RNA–Protein interactions for RNA: ENST00000565316.6

CLN3-216, Transcript of CLN3, battenin, humanhuman

TSL 1 (best) BASIC

Gene CLN3, Length 1,318 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-216ENST00000565316 MAGEA9P43362 315 aa18.62■□□□□ 0.57
CLN3-216ENST00000565316 YWHAHQ04917 246 aaPredicted RBP18.62■□□□□ 0.57
CLN3-216ENST00000565316 GRIN1Q05586 938 aa18.62■□□□□ 0.57
CLN3-216ENST00000565316 TWF1Q12792 350 aa18.62■□□□□ 0.57
CLN3-216ENST00000565316 CYP4A22Q5TCH4 519 aa18.62■□□□□ 0.57
CLN3-216ENST00000565316 SLC39A4Q6P5W5 647 aa18.62■□□□□ 0.57
CLN3-216ENST00000565316 PDZD4Q76G19 769 aaPredicted RBP18.62■□□□□ 0.57
CLN3-216ENST00000565316 ELMOD1Q8N336 334 aa18.62■□□□□ 0.57
CLN3-216ENST00000565316 LEMD2Q8NC56 503 aa18.62■□□□□ 0.57
CLN3-216ENST00000565316 DNASE1L2Q92874 299 aa18.62■□□□□ 0.57
CLN3-216ENST00000565316 CLDN23Q96B33 292 aa18.62■□□□□ 0.57
CLN3-216ENST00000565316 ZNF512Q96ME7 567 aaPredicted RBP18.62■□□□□ 0.57
CLN3-216ENST00000565316 ASB16Q96NS5 453 aa18.62■□□□□ 0.57
CLN3-216ENST00000565316 NELL2Q99435 816 aa18.62■□□□□ 0.57
CLN3-216ENST00000565316 UPF2Q9HAU5 1272 aaKnown RBP18.62■□□□□ 0.57
CLN3-216ENST00000565316 CACNA1AO00555 2505 aa18.62■□□□□ 0.57
CLN3-216ENST00000565316 K7ENM7 598 aa18.61■□□□□ 0.57
CLN3-216ENST00000565316 XPOTO43592 962 aaKnown RBP18.61■□□□□ 0.57
CLN3-216ENST00000565316 TRAK2O60296 914 aa18.61■□□□□ 0.57
CLN3-216ENST00000565316 TYMPP19971 482 aa18.61■□□□□ 0.57
CLN3-216ENST00000565316 GTF2BQ00403 316 aa18.61■□□□□ 0.57
CLN3-216ENST00000565316 MCM6Q14566 821 aa18.61■□□□□ 0.57
CLN3-216ENST00000565316 UBXN2BQ14CS0 331 aa18.61■□□□□ 0.57
CLN3-216ENST00000565316 ZNF528Q3MIS6 628 aa18.61■□□□□ 0.57
CLN3-216ENST00000565316 SPATA1Q5VX52 437 aa18.61■□□□□ 0.57
CLN3-216ENST00000565316 IQCEQ6IPM2 695 aa18.61■□□□□ 0.57
CLN3-216ENST00000565316 ZC3H14Q6PJT7 736 aaKnown RBP18.61■□□□□ 0.57
CLN3-216ENST00000565316 CD302Q8IX05 232 aa18.61■□□□□ 0.57
CLN3-216ENST00000565316 HS6ST3Q8IZP7 471 aa18.61■□□□□ 0.57
CLN3-216ENST00000565316 RPF1Q9H9Y2 349 aaKnown RBP18.61■□□□□ 0.57
CLN3-216ENST00000565316 TRPV4Q9HBA0 871 aa18.61■□□□□ 0.57
CLN3-216ENST00000565316 ZFP14Q9HCL3 533 aa18.61■□□□□ 0.57
CLN3-216ENST00000565316 CPSF3Q9UKF6 684 aaKnown RBP18.61■□□□□ 0.57
CLN3-216ENST00000565316 TIMM13Q9Y5L4 95 aaPredicted RBP18.61■□□□□ 0.57
CLN3-216ENST00000565316 OR6C75A6NL08 312 aa18.6■□□□□ 0.57
CLN3-216ENST00000565316 CPB1P15086 417 aa18.6■□□□□ 0.57
CLN3-216ENST00000565316 CD72P21854 359 aa18.6■□□□□ 0.57
CLN3-216ENST00000565316 PAX3P23760 479 aa18.6■□□□□ 0.57
CLN3-216ENST00000565316 ABCD1P33897 745 aa18.6■□□□□ 0.57
CLN3-216ENST00000565316 GUCY2FP51841 1108 aa18.6■□□□□ 0.57
CLN3-216ENST00000565316 GPR17Q13304 367 aa18.6■□□□□ 0.57
CLN3-216ENST00000565316 FZD5Q13467 585 aa18.6■□□□□ 0.57
CLN3-216ENST00000565316 DHX8Q14562 1220 aaKnown RBP18.6■□□□□ 0.57
CLN3-216ENST00000565316 KARSQ15046 597 aaKnown RBP18.6■□□□□ 0.57
CLN3-216ENST00000565316 TPRG1Q6ZUI0 275 aa18.6■□□□□ 0.57
CLN3-216ENST00000565316 MAP4K3Q8IVH8 894 aa18.6■□□□□ 0.57
CLN3-216ENST00000565316 SMARCD2Q92925 531 aa18.6■□□□□ 0.57
CLN3-216ENST00000565316 ZSWIM3Q96MP5 696 aa18.6■□□□□ 0.57
CLN3-216ENST00000565316 MSTO1Q9BUK6 570 aa18.6■□□□□ 0.57
CLN3-216ENST00000565316 CCSER1Q9C0I3 900 aa18.6■□□□□ 0.57
CLN3-216ENST00000565316 ST6GALNAC4Q9H4F1 302 aa18.6■□□□□ 0.57
CLN3-216ENST00000565316 ASAH2Q9NR71 780 aa18.6■□□□□ 0.57
CLN3-216ENST00000565316 FBXO4Q9UKT5 387 aa18.6■□□□□ 0.57
CLN3-216ENST00000565316 GPR179Q6PRD1 2367 aa18.6■□□□□ 0.57
CLN3-216ENST00000565316 DMXL1Q9Y485 3027 aa18.6■□□□□ 0.57
CLN3-216ENST00000565316 PPEF2O14830 753 aa18.59■□□□□ 0.57
CLN3-216ENST00000565316 TARSP26639 723 aaKnown RBP18.59■□□□□ 0.57
CLN3-216ENST00000565316 DDIT3P35638 169 aa18.59■□□□□ 0.57
CLN3-216ENST00000565316 RPS9P46781 194 aaKnown RBP18.59■□□□□ 0.57
CLN3-216ENST00000565316 LILRA4P59901 499 aa18.59■□□□□ 0.57
CLN3-216ENST00000565316 MYBPC2Q14324 1141 aa18.59■□□□□ 0.57
CLN3-216ENST00000565316 SF3A1Q15459 793 aaKnown RBP18.59■□□□□ 0.57
CLN3-216ENST00000565316 ZNF852Q6ZMS4 543 aa18.59■□□□□ 0.57
CLN3-216ENST00000565316 USP37Q86T82 979 aa18.59■□□□□ 0.57
CLN3-216ENST00000565316 ZNF687Q8N1G0 1237 aa18.59■□□□□ 0.57
CLN3-216ENST00000565316 KCNG4Q8TDN1 519 aa18.59■□□□□ 0.57
CLN3-216ENST00000565316 LARP4BQ92615 738 aaKnown RBP18.59■□□□□ 0.57
CLN3-216ENST00000565316 BORCS6Q96GS4 357 aa18.59■□□□□ 0.57
CLN3-216ENST00000565316 LRRC3Q9BY71 257 aa18.59■□□□□ 0.57
CLN3-216ENST00000565316 TRPV5Q9NQA5 729 aa18.59■□□□□ 0.57
CLN3-216ENST00000565316 HEBP1Q9NRV9 189 aa18.59■□□□□ 0.57
CLN3-216ENST00000565316 SPATA6Q9NWH7 488 aaPredicted RBP18.59■□□□□ 0.57
CLN3-216ENST00000565316 DERAQ9Y315 318 aa18.59■□□□□ 0.57
CLN3-216ENST00000565316 YIPF1Q9Y548 306 aa18.59■□□□□ 0.57
CLN3-216ENST00000565316 STYXL1Q9Y6J8 313 aa18.59■□□□□ 0.57
CLN3-216ENST00000565316 F5P12259 2224 aa18.59■□□□□ 0.57
CLN3-216ENST00000565316 DCHS1Q96JQ0 3298 aa18.59■□□□□ 0.57
CLN3-216ENST00000565316 MIA3Q5JRA6 1907 aa18.58■□□□□ 0.57
CLN3-216ENST00000565316 FANCMQ8IYD8 2048 aa18.58■□□□□ 0.57
CLN3-216ENST00000565316 PIRO00625 290 aa18.58■□□□□ 0.57
CLN3-216ENST00000565316 KRT18P05783 430 aaKnown RBP18.58■□□□□ 0.57
CLN3-216ENST00000565316 OR4Q2P0C623 313 aa18.58■□□□□ 0.57
CLN3-216ENST00000565316 NMT1P30419 496 aaKnown RBP18.58■□□□□ 0.57
CLN3-216ENST00000565316 FOXK2Q01167 660 aa18.58■□□□□ 0.57
CLN3-216ENST00000565316 PLD1Q13393 1074 aa18.58■□□□□ 0.57
CLN3-216ENST00000565316 CUL4AQ13619 759 aa18.58■□□□□ 0.57
CLN3-216ENST00000565316 OVOS1Q6IE37 1185 aa18.58■□□□□ 0.57
CLN3-216ENST00000565316 JADE1Q6IE81 842 aa18.58■□□□□ 0.57
CLN3-216ENST00000565316 DSTYKQ6XUX3 929 aa18.58■□□□□ 0.57
CLN3-216ENST00000565316 SHKBP1Q8TBC3 707 aa18.58■□□□□ 0.57
CLN3-216ENST00000565316 TRMT61BQ9BVS5 477 aaKnown RBP18.58■□□□□ 0.57
CLN3-216ENST00000565316 DNAJC25Q9H1X3 360 aa18.58■□□□□ 0.57
CLN3-216ENST00000565316 CRISPLD1Q9H336 500 aa18.58■□□□□ 0.57
CLN3-216ENST00000565316 MRPS17Q9Y2R5 130 aaKnown RBP18.58■□□□□ 0.57
CLN3-216ENST00000565316 ANO9A1A5B4 782 aa18.57■□□□□ 0.56
CLN3-216ENST00000565316 ANKRD63C9JTQ0 380 aa18.57■□□□□ 0.56
CLN3-216ENST00000565316 SPTLC1O15269 473 aa18.57■□□□□ 0.56
CLN3-216ENST00000565316 NCAM2O15394 837 aa18.57■□□□□ 0.56
CLN3-216ENST00000565316 LAMTOR5O43504 91 aa18.57■□□□□ 0.56
CLN3-216ENST00000565316 TBCAO75347 108 aaKnown RBP18.57■□□□□ 0.56
Retrieved 100 of 20,778 RNA–protein pairs in 95.9 ms