RNA–Protein interactions for RNA: ENST00000564353.5

CLK3-215, Transcript of CDC like kinase 3, humanhuman

TSL 2

Gene CLK3, Length 2,847 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-215ENST00000564353 YTHDF3Q7Z739 585 aaKnown RBP14.32□□□□□ -0.12
CLK3-215ENST00000564353 TMC2Q8TDI7 906 aa14.32□□□□□ -0.12
CLK3-215ENST00000564353 SPOCK2Q92563 424 aa14.32□□□□□ -0.12
CLK3-215ENST00000564353 MCEEQ96PE7 176 aa14.32□□□□□ -0.12
CLK3-215ENST00000564353 OSBPL8Q9BZF1 889 aa14.32□□□□□ -0.12
CLK3-215ENST00000564353 ZNF214Q9UL59 606 aaPredicted RBP14.32□□□□□ -0.12
CLK3-215ENST00000564353 DOCK5Q9H7D0 1870 aa14.32□□□□□ -0.12
CLK3-215ENST00000564353 CCDC189A1A4V9 331 aa14.32□□□□□ -0.12
CLK3-215ENST00000564353 C5orf60A6NFR6 353 aa14.32□□□□□ -0.12
CLK3-215ENST00000564353 GGPS1O95749 300 aa14.32□□□□□ -0.12
CLK3-215ENST00000564353 C4BPAP04003 597 aaKnown RBP14.32□□□□□ -0.12
CLK3-215ENST00000564353 GTF2H1P32780 548 aa14.32□□□□□ -0.12
CLK3-215ENST00000564353 NRLP54845 237 aa14.32□□□□□ -0.12
CLK3-215ENST00000564353 GCNT1Q02742 428 aa14.32□□□□□ -0.12
CLK3-215ENST00000564353 CUL2Q13617 745 aa14.32□□□□□ -0.12
CLK3-215ENST00000564353 ZACNQ401N2 412 aa14.32□□□□□ -0.12
CLK3-215ENST00000564353 VSTM1Q6UX27 236 aa14.32□□□□□ -0.12
CLK3-215ENST00000564353 MON1BQ7L1V2 547 aa14.32□□□□□ -0.12
CLK3-215ENST00000564353 DPH6Q7L8W6 267 aa14.32□□□□□ -0.12
CLK3-215ENST00000564353 FUKQ8N0W3 1084 aa14.32□□□□□ -0.12
CLK3-215ENST00000564353 LRRC71Q8N4P6 559 aa14.32□□□□□ -0.12
CLK3-215ENST00000564353 SAMD3Q8N6K7 520 aa14.32□□□□□ -0.12
CLK3-215ENST00000564353 PAGR1Q9BTK6 254 aa14.32□□□□□ -0.12
CLK3-215ENST00000564353 MTMR12Q9C0I1 747 aa14.32□□□□□ -0.12
CLK3-215ENST00000564353 CYP39A1Q9NYL5 469 aa14.32□□□□□ -0.12
CLK3-215ENST00000564353 ARHGAP28Q9P2N2 729 aa14.32□□□□□ -0.12
CLK3-215ENST00000564353 DNPEPQ9ULA0 475 aa14.32□□□□□ -0.12
CLK3-215ENST00000564353 TRIM33Q9UPN9 1127 aa14.32□□□□□ -0.12
CLK3-215ENST00000564353 AGAP1Q9UPQ3 857 aa14.32□□□□□ -0.12
CLK3-215ENST00000564353 CCT8L1PA6NM43 557 aa14.31□□□□□ -0.12
CLK3-215ENST00000564353 PIK3R2O00459 728 aa14.31□□□□□ -0.12
CLK3-215ENST00000564353 EXTL3O43909 919 aa14.31□□□□□ -0.12
CLK3-215ENST00000564353 GAS8O95995 478 aa14.31□□□□□ -0.12
CLK3-215ENST00000564353 GAD2Q05329 585 aa14.31□□□□□ -0.12
CLK3-215ENST00000564353 NTPCRQ9BSD7 190 aaKnown RBP14.31□□□□□ -0.12
CLK3-215ENST00000564353 PICK1Q9NRD5 415 aa14.31□□□□□ -0.12
CLK3-215ENST00000564353 CNOT7Q9UIV1 285 aaKnown RBP14.31□□□□□ -0.12
CLK3-215ENST00000564353 ZNF148Q9UQR1 794 aa14.31□□□□□ -0.12
CLK3-215ENST00000564353 EPB41L3Q9Y2J2 1087 aaPredicted RBP14.31□□□□□ -0.12
CLK3-215ENST00000564353 SBDSQ9Y3A5 250 aaKnown RBP eCLIP14.31□□□□□ -0.12
CLK3-215ENST00000564353 IVNS1ABPQ9Y6Y0 642 aa14.31□□□□□ -0.12
CLK3-215ENST00000564353 MAPK13O15264 365 aa14.31□□□□□ -0.12
CLK3-215ENST00000564353 TTC4O95801 387 aa14.31□□□□□ -0.12
CLK3-215ENST00000564353 PTPRAP18433 802 aa14.31□□□□□ -0.12
CLK3-215ENST00000564353 ACO1P21399 889 aaKnown RBP14.31□□□□□ -0.12
CLK3-215ENST00000564353 BAG6P46379 1132 aa14.31□□□□□ -0.12
CLK3-215ENST00000564353 ANGEL2Q5VTE6 544 aaKnown RBP14.31□□□□□ -0.12
CLK3-215ENST00000564353 FKBP1CQ5VVH2 108 aa14.31□□□□□ -0.12
CLK3-215ENST00000564353 MFSD7Q6UXD7 560 aa14.31□□□□□ -0.12
CLK3-215ENST00000564353 ABHD15Q6UXT9 468 aa14.31□□□□□ -0.12
CLK3-215ENST00000564353 CCDC91Q7Z6B0 441 aa14.31□□□□□ -0.12
CLK3-215ENST00000564353 USP37Q86T82 979 aa14.31□□□□□ -0.12
CLK3-215ENST00000564353 ZNF280CQ8ND82 737 aa14.31□□□□□ -0.12
CLK3-215ENST00000564353 MCPH1Q8NEM0 835 aa14.31□□□□□ -0.12
CLK3-215ENST00000564353 ZBED3Q96IU2 234 aaPredicted RBP14.31□□□□□ -0.12
CLK3-215ENST00000564353 PLVAPQ9BX97 442 aa14.31□□□□□ -0.12
CLK3-215ENST00000564353 BAIAP2L1Q9UHR4 511 aa14.31□□□□□ -0.12
CLK3-215ENST00000564353 PNMA3Q9UL41 463 aa14.31□□□□□ -0.12
CLK3-215ENST00000564353 RASSF9O75901 435 aa14.3□□□□□ -0.12
CLK3-215ENST00000564353 PROSCO94903 275 aa14.3□□□□□ -0.12
CLK3-215ENST00000564353 NOMO3P69849 1222 aa14.3□□□□□ -0.12
CLK3-215ENST00000564353 NCOA4Q13772 614 aa14.3□□□□□ -0.12
CLK3-215ENST00000564353 ANKMY2Q8IV38 441 aa14.3□□□□□ -0.12
CLK3-215ENST00000564353 ANKRD35Q8N283 1001 aa14.3□□□□□ -0.12
CLK3-215ENST00000564353 ANKS4BQ8N8V4 417 aa14.3□□□□□ -0.12
CLK3-215ENST00000564353 SAYSD1Q9NPB0 183 aa14.3□□□□□ -0.12
CLK3-215ENST00000564353 ZNF302Q9NR11 478 aa14.3□□□□□ -0.12
CLK3-215ENST00000564353 CEP350Q5VT06 3117 aa14.3□□□□□ -0.12
CLK3-215ENST00000564353 UBOX5O94941 541 aa14.3□□□□□ -0.12
CLK3-215ENST00000564353 KRT1P04264 644 aa14.3□□□□□ -0.12
CLK3-215ENST00000564353 RAP1GAPP47736 663 aa14.3□□□□□ -0.12
CLK3-215ENST00000564353 OGDHQ02218 1023 aa14.3□□□□□ -0.12
CLK3-215ENST00000564353 CLUL1Q15846 466 aa14.3□□□□□ -0.12
CLK3-215ENST00000564353 RHBDF2Q6PJF5 856 aa14.3□□□□□ -0.12
CLK3-215ENST00000564353 TAOK1Q7L7X3 1001 aa14.3□□□□□ -0.12
CLK3-215ENST00000564353 FAM228AQ86W67 206 aa14.3□□□□□ -0.12
CLK3-215ENST00000564353 C4orf33Q8N1A6 199 aa14.3□□□□□ -0.12
CLK3-215ENST00000564353 ATL2Q8NHH9 583 aa14.3□□□□□ -0.12
CLK3-215ENST00000564353 TRAPPC12Q8WVT3 735 aa14.3□□□□□ -0.12
CLK3-215ENST00000564353 VTI1AQ96AJ9 217 aa14.3□□□□□ -0.12
CLK3-215ENST00000564353 RBM15Q96T37 977 aaKnown RBP eCLIP14.3□□□□□ -0.12
CLK3-215ENST00000564353 TMEM121Q9BTD3 319 aa14.3□□□□□ -0.12
CLK3-215ENST00000564353 ZWILCHQ9H900 591 aa14.3□□□□□ -0.12
CLK3-215ENST00000564353 NXF1Q9UBU9 619 aaKnown RBP14.3□□□□□ -0.12
CLK3-215ENST00000564353 NAALADL1Q9UQQ1 740 aa14.3□□□□□ -0.12
CLK3-215ENST00000564353 MYL6P60660 151 aa14.29□□□□□ -0.12
CLK3-215ENST00000564353 TFAMQ00059 246 aaKnown RBP14.29□□□□□ -0.12
CLK3-215ENST00000564353 CENPCQ03188 943 aa14.29□□□□□ -0.12
CLK3-215ENST00000564353 MIS18BP1Q6P0N0 1132 aa14.29□□□□□ -0.12
CLK3-215ENST00000564353 C15orf39Q6ZRI6 1047 aa14.29□□□□□ -0.12
CLK3-215ENST00000564353 THNSL1Q8IYQ7 743 aa14.29□□□□□ -0.12
CLK3-215ENST00000564353 ZNF606Q8WXB4 792 aa14.29□□□□□ -0.12
CLK3-215ENST00000564353 GPRASP2Q96D09 838 aa14.29□□□□□ -0.12
CLK3-215ENST00000564353 C12orf65Q9H3J6 166 aaKnown RBP14.29□□□□□ -0.12
CLK3-215ENST00000564353 PDLIM7Q9NR12 457 aa14.29□□□□□ -0.12
CLK3-215ENST00000564353 FAM120AQ9NZB2 1118 aaKnown RBP eCLIP14.29□□□□□ -0.12
CLK3-215ENST00000564353 TPX2Q9ULW0 747 aaKnown RBP14.29□□□□□ -0.12
CLK3-215ENST00000564353 SUPT20HL2P0C7V6 817 aa14.29□□□□□ -0.12
CLK3-215ENST00000564353 ITIH2P19823 946 aa14.29□□□□□ -0.12
CLK3-215ENST00000564353 GARTP22102 1010 aa14.29□□□□□ -0.12
Retrieved 100 of 20,778 RNA–protein pairs in 18 ms