RNA–Protein interactions for RNA: ENST00000567963.6

CLN3-229, Transcript of CLN3, battenin, humanhuman

TSL 5 BASIC

Gene CLN3, Length 1,452 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-229ENST00000567963 GUCY2FP51841 1108 aa17.47■□□□□ 0.39
CLN3-229ENST00000567963 TWF1Q12792 350 aa17.47■□□□□ 0.39
CLN3-229ENST00000567963 CYP4A22Q5TCH4 519 aa17.47■□□□□ 0.39
CLN3-229ENST00000567963 SPATA1Q5VX52 437 aa17.47■□□□□ 0.39
CLN3-229ENST00000567963 IQCEQ6IPM2 695 aa17.47■□□□□ 0.39
CLN3-229ENST00000567963 PDZD4Q76G19 769 aaPredicted RBP17.47■□□□□ 0.39
CLN3-229ENST00000567963 MAP4K3Q8IVH8 894 aa17.47■□□□□ 0.39
CLN3-229ENST00000567963 CD302Q8IX05 232 aa17.47■□□□□ 0.39
CLN3-229ENST00000567963 ELSPBP1Q96BH3 223 aa17.47■□□□□ 0.39
CLN3-229ENST00000567963 EPSTI1Q96J88 318 aa17.47■□□□□ 0.39
CLN3-229ENST00000567963 MTF2Q9Y483 593 aaPredicted RBP17.47■□□□□ 0.39
CLN3-229ENST00000567963 CLIC4Q9Y696 253 aa17.47■□□□□ 0.39
CLN3-229ENST00000567963 COL4A3Q01955 1670 aa17.47■□□□□ 0.39
CLN3-229ENST00000567963 MIA3Q5JRA6 1907 aa17.46■□□□□ 0.39
CLN3-229ENST00000567963 PDCP20941 246 aa17.46■□□□□ 0.39
CLN3-229ENST00000567963 PTPAQ15257 358 aa17.46■□□□□ 0.39
CLN3-229ENST00000567963 ZC2HC1CQ53FD0 456 aaPredicted RBP17.46■□□□□ 0.39
CLN3-229ENST00000567963 JADE1Q6IE81 842 aa17.46■□□□□ 0.39
CLN3-229ENST00000567963 DSTYKQ6XUX3 929 aa17.46■□□□□ 0.39
CLN3-229ENST00000567963 USP49Q70CQ1 688 aa17.46■□□□□ 0.39
CLN3-229ENST00000567963 USP37Q86T82 979 aa17.46■□□□□ 0.39
CLN3-229ENST00000567963 HS6ST3Q8IZP7 471 aa17.46■□□□□ 0.39
CLN3-229ENST00000567963 FAM212AQ96EL1 285 aa17.46■□□□□ 0.39
CLN3-229ENST00000567963 OSBPL6Q9BZF3 934 aa17.46■□□□□ 0.39
CLN3-229ENST00000567963 ST6GALNAC4Q9H4F1 302 aa17.46■□□□□ 0.39
CLN3-229ENST00000567963 RIF1Q5UIP0 2472 aaKnown RBP17.46■□□□□ 0.38
CLN3-229ENST00000567963 ANKRD63C9JTQ0 380 aa17.45■□□□□ 0.38
CLN3-229ENST00000567963 NRG2O14511 850 aaPredicted RBP17.45■□□□□ 0.38
CLN3-229ENST00000567963 PPEF2O14830 753 aa17.45■□□□□ 0.38
CLN3-229ENST00000567963 VNN2O95498 520 aa17.45■□□□□ 0.38
CLN3-229ENST00000567963 OR4Q2P0C623 313 aa17.45■□□□□ 0.38
CLN3-229ENST00000567963 CD72P21854 359 aa17.45■□□□□ 0.38
CLN3-229ENST00000567963 FCARP24071 287 aa17.45■□□□□ 0.38
CLN3-229ENST00000567963 LILRA4P59901 499 aa17.45■□□□□ 0.38
CLN3-229ENST00000567963 UBXN2BQ14CS0 331 aa17.45■□□□□ 0.38
CLN3-229ENST00000567963 FAM78AQ5JUQ0 283 aa17.45■□□□□ 0.38
CLN3-229ENST00000567963 ADSSL1Q8N142 457 aa17.45■□□□□ 0.38
CLN3-229ENST00000567963 KRI1Q8N9T8 703 aaKnown RBP17.45■□□□□ 0.38
CLN3-229ENST00000567963 ZSWIM3Q96MP5 696 aa17.45■□□□□ 0.38
CLN3-229ENST00000567963 ASB16Q96NS5 453 aa17.45■□□□□ 0.38
CLN3-229ENST00000567963 SEMA4AQ9H3S1 761 aa17.45■□□□□ 0.38
CLN3-229ENST00000567963 ZFP14Q9HCL3 533 aa17.45■□□□□ 0.38
CLN3-229ENST00000567963 CACNA1IQ9P0X4 2223 aa17.45■□□□□ 0.38
CLN3-229ENST00000567963 WDR87Q6ZQQ6 2873 aa17.45■□□□□ 0.38
CLN3-229ENST00000567963 OR6C75A6NL08 312 aa17.44■□□□□ 0.38
CLN3-229ENST00000567963 FAM170BA6NMN3 283 aa17.44■□□□□ 0.38
CLN3-229ENST00000567963 MOSPD3O75425 235 aa17.44■□□□□ 0.38
CLN3-229ENST00000567963 SP9P0CG40 484 aa17.44■□□□□ 0.38
CLN3-229ENST00000567963 TYMPP19971 482 aa17.44■□□□□ 0.38
CLN3-229ENST00000567963 ACOT2P49753 483 aa17.44■□□□□ 0.38
CLN3-229ENST00000567963 EPHA5P54756 1037 aa17.44■□□□□ 0.38
CLN3-229ENST00000567963 GPR17Q13304 367 aa17.44■□□□□ 0.38
CLN3-229ENST00000567963 OVOS1Q6IE37 1185 aa17.44■□□□□ 0.38
CLN3-229ENST00000567963 ZNF720Q7Z2F6 126 aa17.44■□□□□ 0.38
CLN3-229ENST00000567963 LEMD2Q8NC56 503 aa17.44■□□□□ 0.38
CLN3-229ENST00000567963 PGLYRP2Q96PD5 576 aa17.44■□□□□ 0.38
CLN3-229ENST00000567963 BCO2Q9BYV7 579 aa17.44■□□□□ 0.38
CLN3-229ENST00000567963 LTB4R2Q9NPC1 389 aa17.44■□□□□ 0.38
CLN3-229ENST00000567963 CCDC39Q9UFE4 941 aa17.44■□□□□ 0.38
CLN3-229ENST00000567963 FBXO2Q9UK22 296 aaPredicted RBP17.44■□□□□ 0.38
CLN3-229ENST00000567963 DERAQ9Y315 318 aa17.44■□□□□ 0.38
CLN3-229ENST00000567963 SRPRBQ9Y5M8 271 aaKnown RBP17.44■□□□□ 0.38
CLN3-229ENST00000567963 STYXL1Q9Y6J8 313 aa17.44■□□□□ 0.38
CLN3-229ENST00000567963 FRYLO94915 3013 aa17.44■□□□□ 0.38
CLN3-229ENST00000567963 FAM186AA6NE01 2351 aa17.44■□□□□ 0.38
CLN3-229ENST00000567963 TISP43B9A030 160 aa17.44■□□□□ 0.38
CLN3-229ENST00000567963 PIRO00625 290 aa17.44■□□□□ 0.38
CLN3-229ENST00000567963 NFICP08651 508 aa17.44■□□□□ 0.38
CLN3-229ENST00000567963 MYL4P12829 197 aa17.44■□□□□ 0.38
CLN3-229ENST00000567963 PAX3P23760 479 aa17.44■□□□□ 0.38
CLN3-229ENST00000567963 DUSP4Q13115 394 aa17.44■□□□□ 0.38
CLN3-229ENST00000567963 C9orf57Q5W0N0 161 aa17.44■□□□□ 0.38
CLN3-229ENST00000567963 ADALQ6DHV7 355 aa17.44■□□□□ 0.38
CLN3-229ENST00000567963 SLFN12LQ6IEE8 588 aa17.44■□□□□ 0.38
CLN3-229ENST00000567963 TPRG1Q6ZUI0 275 aa17.44■□□□□ 0.38
CLN3-229ENST00000567963 DYMQ7RTS9 669 aa17.44■□□□□ 0.38
CLN3-229ENST00000567963 MAML2Q8IZL2 1156 aaPredicted RBP17.44■□□□□ 0.38
CLN3-229ENST00000567963 SENP8Q96LD8 212 aa17.44■□□□□ 0.38
CLN3-229ENST00000567963 NELL2Q99435 816 aa17.44■□□□□ 0.38
CLN3-229ENST00000567963 CRISPLD1Q9H336 500 aa17.44■□□□□ 0.38
CLN3-229ENST00000567963 ASB7Q9H672 318 aa17.44■□□□□ 0.38
CLN3-229ENST00000567963 ASAH2Q9NR71 780 aa17.44■□□□□ 0.38
CLN3-229ENST00000567963 HEBP1Q9NRV9 189 aa17.44■□□□□ 0.38
CLN3-229ENST00000567963 STK17AQ9UEE5 414 aa17.44■□□□□ 0.38
CLN3-229ENST00000567963 YIPF1Q9Y548 306 aa17.44■□□□□ 0.38
CLN3-229ENST00000567963 R4GN57 208 aa17.44■□□□□ 0.38
CLN3-229ENST00000567963 ANK1P16157 1881 aa17.43■□□□□ 0.38
CLN3-229ENST00000567963 ANO9A1A5B4 782 aa17.43■□□□□ 0.38
CLN3-229ENST00000567963 SPTLC1O15269 473 aa17.43■□□□□ 0.38
CLN3-229ENST00000567963 LMNAP02545 664 aaKnown RBP17.43■□□□□ 0.38
CLN3-229ENST00000567963 GJA1P17302 382 aa17.43■□□□□ 0.38
CLN3-229ENST00000567963 MYBPC2Q14324 1141 aa17.43■□□□□ 0.38
CLN3-229ENST00000567963 GRM2Q14416 872 aa17.43■□□□□ 0.38
CLN3-229ENST00000567963 TMEM132DQ14C87 1099 aa17.43■□□□□ 0.38
CLN3-229ENST00000567963 CENPPQ6IPU0 288 aa17.43■□□□□ 0.38
CLN3-229ENST00000567963 SMARCD2Q92925 531 aa17.43■□□□□ 0.38
CLN3-229ENST00000567963 CLIC6Q96NY7 704 aa17.43■□□□□ 0.38
CLN3-229ENST00000567963 TRMT61BQ9BVS5 477 aaKnown RBP17.43■□□□□ 0.38
CLN3-229ENST00000567963 LRRC3Q9BY71 257 aa17.43■□□□□ 0.38
CLN3-229ENST00000567963 AGO2Q9UKV8 859 aaKnown RBP17.43■□□□□ 0.38
Retrieved 100 of 20,778 RNA–protein pairs in 46.2 ms