RNA–Protein interactions for RNA: ENST00000562754.1

VPS4A-202, Transcript of vacuolar protein sorting 4 homolog A, humanhuman

TSL 2

Gene VPS4A, Length 633 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4A-202ENST00000562754 AARSP49588 968 aaKnown RBP eCLIP17.82■□□□□ 0.44
VPS4A-202ENST00000562754 LILRA4P59901 499 aa17.82■□□□□ 0.44
VPS4A-202ENST00000562754 SV2CQ496J9 727 aa17.82■□□□□ 0.44
VPS4A-202ENST00000562754 KLHDC7AQ5VTJ3 777 aa17.82■□□□□ 0.44
VPS4A-202ENST00000562754 DCLRE1AQ6PJP8 1040 aa17.82■□□□□ 0.44
VPS4A-202ENST00000562754 FIBCD1Q8N539 461 aa17.82■□□□□ 0.44
VPS4A-202ENST00000562754 COLGALT1Q8NBJ5 622 aa17.82■□□□□ 0.44
VPS4A-202ENST00000562754 KAT5Q92993 513 aa17.82■□□□□ 0.44
VPS4A-202ENST00000562754 IMPG2Q9BZV3 1241 aa17.82■□□□□ 0.44
VPS4A-202ENST00000562754 NIF3L1Q9GZT8 377 aa17.82■□□□□ 0.44
VPS4A-202ENST00000562754 APEX2Q9UBZ4 518 aa17.82■□□□□ 0.44
VPS4A-202ENST00000562754 R3HCC1Q9Y3T6 440 aaKnown RBP17.82■□□□□ 0.44
VPS4A-202ENST00000562754 FHOD1Q9Y613 1164 aa17.82■□□□□ 0.44
VPS4A-202ENST00000562754 VWA8A3KMH1 1905 aa17.82■□□□□ 0.44
VPS4A-202ENST00000562754 NT5C1B-RDH14C9J2C7 533 aa17.81■□□□□ 0.44
VPS4A-202ENST00000562754 CLSTN1O94985 981 aa17.81■□□□□ 0.44
VPS4A-202ENST00000562754 LAG3P18627 525 aa17.81■□□□□ 0.44
VPS4A-202ENST00000562754 CDC25BP30305 580 aa17.81■□□□□ 0.44
VPS4A-202ENST00000562754 ASPAP45381 313 aa17.81■□□□□ 0.44
VPS4A-202ENST00000562754 BRCC3P46736 316 aa17.81■□□□□ 0.44
VPS4A-202ENST00000562754 MYO1EQ12965 1108 aa17.81■□□□□ 0.44
VPS4A-202ENST00000562754 ZNF667Q5HYK9 610 aa17.81■□□□□ 0.44
VPS4A-202ENST00000562754 WDR44Q5JSH3 913 aa17.81■□□□□ 0.44
VPS4A-202ENST00000562754 SPOUT1Q5T280 376 aaKnown RBP17.81■□□□□ 0.44
VPS4A-202ENST00000562754 IQCEQ6IPM2 695 aa17.81■□□□□ 0.44
VPS4A-202ENST00000562754 KCNT2Q6UVM3 1135 aa17.81■□□□□ 0.44
VPS4A-202ENST00000562754 CHRDL2Q6WN34 429 aa17.81■□□□□ 0.44
VPS4A-202ENST00000562754 SCARA5Q6ZMJ2 495 aa17.81■□□□□ 0.44
VPS4A-202ENST00000562754 NEK11Q8NG66 645 aa17.81■□□□□ 0.44
VPS4A-202ENST00000562754 KREMEN1Q96MU8 473 aa17.81■□□□□ 0.44
VPS4A-202ENST00000562754 ZNF558Q96NG5 402 aa17.81■□□□□ 0.44
VPS4A-202ENST00000562754 ARID3AQ99856 593 aa17.81■□□□□ 0.44
VPS4A-202ENST00000562754 TTYH3Q9C0H2 523 aa17.81■□□□□ 0.44
VPS4A-202ENST00000562754 SMYD3Q9H7B4 428 aa17.81■□□□□ 0.44
VPS4A-202ENST00000562754 NXF1Q9UBU9 619 aaKnown RBP17.81■□□□□ 0.44
VPS4A-202ENST00000562754 FAN1Q9Y2M0 1017 aa17.81■□□□□ 0.44
VPS4A-202ENST00000562754 LINC01553A4QN01 128 aa17.8■□□□□ 0.44
VPS4A-202ENST00000562754 KPNA7A9QM74 516 aa17.8■□□□□ 0.44
VPS4A-202ENST00000562754 I3L4J1 428 aa17.8■□□□□ 0.44
VPS4A-202ENST00000562754 UCHL3P15374 230 aa17.8■□□□□ 0.44
VPS4A-202ENST00000562754 WDR72Q3MJ13 1102 aa17.8■□□□□ 0.44
VPS4A-202ENST00000562754 TIGD5Q53EQ6 642 aa17.8■□□□□ 0.44
VPS4A-202ENST00000562754 SPECC1LQ69YQ0 1117 aa17.8■□□□□ 0.44
VPS4A-202ENST00000562754 RRAGAQ7L523 313 aa17.8■□□□□ 0.44
VPS4A-202ENST00000562754 TMC6Q7Z403 805 aa17.8■□□□□ 0.44
VPS4A-202ENST00000562754 TDHQ8IZJ6 230 aa17.8■□□□□ 0.44
VPS4A-202ENST00000562754 SLC39A11Q8N1S5 342 aa17.8■□□□□ 0.44
VPS4A-202ENST00000562754 PPM1KQ8N3J5 372 aa17.8■□□□□ 0.44
VPS4A-202ENST00000562754 CCDC150Q8NCX0 1101 aa17.8■□□□□ 0.44
VPS4A-202ENST00000562754 CLP1Q92989 425 aaKnown RBP17.8■□□□□ 0.44
VPS4A-202ENST00000562754 COLEC11Q9BWP8 271 aa17.8■□□□□ 0.44
VPS4A-202ENST00000562754 NAA15Q9BXJ9 866 aaKnown RBP17.8■□□□□ 0.44
VPS4A-202ENST00000562754 BCO2Q9BYV7 579 aa17.8■□□□□ 0.44
VPS4A-202ENST00000562754 SDCBP2Q9H190 292 aa17.8■□□□□ 0.44
VPS4A-202ENST00000562754 GDAP2Q9NXN4 497 aa17.8■□□□□ 0.44
VPS4A-202ENST00000562754 YBX2Q9Y2T7 364 aaKnown RBP17.8■□□□□ 0.44
VPS4A-202ENST00000562754 SNX9Q9Y5X1 595 aa17.8■□□□□ 0.44
VPS4A-202ENST00000562754 GYPCP04921 128 aa17.79■□□□□ 0.44
VPS4A-202ENST00000562754 ALDH2P05091 517 aa17.79■□□□□ 0.44
VPS4A-202ENST00000562754 PBX2P40425 430 aa17.79■□□□□ 0.44
VPS4A-202ENST00000562754 RAP1GAPP47736 663 aa17.79■□□□□ 0.44
VPS4A-202ENST00000562754 POLR2FP61218 127 aaKnown RBP17.79■□□□□ 0.44
VPS4A-202ENST00000562754 TNNC1P63316 161 aa17.79■□□□□ 0.44
VPS4A-202ENST00000562754 CUL2Q13617 745 aa17.79■□□□□ 0.44
VPS4A-202ENST00000562754 LIMS2Q7Z4I7 341 aa17.79■□□□□ 0.44
VPS4A-202ENST00000562754 SPRED2Q7Z698 418 aa17.79■□□□□ 0.44
VPS4A-202ENST00000562754 UBR7Q8N806 425 aa17.79■□□□□ 0.44
VPS4A-202ENST00000562754 SUSD3Q96L08 255 aa17.79■□□□□ 0.44
VPS4A-202ENST00000562754 SENP8Q96LD8 212 aa17.79■□□□□ 0.44
VPS4A-202ENST00000562754 VN1R3Q9BXE9 311 aa17.79■□□□□ 0.44
VPS4A-202ENST00000562754 UBE2TQ9NPD8 197 aaPredicted RBP17.79■□□□□ 0.44
VPS4A-202ENST00000562754 DNAJC12Q9UKB3 198 aa17.79■□□□□ 0.44
VPS4A-202ENST00000562754 ADAM28Q9UKQ2 775 aa17.79■□□□□ 0.44
VPS4A-202ENST00000562754 L1RE1Q9UN81 338 aa17.79■□□□□ 0.44
VPS4A-202ENST00000562754 PCDHA11Q9Y5I1 949 aa17.79■□□□□ 0.44
VPS4A-202ENST00000562754 PLXNA4Q9HCM2 1894 aa17.79■□□□□ 0.44
VPS4A-202ENST00000562754 RNF225M0QZC1 329 aaPredicted RBP17.78■□□□□ 0.44
VPS4A-202ENST00000562754 EFEMP2O95967 443 aa17.78■□□□□ 0.44
VPS4A-202ENST00000562754 CA3P07451 260 aa17.78■□□□□ 0.44
VPS4A-202ENST00000562754 TRIM21P19474 475 aaKnown RBP17.78■□□□□ 0.44
VPS4A-202ENST00000562754 ALDH7A1P49419 539 aaKnown RBP17.78■□□□□ 0.44
VPS4A-202ENST00000562754 GCNT1Q02742 428 aa17.78■□□□□ 0.44
VPS4A-202ENST00000562754 TBX2Q13207 712 aaPredicted RBP17.78■□□□□ 0.44
VPS4A-202ENST00000562754 SOWAHAQ2M3V2 549 aa17.78■□□□□ 0.44
VPS4A-202ENST00000562754 FIGNQ5HY92 759 aa17.78■□□□□ 0.44
VPS4A-202ENST00000562754 ARHGAP30Q7Z6I6 1101 aaPredicted RBP17.78■□□□□ 0.44
VPS4A-202ENST00000562754 IGSF21Q96ID5 467 aa17.78■□□□□ 0.44
VPS4A-202ENST00000562754 PBX4Q9BYU1 374 aa17.78■□□□□ 0.44
VPS4A-202ENST00000562754 NLRC4Q9NPP4 1024 aa17.78■□□□□ 0.44
VPS4A-202ENST00000562754 CEP72Q9P209 647 aa17.78■□□□□ 0.44
VPS4A-202ENST00000562754 FBXL5Q9UKA1 691 aa17.78■□□□□ 0.44
VPS4A-202ENST00000562754 HSFX4A0A1B0GTS1 333 aaPredicted RBP17.77■□□□□ 0.44
VPS4A-202ENST00000562754 HSFX3A0A1B0GWH4 333 aaPredicted RBP17.77■□□□□ 0.44
VPS4A-202ENST00000562754 M0QZQ0 153 aa17.77■□□□□ 0.44
VPS4A-202ENST00000562754 CYB561D2O14569 222 aa17.77■□□□□ 0.44
VPS4A-202ENST00000562754 TADA2AO75478 443 aa17.77■□□□□ 0.44
VPS4A-202ENST00000562754 WEE2P0C1S8 567 aa17.77■□□□□ 0.44
VPS4A-202ENST00000562754 P4HA1P13674 534 aa17.77■□□□□ 0.44
VPS4A-202ENST00000562754 RFX1P22670 979 aa17.77■□□□□ 0.44
VPS4A-202ENST00000562754 PAX3P23760 479 aa17.77■□□□□ 0.44
Retrieved 100 of 20,778 RNA–protein pairs in 19.6 ms