RNA–Protein interactions for RNA: ENST00000562626.1

CLK3-208, Transcript of CDC like kinase 3, humanhuman

TSL 2

Gene CLK3, Length 812 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-208ENST00000562626 VN1R2Q8NFZ6 395 aa10.56□□□□□ -0.72
CLK3-208ENST00000562626 TAS1R2Q8TE23 839 aa10.56□□□□□ -0.72
CLK3-208ENST00000562626 SYAP1Q96A49 352 aaPredicted RBP10.56□□□□□ -0.72
CLK3-208ENST00000562626 MRPL38Q96DV4 380 aaKnown RBP10.56□□□□□ -0.72
CLK3-208ENST00000562626 DDX27Q96GQ7 796 aaKnown RBP10.56□□□□□ -0.72
CLK3-208ENST00000562626 SUSD3Q96L08 255 aa10.56□□□□□ -0.72
CLK3-208ENST00000562626 CNOT6LQ96LI5 555 aaKnown RBP10.56□□□□□ -0.72
CLK3-208ENST00000562626 FNBP1Q96RU3 617 aa10.56□□□□□ -0.72
CLK3-208ENST00000562626 TSPAN18Q96SJ8 248 aa10.56□□□□□ -0.72
CLK3-208ENST00000562626 TCF25Q9BQ70 676 aa10.56□□□□□ -0.72
CLK3-208ENST00000562626 PI4K2AQ9BTU6 479 aa10.56□□□□□ -0.72
CLK3-208ENST00000562626 XYLT2Q9H1B5 865 aa10.56□□□□□ -0.72
CLK3-208ENST00000562626 ANO10Q9NW15 660 aa10.56□□□□□ -0.72
CLK3-208ENST00000562626 POLIQ9UNA4 740 aa10.56□□□□□ -0.72
CLK3-208ENST00000562626 LZTS1Q9Y250 596 aa10.56□□□□□ -0.72
CLK3-208ENST00000562626 DOCK8Q8NF50 2099 aa10.56□□□□□ -0.72
CLK3-208ENST00000562626 C2orf71A6NGG8 1288 aa10.55□□□□□ -0.72
CLK3-208ENST00000562626 M0QZQ0 153 aa10.55□□□□□ -0.72
CLK3-208ENST00000562626 PER2O15055 1255 aa10.55□□□□□ -0.72
CLK3-208ENST00000562626 LINC01565O15544 149 aa10.55□□□□□ -0.72
CLK3-208ENST00000562626 XPOTO43592 962 aaKnown RBP10.55□□□□□ -0.72
CLK3-208ENST00000562626 HLA-DRAP01903 254 aa10.55□□□□□ -0.72
CLK3-208ENST00000562626 TNNC2P02585 160 aa10.55□□□□□ -0.72
CLK3-208ENST00000562626 FOSL2P15408 326 aa10.55□□□□□ -0.72
CLK3-208ENST00000562626 GLUD2P49448 558 aa10.55□□□□□ -0.72
CLK3-208ENST00000562626 CDR1P51861 262 aa10.55□□□□□ -0.72
CLK3-208ENST00000562626 MARSP56192 900 aaKnown RBP10.55□□□□□ -0.72
CLK3-208ENST00000562626 DSG1Q02413 1049 aa10.55□□□□□ -0.72
CLK3-208ENST00000562626 UBE3AQ05086 875 aa10.55□□□□□ -0.72
CLK3-208ENST00000562626 CCDC85BQ15834 202 aaPredicted RBP10.55□□□□□ -0.72
CLK3-208ENST00000562626 CCDC142Q17RM4 750 aa10.55□□□□□ -0.72
CLK3-208ENST00000562626 DUOXA2Q1HG44 320 aa10.55□□□□□ -0.72
CLK3-208ENST00000562626 SKOR2Q2VWA4 1001 aaPredicted RBP10.55□□□□□ -0.72
CLK3-208ENST00000562626 CCDC40Q4G0X9 1142 aa10.55□□□□□ -0.72
CLK3-208ENST00000562626 TCEAL5Q5H9L2 206 aa10.55□□□□□ -0.72
CLK3-208ENST00000562626 DCAF17Q5H9S7 520 aaPredicted RBP10.55□□□□□ -0.72
CLK3-208ENST00000562626 CDKAL1Q5VV42 579 aa10.55□□□□□ -0.72
CLK3-208ENST00000562626 SPOPLQ6IQ16 392 aa10.55□□□□□ -0.72
CLK3-208ENST00000562626 TMC7Q7Z402 723 aa10.55□□□□□ -0.72
CLK3-208ENST00000562626 FRMD5Q7Z6J6 570 aa10.55□□□□□ -0.72
CLK3-208ENST00000562626 OSTM1Q86WC4 334 aa10.55□□□□□ -0.72
CLK3-208ENST00000562626 GLYCTKQ8IVS8 523 aa10.55□□□□□ -0.72
CLK3-208ENST00000562626 DHX40Q8IX18 779 aaKnown RBP10.55□□□□□ -0.72
CLK3-208ENST00000562626 MICALL1Q8N3F8 863 aa10.55□□□□□ -0.72
CLK3-208ENST00000562626 AOPEPQ8N6M6 819 aa10.55□□□□□ -0.72
CLK3-208ENST00000562626 LNX1Q8TBB1 728 aaPredicted RBP10.55□□□□□ -0.72
CLK3-208ENST00000562626 ANKRD36BP1Q96IX9 119 aa10.55□□□□□ -0.72
CLK3-208ENST00000562626 SENP8Q96LD8 212 aa10.55□□□□□ -0.72
CLK3-208ENST00000562626 RTP3Q9BQQ7 232 aa10.55□□□□□ -0.72
CLK3-208ENST00000562626 LMAN2LQ9H0V9 348 aa10.55□□□□□ -0.72
CLK3-208ENST00000562626 SDCBP2Q9H190 292 aa10.55□□□□□ -0.72
CLK3-208ENST00000562626 ENTPD7Q9NQZ7 604 aa10.55□□□□□ -0.72
CLK3-208ENST00000562626 FANCLQ9NW38 375 aa10.55□□□□□ -0.72
CLK3-208ENST00000562626 ARMCX3Q9UH62 379 aaPredicted RBP10.55□□□□□ -0.72
CLK3-208ENST00000562626 ITGA11Q9UKX5 1188 aa10.55□□□□□ -0.72
CLK3-208ENST00000562626 NFE2L3Q9Y4A8 694 aa10.55□□□□□ -0.72
CLK3-208ENST00000562626 SF3B1O75533 1304 aaKnown RBP eCLIP10.55□□□□□ -0.72
CLK3-208ENST00000562626 C5orf42Q9H799 3197 aa10.55□□□□□ -0.72
CLK3-208ENST00000562626 ZC3H11BA0A1B0GUI2 810 aaPredicted RBP10.54□□□□□ -0.72
CLK3-208ENST00000562626 IKBKBO14920 756 aa10.54□□□□□ -0.72
CLK3-208ENST00000562626 CXCL14O95715 111 aa10.54□□□□□ -0.72
CLK3-208ENST00000562626 CNPP09543 421 aaKnown RBP10.54□□□□□ -0.72
CLK3-208ENST00000562626 KRT13P13646 458 aa10.54□□□□□ -0.72
CLK3-208ENST00000562626 TAF6P49848 677 aa10.54□□□□□ -0.72
CLK3-208ENST00000562626 RBP5P82980 135 aa10.54□□□□□ -0.72
CLK3-208ENST00000562626 KRT17Q04695 432 aa10.54□□□□□ -0.72
CLK3-208ENST00000562626 HYAL1Q12794 435 aa10.54□□□□□ -0.72
CLK3-208ENST00000562626 BIRC3Q13489 604 aa10.54□□□□□ -0.72
CLK3-208ENST00000562626 IQCB1Q15051 598 aa10.54□□□□□ -0.72
CLK3-208ENST00000562626 VARS2Q5ST30 1063 aaKnown RBP10.54□□□□□ -0.72
CLK3-208ENST00000562626 TCERG1LQ5VWI1 586 aa10.54□□□□□ -0.72
CLK3-208ENST00000562626 PDZRN4Q6ZMN7 1036 aaPredicted RBP10.54□□□□□ -0.72
CLK3-208ENST00000562626 RBM23Q86U06 439 aaKnown RBP10.54□□□□□ -0.72
CLK3-208ENST00000562626 CEP57Q86XR8 500 aa10.54□□□□□ -0.72
CLK3-208ENST00000562626 MRPL43Q8N983 215 aaKnown RBP10.54□□□□□ -0.72
CLK3-208ENST00000562626 ENOX1Q8TC92 643 aaKnown RBP10.54□□□□□ -0.72
CLK3-208ENST00000562626 CACTINQ8WUQ7 758 aaKnown RBP10.54□□□□□ -0.72
CLK3-208ENST00000562626 RIN2Q8WYP3 895 aaPredicted RBP10.54□□□□□ -0.72
CLK3-208ENST00000562626 HPDLQ96IR7 371 aa10.54□□□□□ -0.72
CLK3-208ENST00000562626 TMEM209Q96SK2 561 aa10.54□□□□□ -0.72
CLK3-208ENST00000562626 GAS2L1Q99501 681 aaPredicted RBP10.54□□□□□ -0.72
CLK3-208ENST00000562626 CLSTN3Q9BQT9 956 aa10.54□□□□□ -0.72
CLK3-208ENST00000562626 APOBEC3GQ9HC16 384 aaKnown RBP10.54□□□□□ -0.72
CLK3-208ENST00000562626 DACH1Q9UI36 760 aa10.54□□□□□ -0.72
CLK3-208ENST00000562626 L1RE1Q9UN81 338 aa10.54□□□□□ -0.72
CLK3-208ENST00000562626 NUB1Q9Y5A7 615 aa10.54□□□□□ -0.72
CLK3-208ENST00000562626 KPNA7A9QM74 516 aa10.53□□□□□ -0.72
CLK3-208ENST00000562626 CYB561D2O14569 222 aa10.53□□□□□ -0.72
CLK3-208ENST00000562626 TEX28O15482 410 aa10.53□□□□□ -0.72
CLK3-208ENST00000562626 TBC1D4O60343 1298 aa10.53□□□□□ -0.72
CLK3-208ENST00000562626 CLASP2O75122 1294 aaKnown RBP10.53□□□□□ -0.72
CLK3-208ENST00000562626 VNN2O95498 520 aa10.53□□□□□ -0.72
CLK3-208ENST00000562626 GLP2RO95838 553 aa10.53□□□□□ -0.72
CLK3-208ENST00000562626 OR4Q2P0C623 313 aa10.53□□□□□ -0.72
CLK3-208ENST00000562626 CCDC192P0DO97 292 aa10.53□□□□□ -0.72
CLK3-208ENST00000562626 ATP1A3P13637 1013 aa10.53□□□□□ -0.72
CLK3-208ENST00000562626 CA8P35219 290 aa10.53□□□□□ -0.72
CLK3-208ENST00000562626 RAP1GAPP47736 663 aa10.53□□□□□ -0.72
CLK3-208ENST00000562626 NRIP1P48552 1158 aa10.53□□□□□ -0.72
CLK3-208ENST00000562626 FMO5P49326 533 aa10.53□□□□□ -0.72
Retrieved 100 of 20,778 RNA–protein pairs in 110.8 ms