RNA–Protein interactions for RNA: ENST00000569430.6

CLN3-238, Transcript of CLN3, battenin, human

APPRIS P1 TSL 5 BASIC

Gene CLN3, Length 3,867 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CLN3-238	ENST00000569430	TMEM121	Q9BTD3	319 aa		12.02	□□□□□ -0.48
CLN3-238	ENST00000569430	LRRC4C	Q9HCJ2	640 aa		12.02	□□□□□ -0.48
CLN3-238	ENST00000569430	TUFT1	Q9NNX1	390 aa		12.02	□□□□□ -0.48
CLN3-238	ENST00000569430	ANLN	Q9NQW6	1124 aa		12.02	□□□□□ -0.48
CLN3-238	ENST00000569430	RHBDL2	Q9NX52	303 aa		12.02	□□□□□ -0.48
CLN3-238	ENST00000569430	APOBEC2	Q9Y235	224 aa	Known RBP	12.02	□□□□□ -0.48
CLN3-238	ENST00000569430	PCDHA3	Q9Y5H8	950 aa		12.02	□□□□□ -0.48
CLN3-238	ENST00000569430	SIPA1L3	O60292	1781 aa	Predicted RBP	12.02	□□□□□ -0.49
CLN3-238	ENST00000569430	QARS	P47897	775 aa	Known RBP	12.02	□□□□□ -0.49
CLN3-238	ENST00000569430	MAP3K21	Q5TCX8	1036 aa		12.02	□□□□□ -0.49
CLN3-238	ENST00000569430	ZNF570	Q96NI8	536 aa		12.02	□□□□□ -0.49
CLN3-238	ENST00000569430	APOL6	Q9BWW8	343 aa		12.02	□□□□□ -0.49
CLN3-238	ENST00000569430	TDRD3	Q9H7E2	651 aa	Known RBP	12.02	□□□□□ -0.49
CLN3-238	ENST00000569430	SLC9A2	Q9UBY0	812 aa		12.02	□□□□□ -0.49
CLN3-238	ENST00000569430	SLC12A4	Q9UP95	1085 aa		12.02	□□□□□ -0.49
CLN3-238	ENST00000569430	LRCH1	Q9Y2L9	728 aa		12.02	□□□□□ -0.49
CLN3-238	ENST00000569430	BCL9	O00512	1426 aa		12.02	□□□□□ -0.49
CLN3-238	ENST00000569430	RPL17-C18orf32	A0A0A6YYL6	228 aa	Known RBP	12.02	□□□□□ -0.49
CLN3-238	ENST00000569430	BBOX1	O75936	387 aa		12.02	□□□□□ -0.49
CLN3-238	ENST00000569430	P4HB	P07237	508 aa	Known RBP	12.02	□□□□□ -0.49
CLN3-238	ENST00000569430	ATP6V1B1	P15313	513 aa		12.02	□□□□□ -0.49
CLN3-238	ENST00000569430	SLC1A1	P43005	524 aa		12.02	□□□□□ -0.49
CLN3-238	ENST00000569430	NFIA	Q12857	509 aa		12.02	□□□□□ -0.49
CLN3-238	ENST00000569430	PTK7	Q13308	1070 aa		12.02	□□□□□ -0.49
CLN3-238	ENST00000569430	PLA2G4F	Q68DD2	849 aa		12.02	□□□□□ -0.49
CLN3-238	ENST00000569430	CHADL	Q6NUI6	762 aa		12.02	□□□□□ -0.49
CLN3-238	ENST00000569430	MIS18BP1	Q6P0N0	1132 aa		12.02	□□□□□ -0.49
CLN3-238	ENST00000569430	B4GALNT2	Q8NHY0	566 aa		12.02	□□□□□ -0.49
CLN3-238	ENST00000569430	ZNF75CP	Q92670	426 aa	Predicted RBP	12.02	□□□□□ -0.49
CLN3-238	ENST00000569430	ART4	Q93070	314 aa		12.02	□□□□□ -0.49
CLN3-238	ENST00000569430	FAM84A	Q96KN4	292 aa		12.02	□□□□□ -0.49
CLN3-238	ENST00000569430	N4BP2	Q86UW6	1770 aa	Predicted RBP	12.02	□□□□□ -0.49
CLN3-238	ENST00000569430	EME2	A4GXA9	379 aa	Predicted RBP	12.01	□□□□□ -0.49
CLN3-238	ENST00000569430	RPS6KA4	O75676	772 aa		12.01	□□□□□ -0.49
CLN3-238	ENST00000569430	GZMA	P12544	262 aa		12.01	□□□□□ -0.49
CLN3-238	ENST00000569430	PECAM1	P16284	738 aa	Predicted RBP	12.01	□□□□□ -0.49
CLN3-238	ENST00000569430	PPP3CA	Q08209	521 aa		12.01	□□□□□ -0.49
CLN3-238	ENST00000569430	NFX1	Q12986	1120 aa	Known RBP	12.01	□□□□□ -0.49
CLN3-238	ENST00000569430	BLMH	Q13867	455 aa		12.01	□□□□□ -0.49
CLN3-238	ENST00000569430	HIC1	Q14526	733 aa		12.01	□□□□□ -0.49
CLN3-238	ENST00000569430	SPDYC	Q5MJ68	293 aa		12.01	□□□□□ -0.49
CLN3-238	ENST00000569430	ZDHHC24	Q6UX98	284 aa		12.01	□□□□□ -0.49
CLN3-238	ENST00000569430	PRPF39	Q86UA1	669 aa	Known RBP	12.01	□□□□□ -0.49
CLN3-238	ENST00000569430	LRRC6	Q86X45	466 aa		12.01	□□□□□ -0.49
CLN3-238	ENST00000569430	DCLK3	Q9C098	648 aa		12.01	□□□□□ -0.49
CLN3-238	ENST00000569430	SMYD2	Q9NRG4	433 aa		12.01	□□□□□ -0.49
CLN3-238	ENST00000569430	ETAA1	Q9NY74	926 aa		12.01	□□□□□ -0.49
CLN3-238	ENST00000569430	GRHL1	Q9NZI5	618 aa		12.01	□□□□□ -0.49
CLN3-238	ENST00000569430	SEPT10	Q9P0V9	454 aa		12.01	□□□□□ -0.49
CLN3-238	ENST00000569430	LAMA4	Q16363	1823 aa		12.01	□□□□□ -0.49
CLN3-238	ENST00000569430	NOP56	O00567	594 aa	Known RBP	12.01	□□□□□ -0.49
CLN3-238	ENST00000569430	DNAJC6	O75061	913 aa		12.01	□□□□□ -0.49
CLN3-238	ENST00000569430	TMEM191B	P0C7N4	346 aa		12.01	□□□□□ -0.49
CLN3-238	ENST00000569430	ETS1	P14921	441 aa		12.01	□□□□□ -0.49
CLN3-238	ENST00000569430	TMCO4	Q5TGY1	634 aa		12.01	□□□□□ -0.49
CLN3-238	ENST00000569430	ARMC3	Q5W041	872 aa		12.01	□□□□□ -0.49
CLN3-238	ENST00000569430	LLGL2	Q6P1M3	1020 aa		12.01	□□□□□ -0.49
CLN3-238	ENST00000569430	TCP10L	Q8TDR4	215 aa		12.01	□□□□□ -0.49
CLN3-238	ENST00000569430	NMD3	Q96D46	503 aa	Known RBP	12.01	□□□□□ -0.49
CLN3-238	ENST00000569430	LRGUK	Q96M69	825 aa		12.01	□□□□□ -0.49
CLN3-238	ENST00000569430	MCEE	Q96PE7	176 aa		12.01	□□□□□ -0.49
CLN3-238	ENST00000569430	C10orf88	Q9H8K7	445 aa		12.01	□□□□□ -0.49
CLN3-238	ENST00000569430	ALS2	Q96Q42	1657 aa		12.01	□□□□□ -0.49
CLN3-238	ENST00000569430	CASQ2	O14958	399 aa	Predicted RBP	12.01	□□□□□ -0.49
CLN3-238	ENST00000569430	TGFB1I1	O43294	461 aa		12.01	□□□□□ -0.49
CLN3-238	ENST00000569430	HNRNPCL1	O60812	293 aa	Known RBP	12.01	□□□□□ -0.49
CLN3-238	ENST00000569430	TAC1	P20366	129 aa		12.01	□□□□□ -0.49
CLN3-238	ENST00000569430	BGN	P21810	368 aa		12.01	□□□□□ -0.49
CLN3-238	ENST00000569430	GEMIN4	P57678	1058 aa	Known RBP	12.01	□□□□□ -0.49
CLN3-238	ENST00000569430	ALCAM	Q13740	583 aa		12.01	□□□□□ -0.49
CLN3-238	ENST00000569430	DBN1	Q16643	649 aa		12.01	□□□□□ -0.49
CLN3-238	ENST00000569430	LRRC74B	Q6ZQY2	392 aa		12.01	□□□□□ -0.49
CLN3-238	ENST00000569430	PCGF5	Q86SE9	256 aa		12.01	□□□□□ -0.49
CLN3-238	ENST00000569430	RNF168	Q8IYW5	571 aa	Predicted RBP	12.01	□□□□□ -0.49
CLN3-238	ENST00000569430	ARHGAP18	Q8N392	663 aa		12.01	□□□□□ -0.49
CLN3-238	ENST00000569430	PPWD1	Q96BP3	646 aa	Known RBP	12.01	□□□□□ -0.49
CLN3-238	ENST00000569430	PPP1R36	Q96LQ0	422 aa		12.01	□□□□□ -0.49
CLN3-238	ENST00000569430	TRIM56	Q9BRZ2	755 aa	Known RBP	12.01	□□□□□ -0.49
CLN3-238	ENST00000569430	TMEM120A	Q9BXJ8	343 aa		12.01	□□□□□ -0.49
CLN3-238	ENST00000569430	ZDHHC18	Q9NUE0	388 aa		12.01	□□□□□ -0.49
CLN3-238	ENST00000569430	GINS2	Q9Y248	185 aa		12.01	□□□□□ -0.49
CLN3-238	ENST00000569430	MTO1	Q9Y2Z2	717 aa	Known RBP	12.01	□□□□□ -0.49
CLN3-238	ENST00000569430	TTLL3	Q9Y4R7	772 aa		12.01	□□□□□ -0.49
CLN3-238	ENST00000569430	STRCP1	A6NGW2	1772 aa		12	□□□□□ -0.49
CLN3-238	ENST00000569430	E2F8	A0AVK6	867 aa		12	□□□□□ -0.49
CLN3-238	ENST00000569430	ECHS1	P30084	290 aa		12	□□□□□ -0.49
CLN3-238	ENST00000569430	CRK	P46108	304 aa		12	□□□□□ -0.49
CLN3-238	ENST00000569430	SH3BGR	P55822	239 aa	Predicted RBP	12	□□□□□ -0.49
CLN3-238	ENST00000569430	PDCD2	Q16342	344 aa	Predicted RBP	12	□□□□□ -0.49
CLN3-238	ENST00000569430	PPP6R3	Q5H9R7	873 aa	Predicted RBP	12	□□□□□ -0.49
CLN3-238	ENST00000569430	WASHC2D	Q5SRD0	308 aa		12	□□□□□ -0.49
CLN3-238	ENST00000569430	RIBC1	Q8N443	379 aa	Predicted RBP	12	□□□□□ -0.49
CLN3-238	ENST00000569430	TRIML2	Q8N7C3	387 aa		12	□□□□□ -0.49
CLN3-238	ENST00000569430	SNRNP27	Q8WVK2	155 aa	Known RBP	12	□□□□□ -0.49
CLN3-238	ENST00000569430	PRPF31	Q8WWY3	499 aa	Known RBP	12	□□□□□ -0.49
CLN3-238	ENST00000569430	POLR3C	Q9BUI4	534 aa	Predicted RBP	12	□□□□□ -0.49
CLN3-238	ENST00000569430	WWP1	Q9H0M0	922 aa		12	□□□□□ -0.49
CLN3-238	ENST00000569430	C12orf65	Q9H3J6	166 aa	Known RBP	12	□□□□□ -0.49
CLN3-238	ENST00000569430	NGRN	Q9NPE2	291 aa	Known RBP	12	□□□□□ -0.49
CLN3-238	ENST00000569430	OLFML3	Q9NRN5	406 aa		12	□□□□□ -0.49

Retrieved 100 of 20,778 RNA–protein pairs in 56.1 ms