RNA–Protein interactions for RNA: ENST00000563448.1

SMG1-208, Transcript of SMG1, nonsense mediated mRNA decay associated PI3K related kinase, humanhuman

TSL 2

Gene SMG1, Length 2,016 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMG1-208ENST00000563448 POMCP01189 267 aa10.9□□□□□ -0.66
SMG1-208ENST00000563448 RAG1P15918 1043 aa10.9□□□□□ -0.66
SMG1-208ENST00000563448 USP8P40818 1118 aa10.9□□□□□ -0.66
SMG1-208ENST00000563448 PTK2Q05397 1052 aa10.9□□□□□ -0.66
SMG1-208ENST00000563448 CLLU1OSQ5K130 101 aa10.9□□□□□ -0.66
SMG1-208ENST00000563448 CNKSR3Q6P9H4 555 aa10.9□□□□□ -0.66
SMG1-208ENST00000563448 SCARA5Q6ZMJ2 495 aa10.9□□□□□ -0.66
SMG1-208ENST00000563448 ZNF571Q7Z3V5 609 aaPredicted RBP10.9□□□□□ -0.66
SMG1-208ENST00000563448 CRIPAKQ8N1N5 446 aa10.9□□□□□ -0.66
SMG1-208ENST00000563448 C17orf53Q8N3J3 647 aaPredicted RBP10.9□□□□□ -0.66
SMG1-208ENST00000563448 LRRC52Q8N7C0 313 aa10.9□□□□□ -0.66
SMG1-208ENST00000563448 OLIG1Q8TAK6 271 aa10.9□□□□□ -0.66
SMG1-208ENST00000563448 BCO2Q9BYV7 579 aa10.9□□□□□ -0.66
SMG1-208ENST00000563448 SDCBP2Q9H190 292 aa10.9□□□□□ -0.66
SMG1-208ENST00000563448 SLC38A7Q9NVC3 462 aa10.9□□□□□ -0.66
SMG1-208ENST00000563448 CACNG4Q9UBN1 327 aa10.9□□□□□ -0.66
SMG1-208ENST00000563448 INPP5FQ9Y2H2 1132 aa10.9□□□□□ -0.66
SMG1-208ENST00000563448 R3HCC1Q9Y3T6 440 aaKnown RBP10.9□□□□□ -0.66
SMG1-208ENST00000563448 VWA8A3KMH1 1905 aa10.9□□□□□ -0.67
SMG1-208ENST00000563448 COL4A6Q14031 1691 aa10.89□□□□□ -0.67
SMG1-208ENST00000563448 CYP26A1O43174 497 aa10.89□□□□□ -0.67
SMG1-208ENST00000563448 NDUFA10O95299 355 aa10.89□□□□□ -0.67
SMG1-208ENST00000563448 WEE2P0C1S8 567 aa10.89□□□□□ -0.67
SMG1-208ENST00000563448 FGFR1P11362 822 aa10.89□□□□□ -0.67
SMG1-208ENST00000563448 CSF2RAP15509 400 aa10.89□□□□□ -0.67
SMG1-208ENST00000563448 IGFBP6P24592 240 aaPredicted RBP10.89□□□□□ -0.67
SMG1-208ENST00000563448 RAP1GAPP47736 663 aa10.89□□□□□ -0.67
SMG1-208ENST00000563448 MYO1EQ12965 1108 aa10.89□□□□□ -0.67
SMG1-208ENST00000563448 GRIK3Q13003 919 aa10.89□□□□□ -0.67
SMG1-208ENST00000563448 MFSD5Q6N075 450 aa10.89□□□□□ -0.67
SMG1-208ENST00000563448 FMNL3Q8IVF7 1028 aa10.89□□□□□ -0.67
SMG1-208ENST00000563448 CCDC170Q8IYT3 715 aa10.89□□□□□ -0.67
SMG1-208ENST00000563448 ACRBPQ8NEB7 543 aa10.89□□□□□ -0.67
SMG1-208ENST00000563448 FAXDC2Q96IV6 333 aa10.89□□□□□ -0.67
SMG1-208ENST00000563448 CCDC42Q96M95 316 aa10.89□□□□□ -0.67
SMG1-208ENST00000563448 DESI2Q9BSY9 194 aa10.89□□□□□ -0.67
SMG1-208ENST00000563448 ACP6Q9NPH0 428 aa10.89□□□□□ -0.67
SMG1-208ENST00000563448 CNTN6Q9UQ52 1028 aa10.89□□□□□ -0.67
SMG1-208ENST00000563448 PCDHB7Q9Y5E2 793 aa10.89□□□□□ -0.67
SMG1-208ENST00000563448 PCDHB4Q9Y5E5 795 aa10.89□□□□□ -0.67
SMG1-208ENST00000563448 BZW2Q9Y6E2 419 aaKnown RBP10.89□□□□□ -0.67
SMG1-208ENST00000563448 ESPNB1AK53 854 aa10.89□□□□□ -0.67
SMG1-208ENST00000563448 ZNF263O14978 683 aa10.89□□□□□ -0.67
SMG1-208ENST00000563448 SPTLC1O15269 473 aa10.89□□□□□ -0.67
SMG1-208ENST00000563448 CALCAP01258 141 aa10.89□□□□□ -0.67
SMG1-208ENST00000563448 KRT5P13647 590 aa10.89□□□□□ -0.67
SMG1-208ENST00000563448 MSNP26038 577 aaKnown RBP10.89□□□□□ -0.67
SMG1-208ENST00000563448 CYLC1P35663 651 aaPredicted RBP10.89□□□□□ -0.67
SMG1-208ENST00000563448 KIF11P52732 1056 aa10.89□□□□□ -0.67
SMG1-208ENST00000563448 CDH8P55286 799 aa10.89□□□□□ -0.67
SMG1-208ENST00000563448 LIN28BQ6ZN17 250 aaKnown RBP eCLIP10.89□□□□□ -0.67
SMG1-208ENST00000563448 SLC47A2Q86VL8 602 aa10.89□□□□□ -0.67
SMG1-208ENST00000563448 SYT11Q9BT88 431 aa10.89□□□□□ -0.67
SMG1-208ENST00000563448 SMYD3Q9H7B4 428 aa10.89□□□□□ -0.67
SMG1-208ENST00000563448 CISHQ9NSE2 258 aa10.89□□□□□ -0.67
SMG1-208ENST00000563448 SPTLC3Q9NUV7 552 aa10.89□□□□□ -0.67
SMG1-208ENST00000563448 USP27XA6NNY8 438 aa10.88□□□□□ -0.67
SMG1-208ENST00000563448 EIF3CLB5ME19 914 aaKnown RBP10.88□□□□□ -0.67
SMG1-208ENST00000563448 LCA5LO95447 670 aa10.88□□□□□ -0.67
SMG1-208ENST00000563448 CCDC172P0C7W6 258 aa10.88□□□□□ -0.67
SMG1-208ENST00000563448 CD58P19256 250 aa10.88□□□□□ -0.67
SMG1-208ENST00000563448 TAF6P49848 677 aa10.88□□□□□ -0.67
SMG1-208ENST00000563448 CLCNKBP51801 687 aa10.88□□□□□ -0.67
SMG1-208ENST00000563448 TNNC1P63316 161 aa10.88□□□□□ -0.67
SMG1-208ENST00000563448 IKBKEQ14164 716 aa10.88□□□□□ -0.67
SMG1-208ENST00000563448 NOMO2Q5JPE7 1267 aa10.88□□□□□ -0.67
SMG1-208ENST00000563448 TMEM270Q6UE05 265 aa10.88□□□□□ -0.67
SMG1-208ENST00000563448 GLB1LQ6UWU2 654 aa10.88□□□□□ -0.67
SMG1-208ENST00000563448 NOP9Q86U38 636 aaKnown RBP10.88□□□□□ -0.67
SMG1-208ENST00000563448 SLC20A1Q8WUM9 679 aa10.88□□□□□ -0.67
SMG1-208ENST00000563448 ZNF560Q96MR9 790 aa10.88□□□□□ -0.67
SMG1-208ENST00000563448 EIF3CQ99613 913 aaKnown RBP10.88□□□□□ -0.67
SMG1-208ENST00000563448 PAAF1Q9BRP4 392 aa10.88□□□□□ -0.67
SMG1-208ENST00000563448 DEF6Q9H4E7 631 aa10.88□□□□□ -0.67
SMG1-208ENST00000563448 KCND1Q9NSA2 647 aa10.88□□□□□ -0.67
SMG1-208ENST00000563448 REXO2Q9Y3B8 237 aaKnown RBP10.88□□□□□ -0.67
SMG1-208ENST00000563448 ADGRG1Q9Y653 693 aa10.88□□□□□ -0.67
SMG1-208ENST00000563448 A0A087X0T9 212 aa10.87□□□□□ -0.67
SMG1-208ENST00000563448 CASTOR2A6NHX0 329 aa10.87□□□□□ -0.67
SMG1-208ENST00000563448 KPNA7A9QM74 516 aa10.87□□□□□ -0.67
SMG1-208ENST00000563448 PODXLO00592 558 aa10.87□□□□□ -0.67
SMG1-208ENST00000563448 AKR1B10O60218 316 aa10.87□□□□□ -0.67
SMG1-208ENST00000563448 B4GALT3O60512 393 aa10.87□□□□□ -0.67
SMG1-208ENST00000563448 DDHD2O94830 711 aa10.87□□□□□ -0.67
SMG1-208ENST00000563448 FAM228BP0C875 321 aa10.87□□□□□ -0.67
SMG1-208ENST00000563448 P4HA1P13674 534 aa10.87□□□□□ -0.67
SMG1-208ENST00000563448 CYP11B1P15538 503 aa10.87□□□□□ -0.67
SMG1-208ENST00000563448 PNPLA4P41247 253 aa10.87□□□□□ -0.67
SMG1-208ENST00000563448 GATMP50440 423 aa10.87□□□□□ -0.67
SMG1-208ENST00000563448 ZNF132P52740 706 aa10.87□□□□□ -0.67
SMG1-208ENST00000563448 LILRA4P59901 499 aa10.87□□□□□ -0.67
SMG1-208ENST00000563448 GFPT1Q06210 699 aaPredicted RBP10.87□□□□□ -0.67
SMG1-208ENST00000563448 UPP1Q16831 310 aa10.87□□□□□ -0.67
SMG1-208ENST00000563448 ZNF280BQ86YH2 543 aa10.87□□□□□ -0.67
SMG1-208ENST00000563448 REXO1L1PQ8IX06 675 aa10.87□□□□□ -0.67
SMG1-208ENST00000563448 CCAR2Q8N163 923 aaKnown RBP10.87□□□□□ -0.67
SMG1-208ENST00000563448 TMEM199Q8N511 208 aa10.87□□□□□ -0.67
SMG1-208ENST00000563448 RBBP8NLQ8NC74 664 aaPredicted RBP10.87□□□□□ -0.67
SMG1-208ENST00000563448 LNX1Q8TBB1 728 aaPredicted RBP10.87□□□□□ -0.67
SMG1-208ENST00000563448 EPS8L1Q8TE68 723 aa10.87□□□□□ -0.67
Retrieved 100 of 20,778 RNA–protein pairs in 16.4 ms