RNA–Protein interactions for RNA: ENST00000566126.5

CLK3-217, Transcript of CDC like kinase 3, humanhuman

TSL 5

Gene CLK3, Length 732 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-217ENST00000566126 SLC27A2O14975 620 aa18.34■□□□□ 0.53
CLK3-217ENST00000566126 TRAPPC3O43617 180 aa18.34■□□□□ 0.53
CLK3-217ENST00000566126 DKC1O60832 514 aaKnown RBP eCLIP18.34■□□□□ 0.53
CLK3-217ENST00000566126 P4HBP07237 508 aaKnown RBP18.34■□□□□ 0.53
CLK3-217ENST00000566126 ADD1P35611 737 aaKnown RBP18.34■□□□□ 0.53
CLK3-217ENST00000566126 MRPL58Q14197 206 aaKnown RBP18.34■□□□□ 0.53
CLK3-217ENST00000566126 ZNF423Q2M1K9 1284 aa18.34■□□□□ 0.53
CLK3-217ENST00000566126 XKR9Q5GH70 373 aa18.34■□□□□ 0.53
CLK3-217ENST00000566126 LARP1BQ659C4 914 aaKnown RBP18.34■□□□□ 0.53
CLK3-217ENST00000566126 C4orf19Q8IY42 314 aa18.34■□□□□ 0.53
CLK3-217ENST00000566126 BICD2Q8TD16 824 aa18.34■□□□□ 0.53
CLK3-217ENST00000566126 CRELD1Q96HD1 420 aa18.34■□□□□ 0.53
CLK3-217ENST00000566126 PPP1R10Q96QC0 940 aaKnown RBP18.34■□□□□ 0.53
CLK3-217ENST00000566126 FBRSL1Q9HCM7 1045 aaKnown RBP18.34■□□□□ 0.53
CLK3-217ENST00000566126 OBP2AQ9NY56 170 aa18.34■□□□□ 0.53
CLK3-217ENST00000566126 VAV3Q9UKW4 847 aa18.34■□□□□ 0.53
CLK3-217ENST00000566126 MYO18BQ8IUG5 2567 aa18.34■□□□□ 0.53
CLK3-217ENST00000566126 DPYSL4O14531 572 aa18.33■□□□□ 0.52
CLK3-217ENST00000566126 PRAMEF12O95522 483 aa18.33■□□□□ 0.52
CLK3-217ENST00000566126 ENGP17813 658 aa18.33■□□□□ 0.52
CLK3-217ENST00000566126 GLRA2P23416 452 aa18.33■□□□□ 0.52
CLK3-217ENST00000566126 ARL2P36404 184 aa18.33■□□□□ 0.52
CLK3-217ENST00000566126 DGKEP52429 567 aa18.33■□□□□ 0.52
CLK3-217ENST00000566126 PLCB2Q00722 1185 aa18.33■□□□□ 0.52
CLK3-217ENST00000566126 PPP2R5CQ13362 524 aa18.33■□□□□ 0.52
CLK3-217ENST00000566126 GLRA4Q5JXX5 417 aa18.33■□□□□ 0.52
CLK3-217ENST00000566126 CCNI2Q6ZMN8 369 aaPredicted RBP18.33■□□□□ 0.52
CLK3-217ENST00000566126 SYT13Q7L8C5 426 aa18.33■□□□□ 0.52
CLK3-217ENST00000566126 LURAP1LQ8IV03 231 aa18.33■□□□□ 0.52
CLK3-217ENST00000566126 LXNQ9BS40 222 aa18.33■□□□□ 0.52
CLK3-217ENST00000566126 PDZD7Q9H5P4 517 aa18.33■□□□□ 0.52
CLK3-217ENST00000566126 AFF4Q9UHB7 1163 aaKnown RBP18.33■□□□□ 0.52
CLK3-217ENST00000566126 OTOL1A6NHN0 477 aaPredicted RBP18.32■□□□□ 0.52
CLK3-217ENST00000566126 DHPSP49366 369 aaPredicted RBP18.32■□□□□ 0.52
CLK3-217ENST00000566126 DMC1Q14565 340 aa18.32■□□□□ 0.52
CLK3-217ENST00000566126 TTC22Q5TAA0 569 aa18.32■□□□□ 0.52
CLK3-217ENST00000566126 PPP4R3CPQ6ZMV5 832 aa18.32■□□□□ 0.52
CLK3-217ENST00000566126 C11orf74Q86VG3 221 aa18.32■□□□□ 0.52
CLK3-217ENST00000566126 NOSTRINQ8IVI9 506 aa18.32■□□□□ 0.52
CLK3-217ENST00000566126 RPLP0P6Q8NHW5 317 aa18.32■□□□□ 0.52
CLK3-217ENST00000566126 BPIFB1Q8TDL5 484 aa18.32■□□□□ 0.52
CLK3-217ENST00000566126 TCEANC2Q96MN5 208 aa18.32■□□□□ 0.52
CLK3-217ENST00000566126 NUSAP1Q9BXS6 441 aaKnown RBP18.32■□□□□ 0.52
CLK3-217ENST00000566126 TPSD1Q9BZJ3 242 aa18.32■□□□□ 0.52
CLK3-217ENST00000566126 DNAJC25Q9H1X3 360 aa18.32■□□□□ 0.52
CLK3-217ENST00000566126 HPS4Q9NQG7 708 aa18.32■□□□□ 0.52
CLK3-217ENST00000566126 MBD1Q9UIS9 605 aaPredicted RBP18.32■□□□□ 0.52
CLK3-217ENST00000566126 PTPRBP23467 1997 aa18.31■□□□□ 0.52
CLK3-217ENST00000566126 OTUD6AQ7L8S5 288 aa18.31■□□□□ 0.52
CLK3-217ENST00000566126 DAGLBQ8NCG7 672 aa18.31■□□□□ 0.52
CLK3-217ENST00000566126 UROC1Q96N76 676 aa18.31■□□□□ 0.52
CLK3-217ENST00000566126 TMEM74BQ9NUR3 256 aa18.31■□□□□ 0.52
CLK3-217ENST00000566126 RGL1Q9NZL6 768 aa18.31■□□□□ 0.52
CLK3-217ENST00000566126 YIPF1Q9Y548 306 aa18.31■□□□□ 0.52
CLK3-217ENST00000566126 H7C4K7 107 aa18.3■□□□□ 0.52
CLK3-217ENST00000566126 SOX4Q06945 474 aaPredicted RBP18.3■□□□□ 0.52
CLK3-217ENST00000566126 PTPAQ15257 358 aa18.3■□□□□ 0.52
CLK3-217ENST00000566126 USP39Q53GS9 565 aaKnown RBP18.3■□□□□ 0.52
CLK3-217ENST00000566126 NAIF1Q69YI7 327 aaPredicted RBP18.3■□□□□ 0.52
CLK3-217ENST00000566126 RNF19BQ6ZMZ0 732 aa18.3■□□□□ 0.52
CLK3-217ENST00000566126 GAREM2Q75VX8 874 aa18.3■□□□□ 0.52
CLK3-217ENST00000566126 ADAMTS14Q8WXS8 1223 aa18.3■□□□□ 0.52
CLK3-217ENST00000566126 SLC39A7Q92504 469 aa18.3■□□□□ 0.52
CLK3-217ENST00000566126 EZH1Q92800 747 aaPredicted RBP18.3■□□□□ 0.52
CLK3-217ENST00000566126 PRIMPOLQ96LW4 560 aa18.3■□□□□ 0.52
CLK3-217ENST00000566126 UBL7Q96S82 380 aaPredicted RBP18.3■□□□□ 0.52
CLK3-217ENST00000566126 FAM83CQ9BQN1 747 aa18.3■□□□□ 0.52
CLK3-217ENST00000566126 MAFFQ9ULX9 164 aa18.3■□□□□ 0.52
CLK3-217ENST00000566126 GDAQ9Y2T3 454 aa18.3■□□□□ 0.52
CLK3-217ENST00000566126 KLF18A0A0U1RQI7 1052 aa18.29■□□□□ 0.52
CLK3-217ENST00000566126 SYN3O14994 580 aa18.29■□□□□ 0.52
CLK3-217ENST00000566126 PRPF3O43395 683 aaKnown RBP18.29■□□□□ 0.52
CLK3-217ENST00000566126 SLC37A4O43826 429 aa18.29■□□□□ 0.52
CLK3-217ENST00000566126 VNN2O95498 520 aa18.29■□□□□ 0.52
CLK3-217ENST00000566126 IGHDP01880 384 aa18.29■□□□□ 0.52
CLK3-217ENST00000566126 MCM2P49736 904 aa18.29■□□□□ 0.52
CLK3-217ENST00000566126 EXOSC10Q01780 885 aaKnown RBP18.29■□□□□ 0.52
CLK3-217ENST00000566126 RUNX3Q13761 415 aa18.29■□□□□ 0.52
CLK3-217ENST00000566126 CTXN3Q4LDR2 81 aa18.29■□□□□ 0.52
CLK3-217ENST00000566126 CREB3L3Q68CJ9 461 aa18.29■□□□□ 0.52
CLK3-217ENST00000566126 POLR3CQ9BUI4 534 aaPredicted RBP18.29■□□□□ 0.52
CLK3-217ENST00000566126 FZD8Q9H461 694 aa18.29■□□□□ 0.52
CLK3-217ENST00000566126 GKN1Q9NS71 199 aa18.29■□□□□ 0.52
CLK3-217ENST00000566126 PRMT7Q9NVM4 692 aaPredicted RBP18.29■□□□□ 0.52
CLK3-217ENST00000566126 VPS54Q9P1Q0 977 aa18.29■□□□□ 0.52
CLK3-217ENST00000566126 TPCN1Q9ULQ1 816 aa18.29■□□□□ 0.52
CLK3-217ENST00000566126 USP20Q9Y2K6 914 aa18.29■□□□□ 0.52
CLK3-217ENST00000566126 RAI2Q9Y5P3 530 aa18.29■□□□□ 0.52
CLK3-217ENST00000566126 PCDH15Q96QU1 1955 aa18.28■□□□□ 0.52
CLK3-217ENST00000566126 TK2O00142 265 aa18.28■□□□□ 0.52
CLK3-217ENST00000566126 N4BP3O15049 544 aa18.28■□□□□ 0.52
CLK3-217ENST00000566126 DRD1P21728 446 aa18.28■□□□□ 0.52
CLK3-217ENST00000566126 U2AF2P26368 475 aaKnown RBP eCLIP18.28■□□□□ 0.523e-6■■□□□ 13
CLK3-217ENST00000566126 GALK1P51570 392 aa18.28■□□□□ 0.52
CLK3-217ENST00000566126 CTTNQ14247 550 aaKnown RBP18.28■□□□□ 0.52
CLK3-217ENST00000566126 FAM187BQ17R55 369 aa18.28■□□□□ 0.52
CLK3-217ENST00000566126 GPR158Q5T848 1215 aa18.28■□□□□ 0.52
CLK3-217ENST00000566126 SLC23A3Q6PIS1 610 aa18.28■□□□□ 0.52
CLK3-217ENST00000566126 RASSF3Q86WH2 238 aa18.28■□□□□ 0.52
CLK3-217ENST00000566126 DYDC2Q96IM9 177 aa18.28■□□□□ 0.52
Retrieved 100 of 20,778 RNA–protein pairs in 11.1 ms