4Q9UDY4 337 aa16.51■□□□□ 0.23
HERPUD1-219ENST00000570273 PRG3Q9Y2Y8 225 aaPredicted RBP16.51■□□□□ 0.23
HERPUD1-219ENST00000570273 TDRD15B5MCY1 1934 aaKnown RBP16.5■□□□□ 0.23
HERPUD1-219ENST00000570273 B3GAT3O94766 335 aa16.5■□□□□ 0.23
HERPUD1-219ENST00000570273 KIF4AO95239 1232 aa16.5■□□□□ 0.23
HERPUD1-219ENST00000570273 ACO1P21399 889 aaKnown RBP16.5■□□□□ 0.23
HERPUD1-219ENST00000570273 HNRNPH3P31942 346 aaKnown RBP16.5■□□□□ 0.23
HERPUD1-219ENST00000570273 MEA1Q16626 185 aa16.5■□□□□ 0.23
HERPUD1-219ENST00000570273 TDRD12Q587J7 1177 aaKnown RBP16.5■□□□□ 0.23
HERPUD1-219ENST00000570273 DCLRE1AQ6PJP8 1040 aa16.5■□□□□ 0.23
HERPUD1-219ENST00000570273 DSTYKQ6XUX3 929 aa16.5■□□□□ 0.23
HERPUD1-219ENST00000570273 UBR7Q8N806 425 aa16.5■□□□□ 0.23
HERPUD1-219ENST00000570273 HASPINQ8TF76 798 aa16.5■□□□□ 0.23
HERPUD1-219ENST00000570273 ZNF830Q96NB3 372 aaPredicted RBP16.5■□□□□ 0.23
HERPUD1-219ENST00000570273 YME1L1Q96TA2 773 aa16.5■□□□□ 0.23
HERPUD1-219ENST00000570273 BAG1Q99933 345 aaPredicted RBP16.5■□□□□ 0.23
HERPUD1-219ENST00000570273 CISHQ9NSE2 258 aa16.5■□□□□ 0.23
HERPUD1-219ENST00000570273 GDAP2Q9NXN4 497 aa16.5■□□□□ 0.23
HERPUD1-219ENST00000570273 AIPL1Q9NZN9 384 aa16.5■□□□□ 0.23
HERPUD1-219ENST00000570273 SLC4A7Q9Y6M7 1214 aa16.5■□□□□ 0.23
HERPUD1-219ENST00000570273 HUS1O60921 280 aa16.49■□□□□ 0.23
Retrieved 100 of 20,778 RNA–protein pairs in 36.2 ms