RNA–Protein interactions for RNA: ENST00000568488.5

CLK3-223, Transcript of CDC like kinase 3, humanhuman

TSL 3

Gene CLK3, Length 481 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-223ENST00000568488 WASF3Q9UPY6 502 aa17.77■□□□□ 0.44
CLK3-223ENST00000568488 ATG13O75143 517 aa17.76■□□□□ 0.43
CLK3-223ENST00000568488 AKAP3O75969 853 aa17.76■□□□□ 0.43
CLK3-223ENST00000568488 TNK2Q07912 1038 aa17.76■□□□□ 0.43
CLK3-223ENST00000568488 MRPL58Q14197 206 aaKnown RBP17.76■□□□□ 0.43
CLK3-223ENST00000568488 ELF2Q15723 593 aa17.76■□□□□ 0.43
CLK3-223ENST00000568488 ZNF280DQ6N043 979 aa17.76■□□□□ 0.43
CLK3-223ENST00000568488 RNF19BQ6ZMZ0 732 aa17.76■□□□□ 0.43
CLK3-223ENST00000568488 MCPH1Q8NEM0 835 aa17.76■□□□□ 0.43
CLK3-223ENST00000568488 GATA6Q92908 595 aa17.76■□□□□ 0.43
CLK3-223ENST00000568488 SNX14Q9Y5W7 946 aa17.76■□□□□ 0.43
CLK3-223ENST00000568488 SPAG17Q6Q759 2223 aa17.76■□□□□ 0.43
CLK3-223ENST00000568488 PKD1L2Q7Z442 2459 aa17.75■□□□□ 0.43
CLK3-223ENST00000568488 RHOBTB1O94844 696 aa17.75■□□□□ 0.43
CLK3-223ENST00000568488 YARSP54577 528 aaKnown RBP17.75■□□□□ 0.43
CLK3-223ENST00000568488 OSTNP61366 133 aa17.75■□□□□ 0.43
CLK3-223ENST00000568488 ATF7IP2Q5U623 682 aa17.75■□□□□ 0.43
CLK3-223ENST00000568488 KIAA1211LQ6NV74 962 aa17.75■□□□□ 0.43
CLK3-223ENST00000568488 CPLX2Q6PUV4 134 aaKnown RBP17.75■□□□□ 0.43
CLK3-223ENST00000568488 FAM177A1Q8N128 213 aaPredicted RBP17.75■□□□□ 0.43
CLK3-223ENST00000568488 OXER1Q8TDS5 423 aa17.75■□□□□ 0.43
CLK3-223ENST00000568488 BSNDQ8WZ55 320 aa17.75■□□□□ 0.43
CLK3-223ENST00000568488 COL26A1Q96A83 441 aa17.75■□□□□ 0.43
CLK3-223ENST00000568488 TMEM209Q96SK2 561 aa17.75■□□□□ 0.43
CLK3-223ENST00000568488 DUSP15Q9H1R2 295 aaPredicted RBP17.75■□□□□ 0.43
CLK3-223ENST00000568488 SLC38A7Q9NVC3 462 aa17.75■□□□□ 0.43
CLK3-223ENST00000568488 POLR3BQ9NW08 1133 aaPredicted RBP17.75■□□□□ 0.43
CLK3-223ENST00000568488 YIPF1Q9Y548 306 aa17.75■□□□□ 0.43
CLK3-223ENST00000568488 DCLK1O15075 740 aa17.74■□□□□ 0.43
CLK3-223ENST00000568488 XRCC6P12956 609 aaKnown RBP eCLIP17.74■□□□□ 0.43
CLK3-223ENST00000568488 CEACAM1P13688 526 aa17.74■□□□□ 0.43
CLK3-223ENST00000568488 MARCKSP29966 332 aaPredicted RBP17.74■□□□□ 0.43
CLK3-223ENST00000568488 EPHB3P54753 998 aa17.74■□□□□ 0.43
CLK3-223ENST00000568488 STK3Q13188 491 aa17.74■□□□□ 0.43
CLK3-223ENST00000568488 NT5DC1Q5TFE4 455 aa17.74■□□□□ 0.43
CLK3-223ENST00000568488 APBB1IPQ7Z5R6 666 aaPredicted RBP17.74■□□□□ 0.43
CLK3-223ENST00000568488 CEP120Q8N960 986 aa17.74■□□□□ 0.43
CLK3-223ENST00000568488 APPL2Q8NEU8 664 aa17.74■□□□□ 0.43
CLK3-223ENST00000568488 PGLYRP2Q96PD5 576 aa17.74■□□□□ 0.43
CLK3-223ENST00000568488 HHIPQ96QV1 700 aa17.74■□□□□ 0.43
CLK3-223ENST00000568488 LARP6Q9BRS8 491 aaKnown RBP17.74■□□□□ 0.43
CLK3-223ENST00000568488 LRRC3Q9BY71 257 aa17.74■□□□□ 0.43
CLK3-223ENST00000568488 CCDC113Q9H0I3 377 aa17.74■□□□□ 0.43
CLK3-223ENST00000568488 ATXN3LQ9H3M9 355 aa17.74■□□□□ 0.43
CLK3-223ENST00000568488 TTC12Q9H892 705 aaPredicted RBP17.74■□□□□ 0.43
CLK3-223ENST00000568488 MAFFQ9ULX9 164 aa17.74■□□□□ 0.43
CLK3-223ENST00000568488 MCM4P33991 863 aa17.73■□□□□ 0.43
CLK3-223ENST00000568488 TXKP42681 527 aa17.73■□□□□ 0.43
CLK3-223ENST00000568488 EVCP57679 992 aa17.73■□□□□ 0.43
CLK3-223ENST00000568488 GRSF1Q12849 480 aaKnown RBP eCLIP17.73■□□□□ 0.43
CLK3-223ENST00000568488 PLD1Q13393 1074 aa17.73■□□□□ 0.43
CLK3-223ENST00000568488 CALCRLQ16602 461 aa17.73■□□□□ 0.43
CLK3-223ENST00000568488 UAP1L1Q3KQV9 507 aa17.73■□□□□ 0.43
CLK3-223ENST00000568488 ITPRIPL2Q3MIP1 535 aa17.73■□□□□ 0.43
CLK3-223ENST00000568488 GPR158Q5T848 1215 aa17.73■□□□□ 0.43
CLK3-223ENST00000568488 TMC8Q8IU68 726 aa17.73■□□□□ 0.43
CLK3-223ENST00000568488 CAMKK1Q8N5S9 505 aa17.73■□□□□ 0.43
CLK3-223ENST00000568488 DDX12PQ92771 950 aa17.73■□□□□ 0.43
CLK3-223ENST00000568488 ZMAT2Q96NC0 199 aaKnown RBP17.73■□□□□ 0.43
CLK3-223ENST00000568488 KIFC3Q9BVG8 833 aa17.73■□□□□ 0.43
CLK3-223ENST00000568488 CCDC94Q9BW85 323 aaPredicted RBP17.73■□□□□ 0.43
CLK3-223ENST00000568488 TMEM9BQ9NQ34 198 aa17.73■□□□□ 0.43
CLK3-223ENST00000568488 TOPORSQ9NS56 1045 aaPredicted RBP17.73■□□□□ 0.43
CLK3-223ENST00000568488 GJB4Q9NTQ9 266 aa17.73■□□□□ 0.43
CLK3-223ENST00000568488 AKAP13Q12802 2813 aa17.73■□□□□ 0.43
CLK3-223ENST00000568488 WDFY3Q8IZQ1 3526 aa17.73■□□□□ 0.43
CLK3-223ENST00000568488 LNP1A1A4G5 178 aa17.72■□□□□ 0.43
CLK3-223ENST00000568488 BCLAF3A2AJT9 711 aaKnown RBP17.72■□□□□ 0.43
CLK3-223ENST00000568488 FAM205CA6NFA0 338 aa17.72■□□□□ 0.43
CLK3-223ENST00000568488 PSMA5P28066 241 aa17.72■□□□□ 0.43
CLK3-223ENST00000568488 GBP1P32455 592 aa17.72■□□□□ 0.43
CLK3-223ENST00000568488 NAMPTP43490 491 aa17.72■□□□□ 0.43
CLK3-223ENST00000568488 ALDH1A3P47895 512 aa17.72■□□□□ 0.43
CLK3-223ENST00000568488 PLCB2Q00722 1185 aa17.72■□□□□ 0.43
CLK3-223ENST00000568488 DUSP4Q13115 394 aa17.72■□□□□ 0.43
CLK3-223ENST00000568488 PTPAQ15257 358 aa17.72■□□□□ 0.43
CLK3-223ENST00000568488 EARS2Q5JPH6 523 aaKnown RBP17.72■□□□□ 0.43
CLK3-223ENST00000568488 BPIFB1Q8TDL5 484 aa17.72■□□□□ 0.43
CLK3-223ENST00000568488 KCNB2Q92953 911 aa17.72■□□□□ 0.43
CLK3-223ENST00000568488 C18orf25Q96B23 403 aaPredicted RBP17.72■□□□□ 0.43
CLK3-223ENST00000568488 KIF12Q96FN5 646 aa17.72■□□□□ 0.43
CLK3-223ENST00000568488 SUSD3Q96L08 255 aa17.72■□□□□ 0.43
CLK3-223ENST00000568488 TBC1D32Q96NH3 1257 aa17.72■□□□□ 0.43
CLK3-223ENST00000568488 POLD4Q9HCU8 107 aa17.72■□□□□ 0.43
CLK3-223ENST00000568488 THG1LQ9NWX6 298 aaKnown RBP17.72■□□□□ 0.43
CLK3-223ENST00000568488 DSPP15924 2871 aaKnown RBP17.72■□□□□ 0.43
CLK3-223ENST00000568488 NBEAQ8NFP9 2946 aa17.71■□□□□ 0.43
CLK3-223ENST00000568488 TRIP11Q15643 1979 aa17.71■□□□□ 0.43
CLK3-223ENST00000568488 KHNYNO15037 678 aaKnown RBP17.71■□□□□ 0.43
CLK3-223ENST00000568488 RNF40O75150 1001 aa17.71■□□□□ 0.43
CLK3-223ENST00000568488 OR4Q2P0C623 313 aa17.71■□□□□ 0.43
CLK3-223ENST00000568488 XBP1P17861 261 aa17.71■□□□□ 0.43
CLK3-223ENST00000568488 CSRP1P21291 193 aaKnown RBP17.71■□□□□ 0.43
CLK3-223ENST00000568488 RPL9P32969 192 aaKnown RBP17.71■□□□□ 0.43
CLK3-223ENST00000568488 CACNB1Q02641 598 aaPredicted RBP17.71■□□□□ 0.43
CLK3-223ENST00000568488 ARHGAP15Q53QZ3 475 aa17.71■□□□□ 0.43
CLK3-223ENST00000568488 FSTL4Q6MZW2 842 aa17.71■□□□□ 0.43
CLK3-223ENST00000568488 ALKAL1Q6UXT8 129 aa17.71■□□□□ 0.43
CLK3-223ENST00000568488 DEFB124Q8NES8 71 aa17.71■□□□□ 0.43
CLK3-223ENST00000568488 MKNK1Q9BUB5 465 aa17.71■□□□□ 0.43
Retrieved 100 of 20,778 RNA–protein pairs in 16.5 ms