RNA–Protein interactions for RNA: ENST00000566808.2

CDH3-205, Transcript of cadherin 3, humanhuman

TSL 5

Gene CDH3, Length 573 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDH3-205ENST00000566808 CCDC113Q9H0I3 377 aa18.47■□□□□ 0.55
CDH3-205ENST00000566808 GTSE1Q9NYZ3 720 aa18.47■□□□□ 0.55
CDH3-205ENST00000566808 ASCC3Q8N3C0 2202 aaKnown RBP18.47■□□□□ 0.55
CDH3-205ENST00000566808 CACNA1EQ15878 2313 aa18.46■□□□□ 0.55
CDH3-205ENST00000566808 C4orf47A7E2U8 309 aa18.46■□□□□ 0.55
CDH3-205ENST00000566808 PODXLO00592 558 aa18.46■□□□□ 0.55
CDH3-205ENST00000566808 CEACAM1P13688 526 aa18.46■□□□□ 0.55
CDH3-205ENST00000566808 KARSQ15046 597 aaKnown RBP18.46■□□□□ 0.55
CDH3-205ENST00000566808 PLK5Q496M5 336 aa18.46■□□□□ 0.55
CDH3-205ENST00000566808 PKN3Q6P5Z2 889 aa18.46■□□□□ 0.55
CDH3-205ENST00000566808 APBB1IPQ7Z5R6 666 aaPredicted RBP18.46■□□□□ 0.55
CDH3-205ENST00000566808 PIGOQ8TEQ8 1089 aa18.46■□□□□ 0.55
CDH3-205ENST00000566808 AIFM3Q96NN9 605 aa18.46■□□□□ 0.55
CDH3-205ENST00000566808 SCNM1Q9BWG6 230 aa18.46■□□□□ 0.55
CDH3-205ENST00000566808 SLC38A7Q9NVC3 462 aa18.46■□□□□ 0.55
CDH3-205ENST00000566808 SLC8A2Q9UPR5 921 aa18.46■□□□□ 0.55
CDH3-205ENST00000566808 YIPF1Q9Y548 306 aa18.46■□□□□ 0.55
CDH3-205ENST00000566808 KIAA1549LQ6ZVL6 1849 aa18.46■□□□□ 0.55
CDH3-205ENST00000566808 LAMA5O15230 3695 aa18.45■□□□□ 0.54
CDH3-205ENST00000566808 A0A1W2PRU2 124 aa18.45■□□□□ 0.54
CDH3-205ENST00000566808 LNP1A1A4G5 178 aa18.45■□□□□ 0.54
CDH3-205ENST00000566808 CPLX1O14810 134 aa18.45■□□□□ 0.54
CDH3-205ENST00000566808 ATG13O75143 517 aa18.45■□□□□ 0.54
CDH3-205ENST00000566808 EDN1P05305 212 aa18.45■□□□□ 0.54
CDH3-205ENST00000566808 CSRP1P21291 193 aaKnown RBP18.45■□□□□ 0.54
CDH3-205ENST00000566808 PLCB2Q00722 1185 aa18.45■□□□□ 0.54
CDH3-205ENST00000566808 SOX4Q06945 474 aaPredicted RBP18.45■□□□□ 0.54
CDH3-205ENST00000566808 PLD1Q13393 1074 aa18.45■□□□□ 0.54
CDH3-205ENST00000566808 MAEAQ7L5Y9 396 aa18.45■□□□□ 0.54
CDH3-205ENST00000566808 TMC8Q8IU68 726 aa18.45■□□□□ 0.54
CDH3-205ENST00000566808 ARID3BQ8IVW6 561 aaPredicted RBP18.45■□□□□ 0.54
CDH3-205ENST00000566808 TTC8Q8TAM2 541 aa18.45■□□□□ 0.54
CDH3-205ENST00000566808 KCNB2Q92953 911 aa18.45■□□□□ 0.54
CDH3-205ENST00000566808 COL26A1Q96A83 441 aa18.45■□□□□ 0.54
CDH3-205ENST00000566808 ZFYVE19Q96K21 471 aa18.45■□□□□ 0.54
CDH3-205ENST00000566808 TOPORSQ9NS56 1045 aaPredicted RBP18.45■□□□□ 0.54
CDH3-205ENST00000566808 OBP2AQ9NY56 170 aa18.45■□□□□ 0.54
CDH3-205ENST00000566808 KCNJ14Q9UNX9 436 aa18.45■□□□□ 0.54
CDH3-205ENST00000566808 NUB1Q9Y5A7 615 aa18.45■□□□□ 0.54
CDH3-205ENST00000566808 SMIM28A0A1B0GU29 152 aa18.44■□□□□ 0.54
CDH3-205ENST00000566808 DPYSL4O14531 572 aa18.44■□□□□ 0.54
CDH3-205ENST00000566808 XRCC6P12956 609 aaKnown RBP eCLIP18.44■□□□□ 0.54
CDH3-205ENST00000566808 CPB1P15086 417 aa18.44■□□□□ 0.54
CDH3-205ENST00000566808 BMP2KLQ5H9B9 411 aa18.44■□□□□ 0.54
CDH3-205ENST00000566808 PIK3AP1Q6ZUJ8 805 aa18.44■□□□□ 0.54
CDH3-205ENST00000566808 CAMKK1Q8N5S9 505 aa18.44■□□□□ 0.54
CDH3-205ENST00000566808 DUSP15Q9H1R2 295 aaPredicted RBP18.44■□□□□ 0.54
CDH3-205ENST00000566808 PCDHA12Q9UN75 941 aa18.44■□□□□ 0.54
CDH3-205ENST00000566808 USP20Q9Y2K6 914 aa18.44■□□□□ 0.54
CDH3-205ENST00000566808 MYO16Q9Y6X6 1858 aa18.43■□□□□ 0.54
CDH3-205ENST00000566808 RHOBTB1O94844 696 aa18.43■□□□□ 0.54
CDH3-205ENST00000566808 CAVIN2O95810 425 aa18.43■□□□□ 0.54
CDH3-205ENST00000566808 TOP3BO95985 862 aaKnown RBP18.43■□□□□ 0.54
CDH3-205ENST00000566808 LIG1P18858 919 aa18.43■□□□□ 0.54
CDH3-205ENST00000566808 NAMPTP43490 491 aa18.43■□□□□ 0.54
CDH3-205ENST00000566808 YARSP54577 528 aaKnown RBP18.43■□□□□ 0.54
CDH3-205ENST00000566808 CREB5Q02930 508 aa18.43■□□□□ 0.54
CDH3-205ENST00000566808 ITPRIPL2Q3MIP1 535 aa18.43■□□□□ 0.54
CDH3-205ENST00000566808 STXBP5Q5T5C0 1151 aa18.43■□□□□ 0.54
CDH3-205ENST00000566808 CPLX2Q6PUV4 134 aaKnown RBP18.43■□□□□ 0.54
CDH3-205ENST00000566808 BEST2Q8NFU1 509 aa18.43■□□□□ 0.54
CDH3-205ENST00000566808 DEPTORQ8TB45 409 aa18.43■□□□□ 0.54
CDH3-205ENST00000566808 BSNDQ8WZ55 320 aa18.43■□□□□ 0.54
CDH3-205ENST00000566808 SUSD3Q96L08 255 aa18.43■□□□□ 0.54
CDH3-205ENST00000566808 TMEM209Q96SK2 561 aa18.43■□□□□ 0.54
CDH3-205ENST00000566808 LRRC3Q9BY71 257 aa18.43■□□□□ 0.54
CDH3-205ENST00000566808 TMEM9BQ9NQ34 198 aa18.43■□□□□ 0.54
CDH3-205ENST00000566808 NEUROG3Q9Y4Z2 214 aa18.43■□□□□ 0.54
CDH3-205ENST00000566808 SNX14Q9Y5W7 946 aa18.43■□□□□ 0.54
CDH3-205ENST00000566808 THADAQ6YHU6 1953 aa18.42■□□□□ 0.54
CDH3-205ENST00000566808 BCLAF3A2AJT9 711 aaKnown RBP18.42■□□□□ 0.54
CDH3-205ENST00000566808 PCNX2A6NKB5 2137 aa18.42■□□□□ 0.54
CDH3-205ENST00000566808 TAF4O00268 1085 aa18.42■□□□□ 0.54
CDH3-205ENST00000566808 ATP2B1P20020 1258 aa18.42■□□□□ 0.54
CDH3-205ENST00000566808 EFNA5P52803 228 aa18.42■□□□□ 0.54
CDH3-205ENST00000566808 TNK2Q07912 1038 aa18.42■□□□□ 0.54
CDH3-205ENST00000566808 PPP2R5AQ15172 486 aa18.42■□□□□ 0.54
CDH3-205ENST00000566808 PTPAQ15257 358 aa18.42■□□□□ 0.54
CDH3-205ENST00000566808 XKR4Q5GH76 650 aa18.42■□□□□ 0.54
CDH3-205ENST00000566808 ATF7IP2Q5U623 682 aa18.42■□□□□ 0.54
CDH3-205ENST00000566808 RNF19BQ6ZMZ0 732 aa18.42■□□□□ 0.54
CDH3-205ENST00000566808 APPL2Q8NEU8 664 aa18.42■□□□□ 0.54
CDH3-205ENST00000566808 LRRC3BQ96PB8 259 aa18.42■□□□□ 0.54
CDH3-205ENST00000566808 MKNK1Q9BUB5 465 aa18.42■□□□□ 0.54
CDH3-205ENST00000566808 CCDC94Q9BW85 323 aaPredicted RBP18.42■□□□□ 0.54
CDH3-205ENST00000566808 TPCN1Q9ULQ1 816 aa18.42■□□□□ 0.54
CDH3-205ENST00000566808 ABCA7Q8IZY2 2146 aa18.41■□□□□ 0.54
CDH3-205ENST00000566808 ADAMTS20P59510 1910 aa18.41■□□□□ 0.54
CDH3-205ENST00000566808 ZNF638Q14966 1978 aaKnown RBP18.41■□□□□ 0.54
CDH3-205ENST00000566808 RPL9P32969 192 aaKnown RBP18.41■□□□□ 0.54
CDH3-205ENST00000566808 GRM5P41594 1212 aa18.41■□□□□ 0.54
CDH3-205ENST00000566808 MCM2P49736 904 aa18.41■□□□□ 0.54
CDH3-205ENST00000566808 EPHB3P54753 998 aa18.41■□□□□ 0.54
CDH3-205ENST00000566808 GRSF1Q12849 480 aaKnown RBP eCLIP18.41■□□□□ 0.54
CDH3-205ENST00000566808 TMEM196Q5HYL7 178 aa18.41■□□□□ 0.54
CDH3-205ENST00000566808 BPIFB1Q8TDL5 484 aa18.41■□□□□ 0.54
CDH3-205ENST00000566808 HHIPQ96QV1 700 aa18.41■□□□□ 0.54
CDH3-205ENST00000566808 DNAJC25Q9H1X3 360 aa18.41■□□□□ 0.54
CDH3-205ENST00000566808 TTC12Q9H892 705 aaPredicted RBP18.41■□□□□ 0.54
CDH3-205ENST00000566808 MAST4O15021 2626 aa18.4■□□□□ 0.54
Retrieved 100 of 20,778 RNA–protein pairs in 21.5 ms