RNA–Protein interactions for RNA: ENST00000563874.5

CLN3-210, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 3,081 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-210ENST00000563874 CCNG2Q16589 344 aa14□□□□□ -0.17
CLN3-210ENST00000563874 TRABD2AQ86V40 505 aa14□□□□□ -0.17
CLN3-210ENST00000563874 TMEM174Q8WUU8 243 aa14□□□□□ -0.17
CLN3-210ENST00000563874 ST6GALNAC4Q9H4F1 302 aa14□□□□□ -0.17
CLN3-210ENST00000563874 TRABDQ9H4I3 376 aa14□□□□□ -0.17
CLN3-210ENST00000563874 VPS37BQ9H9H4 285 aa14□□□□□ -0.17
CLN3-210ENST00000563874 SLC5A4Q9NY91 659 aa14□□□□□ -0.17
CLN3-210ENST00000563874 HERC5Q9UII4 1024 aaKnown RBP14□□□□□ -0.17
CLN3-210ENST00000563874 DNPEPQ9ULA0 475 aa14□□□□□ -0.17
CLN3-210ENST00000563874 ZNF148Q9UQR1 794 aa14□□□□□ -0.17
CLN3-210ENST00000563874 GOLGA8SH3BPF8 625 aa13.99□□□□□ -0.17
CLN3-210ENST00000563874 GOLGA8MH3BSY2 632 aa13.99□□□□□ -0.17
CLN3-210ENST00000563874 ASMTLO95671 621 aa13.99□□□□□ -0.17
CLN3-210ENST00000563874 WNT7BP56706 349 aa13.99□□□□□ -0.17
CLN3-210ENST00000563874 SETDB1Q15047 1291 aa13.99□□□□□ -0.17
CLN3-210ENST00000563874 ANO5Q75V66 913 aa13.99□□□□□ -0.17
CLN3-210ENST00000563874 RHOT1Q8IXI2 618 aa13.99□□□□□ -0.17
CLN3-210ENST00000563874 TAB3Q8N5C8 712 aaPredicted RBP13.99□□□□□ -0.17
CLN3-210ENST00000563874 MICAL1Q8TDZ2 1067 aa13.99□□□□□ -0.17
CLN3-210ENST00000563874 LRRC37BQ96QE4 947 aa13.99□□□□□ -0.17
CLN3-210ENST00000563874 TAAR1Q96RJ0 339 aa13.99□□□□□ -0.17
CLN3-210ENST00000563874 ANKRD31Q8N7Z5 1873 aa13.99□□□□□ -0.17
CLN3-210ENST00000563874 ZNF536O15090 1300 aa13.99□□□□□ -0.17
CLN3-210ENST00000563874 TESPA1A2RU30 521 aaPredicted RBP13.99□□□□□ -0.17
CLN3-210ENST00000563874 CBX6O95503 412 aa13.99□□□□□ -0.17
CLN3-210ENST00000563874 KLRC2P26717 231 aa13.99□□□□□ -0.17
CLN3-210ENST00000563874 PSMC4P43686 418 aa13.99□□□□□ -0.17
CLN3-210ENST00000563874 TRIM68Q6AZZ1 485 aa13.99□□□□□ -0.17
CLN3-210ENST00000563874 MON1BQ7L1V2 547 aa13.99□□□□□ -0.17
CLN3-210ENST00000563874 SPDL1Q96EA4 605 aa13.99□□□□□ -0.17
CLN3-210ENST00000563874 MFSD14AQ96MC6 490 aa13.99□□□□□ -0.17
CLN3-210ENST00000563874 KIAA1683Q9H0B3 1180 aa13.99□□□□□ -0.17
CLN3-210ENST00000563874 RAVER2Q9HCJ3 691 aaKnown RBP13.99□□□□□ -0.17
CLN3-210ENST00000563874 AVENQ9NQS1 362 aaPredicted RBP13.99□□□□□ -0.17
CLN3-210ENST00000563874 ZMYND8Q9ULU4 1186 aaPredicted RBP13.99□□□□□ -0.17
CLN3-210ENST00000563874 PCDHB2Q9Y5E7 798 aa13.99□□□□□ -0.17
CLN3-210ENST00000563874 SLX4Q8IY92 1834 aa13.99□□□□□ -0.17
CLN3-210ENST00000563874 A0A1W2PPM1 405 aa13.99□□□□□ -0.17
CLN3-210ENST00000563874 TLR3O15455 904 aaKnown RBP13.99□□□□□ -0.17
CLN3-210ENST00000563874 PECAM1P16284 738 aaPredicted RBP13.99□□□□□ -0.17
CLN3-210ENST00000563874 TNNI1P19237 187 aa13.99□□□□□ -0.17
CLN3-210ENST00000563874 CA4P22748 312 aa13.99□□□□□ -0.17
CLN3-210ENST00000563874 POLGP54098 1239 aaPredicted RBP13.99□□□□□ -0.17
CLN3-210ENST00000563874 PSMC5P62195 406 aa13.99□□□□□ -0.17
CLN3-210ENST00000563874 GCNT1Q02742 428 aa13.99□□□□□ -0.17
CLN3-210ENST00000563874 GPS1Q13098 491 aa13.99□□□□□ -0.17
CLN3-210ENST00000563874 MAMLD1Q13495 774 aa13.99□□□□□ -0.17
CLN3-210ENST00000563874 CLEC4DQ8WXI8 215 aa13.99□□□□□ -0.17
CLN3-210ENST00000563874 TMEM39BQ9GZU3 492 aa13.99□□□□□ -0.17
CLN3-210ENST00000563874 TMOD2Q9NZR1 351 aa13.99□□□□□ -0.17
CLN3-210ENST00000563874 WDR91A4D1P6 747 aa13.98□□□□□ -0.17
CLN3-210ENST00000563874 H0Y3Z8 333 aa13.98□□□□□ -0.17
CLN3-210ENST00000563874 IFNB1P01574 187 aa13.98□□□□□ -0.17
CLN3-210ENST00000563874 CAP2P40123 477 aa13.98□□□□□ -0.17
CLN3-210ENST00000563874 ARSEP51690 589 aa13.98□□□□□ -0.17
CLN3-210ENST00000563874 RPL7AP62424 266 aaKnown RBP13.98□□□□□ -0.17
CLN3-210ENST00000563874 NOP14P78316 857 aaKnown RBP13.98□□□□□ -0.17
CLN3-210ENST00000563874 SLC1A5Q15758 541 aa13.98□□□□□ -0.17
CLN3-210ENST00000563874 TMEM270Q6UE05 265 aa13.98□□□□□ -0.17
CLN3-210ENST00000563874 ZBED8Q8IZ13 594 aa13.98□□□□□ -0.17
CLN3-210ENST00000563874 ZCCHC9Q8N567 271 aaKnown RBP13.98□□□□□ -0.17
CLN3-210ENST00000563874 GADD45GIP1Q8TAE8 222 aaPredicted RBP13.98□□□□□ -0.17
CLN3-210ENST00000563874 TXLNGQ9NUQ3 528 aa13.98□□□□□ -0.17
CLN3-210ENST00000563874 TELO2Q9Y4R8 837 aa13.98□□□□□ -0.17
CLN3-210ENST00000563874 UBIAD1Q9Y5Z9 338 aa13.98□□□□□ -0.17
CLN3-210ENST00000563874 ICAM1P05362 532 aa13.98□□□□□ -0.17
CLN3-210ENST00000563874 FGFR1P11362 822 aa13.98□□□□□ -0.17
CLN3-210ENST00000563874 ACOT2P49753 483 aa13.98□□□□□ -0.17
CLN3-210ENST00000563874 FAM160B2Q86V87 743 aa13.98□□□□□ -0.17
CLN3-210ENST00000563874 ANKMY2Q8IV38 441 aa13.98□□□□□ -0.17
CLN3-210ENST00000563874 C4orf19Q8IY42 314 aa13.98□□□□□ -0.17
CLN3-210ENST00000563874 GPD1LQ8N335 351 aa13.98□□□□□ -0.17
CLN3-210ENST00000563874 TMC2Q8TDI7 906 aa13.98□□□□□ -0.17
CLN3-210ENST00000563874 GRAMD1AQ96CP6 724 aa13.98□□□□□ -0.17
CLN3-210ENST00000563874 CEP170P1Q96L14 293 aa13.98□□□□□ -0.17
CLN3-210ENST00000563874 FAM81BQ96LP2 452 aa13.98□□□□□ -0.17
CLN3-210ENST00000563874 CFAP57Q96MR6 1250 aa13.98□□□□□ -0.17
CLN3-210ENST00000563874 C12orf65Q9H3J6 166 aaKnown RBP13.98□□□□□ -0.17
CLN3-210ENST00000563874 FEM1BQ9UK73 627 aa13.98□□□□□ -0.17
CLN3-210ENST00000563874 GM2AP17900 193 aa13.97□□□□□ -0.17
CLN3-210ENST00000563874 NFX1Q12986 1120 aaKnown RBP13.97□□□□□ -0.17
CLN3-210ENST00000563874 ACVR2BQ13705 512 aa13.97□□□□□ -0.17
CLN3-210ENST00000563874 SPARCL1Q14515 664 aa13.97□□□□□ -0.17
CLN3-210ENST00000563874 TAF11Q15544 211 aa13.97□□□□□ -0.17
CLN3-210ENST00000563874 ZNF513Q8N8E2 541 aaPredicted RBP13.97□□□□□ -0.17
CLN3-210ENST00000563874 BBOF1Q8ND07 529 aa13.97□□□□□ -0.17
CLN3-210ENST00000563874 SYTL5Q8TDW5 730 aaPredicted RBP13.97□□□□□ -0.17
CLN3-210ENST00000563874 SMC6Q96SB8 1091 aa13.97□□□□□ -0.17
CLN3-210ENST00000563874 C10orf88Q9H8K7 445 aa13.97□□□□□ -0.17
CLN3-210ENST00000563874 ACTL7BQ9Y614 415 aa13.97□□□□□ -0.17
CLN3-210ENST00000563874 TTC36A6NLP5 189 aa13.97□□□□□ -0.17
CLN3-210ENST00000563874 YDJCA8MPS7 323 aa13.97□□□□□ -0.17
CLN3-210ENST00000563874 LYPLA2O95372 231 aa13.97□□□□□ -0.17
CLN3-210ENST00000563874 HLA-DRAP01903 254 aa13.97□□□□□ -0.17
CLN3-210ENST00000563874 EPHB2P29323 1055 aa13.97□□□□□ -0.17
CLN3-210ENST00000563874 CHRNA5P30532 468 aa13.97□□□□□ -0.17
CLN3-210ENST00000563874 PIK3CAP42336 1068 aa13.97□□□□□ -0.17
CLN3-210ENST00000563874 SNRPFP62306 86 aaKnown RBP13.97□□□□□ -0.17
CLN3-210ENST00000563874 PLCB3Q01970 1234 aa13.97□□□□□ -0.17
CLN3-210ENST00000563874 WDR44Q5JSH3 913 aa13.97□□□□□ -0.17
Retrieved 100 of 20,778 RNA–protein pairs in 64.5 ms