RNA–Protein interactions for RNA: ENST00000562258.5

VPS39-205, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 2

Gene VPS39, Length 4,160 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-205ENST00000562258 MDH1BQ5I0G3 518 aa9.8□□□□□ -0.84
VPS39-205ENST00000562258 ZNF697Q5TEC3 545 aa9.8□□□□□ -0.84
VPS39-205ENST00000562258 C17orf99Q6UX52 265 aa9.8□□□□□ -0.84
VPS39-205ENST00000562258 KDELC2Q7Z4H8 507 aa9.8□□□□□ -0.84
VPS39-205ENST00000562258 CCDC170Q8IYT3 715 aa9.8□□□□□ -0.84
VPS39-205ENST00000562258 ZNF710Q8N1W2 664 aa9.8□□□□□ -0.84
VPS39-205ENST00000562258 PGBD3Q8N328 593 aa9.8□□□□□ -0.84
VPS39-205ENST00000562258 FIBCD1Q8N539 461 aa9.8□□□□□ -0.84
VPS39-205ENST00000562258 TTC39CQ8N584 583 aa9.8□□□□□ -0.84
VPS39-205ENST00000562258 C1orf131Q8NDD1 294 aaKnown RBP9.8□□□□□ -0.84
VPS39-205ENST00000562258 ZNF564Q8TBZ8 553 aaPredicted RBP9.8□□□□□ -0.84
VPS39-205ENST00000562258 GOLPH3Q9H4A6 298 aa9.8□□□□□ -0.84
VPS39-205ENST00000562258 IFT122Q9HBG6 1241 aa9.8□□□□□ -0.84
VPS39-205ENST00000562258 CISHQ9NSE2 258 aa9.8□□□□□ -0.84
VPS39-205ENST00000562258 FAM120AQ9NZB2 1118 aaKnown RBP eCLIP9.8□□□□□ -0.84
VPS39-205ENST00000562258 LIMA1Q9UHB6 759 aaKnown RBP9.8□□□□□ -0.84
VPS39-205ENST00000562258 TFR2Q9UP52 801 aa9.8□□□□□ -0.84
VPS39-205ENST00000562258 SCINQ9Y6U3 715 aa9.8□□□□□ -0.84
VPS39-205ENST00000562258 MROH7Q68CQ1 1323 aa9.79□□□□□ -0.84
VPS39-205ENST00000562258 MAP3K7CLP57077 242 aa9.79□□□□□ -0.84
VPS39-205ENST00000562258 TSTA3Q13630 321 aaPredicted RBP9.79□□□□□ -0.84
VPS39-205ENST00000562258 ZNF280DQ6N043 979 aa9.79□□□□□ -0.84
VPS39-205ENST00000562258 GPR161Q8N6U8 529 aaKnown RBP9.79□□□□□ -0.84
VPS39-205ENST00000562258 PARD3BQ8TEW8 1205 aa9.79□□□□□ -0.84
VPS39-205ENST00000562258 SKA2Q8WVK7 121 aaPredicted RBP9.79□□□□□ -0.84
VPS39-205ENST00000562258 DNAJC19Q96DA6 116 aa9.79□□□□□ -0.84
VPS39-205ENST00000562258 UBE2OQ9C0C9 1292 aaKnown RBP9.79□□□□□ -0.84
VPS39-205ENST00000562258 FEZ2Q9UHY8 353 aaPredicted RBP9.79□□□□□ -0.84
VPS39-205ENST00000562258 MOSPD1Q9UJG1 213 aa9.79□□□□□ -0.84
VPS39-205ENST00000562258 BUB1BO60566 1050 aaPredicted RBP9.79□□□□□ -0.84
VPS39-205ENST00000562258 HSF2BPO75031 334 aa9.79□□□□□ -0.84
VPS39-205ENST00000562258 CALCAP01258 141 aa9.79□□□□□ -0.84
VPS39-205ENST00000562258 NFICP08651 508 aa9.79□□□□□ -0.84
VPS39-205ENST00000562258 DLG4P78352 724 aa9.79□□□□□ -0.84
VPS39-205ENST00000562258 BASP1P80723 227 aaKnown RBP9.79□□□□□ -0.84
VPS39-205ENST00000562258 ADCY1Q08828 1119 aa9.79□□□□□ -0.84
VPS39-205ENST00000562258 ARSHQ5FYA8 562 aa9.79□□□□□ -0.84
VPS39-205ENST00000562258 GSDMBQ8TAX9 411 aa9.79□□□□□ -0.84
VPS39-205ENST00000562258 GDAP1Q8TB36 358 aa9.79□□□□□ -0.84
VPS39-205ENST00000562258 SLC7A14Q8TBB6 771 aa9.79□□□□□ -0.84
VPS39-205ENST00000562258 BSNDQ8WZ55 320 aa9.79□□□□□ -0.84
VPS39-205ENST00000562258 RNPC3Q96LT9 517 aaKnown RBP9.79□□□□□ -0.84
VPS39-205ENST00000562258 PRIMPOLQ96LW4 560 aa9.79□□□□□ -0.84
VPS39-205ENST00000562258 IRX2Q9BZI1 471 aaPredicted RBP9.79□□□□□ -0.84
VPS39-205ENST00000562258 VPS37BQ9H9H4 285 aa9.79□□□□□ -0.84
VPS39-205ENST00000562258 DNAJC17Q9NVM6 304 aaKnown RBP9.79□□□□□ -0.84
VPS39-205ENST00000562258 ZC3H11BA0A1B0GUI2 810 aaPredicted RBP9.79□□□□□ -0.84
VPS39-205ENST00000562258 DARSP14868 501 aaKnown RBP9.79□□□□□ -0.84
VPS39-205ENST00000562258 GBP1P32455 592 aa9.79□□□□□ -0.84
VPS39-205ENST00000562258 BRCC3P46736 316 aa9.79□□□□□ -0.84
VPS39-205ENST00000562258 RAB27AP51159 221 aa9.79□□□□□ -0.84
VPS39-205ENST00000562258 CDH6P55285 790 aa9.79□□□□□ -0.84
VPS39-205ENST00000562258 E2F4Q16254 413 aa9.79□□□□□ -0.84
VPS39-205ENST00000562258 HS1BP3Q53T59 392 aa9.79□□□□□ -0.84
VPS39-205ENST00000562258 KLHDC7AQ5VTJ3 777 aa9.79□□□□□ -0.84
VPS39-205ENST00000562258 PDXDC1Q6P996 788 aa9.79□□□□□ -0.84
VPS39-205ENST00000562258 MAP4K3Q8IVH8 894 aa9.79□□□□□ -0.84
VPS39-205ENST00000562258 ZNF507Q8TCN5 953 aa9.79□□□□□ -0.84
VPS39-205ENST00000562258 GIPC2Q8TF65 315 aa9.79□□□□□ -0.84
VPS39-205ENST00000562258 TSC1Q92574 1164 aa9.79□□□□□ -0.84
VPS39-205ENST00000562258 SENP8Q96LD8 212 aa9.79□□□□□ -0.84
VPS39-205ENST00000562258 FGFBP2Q9BYJ0 223 aa9.79□□□□□ -0.84
VPS39-205ENST00000562258 TMEM117Q9H0C3 514 aa9.79□□□□□ -0.84
VPS39-205ENST00000562258 KCNK9Q9NPC2 374 aa9.79□□□□□ -0.84
VPS39-205ENST00000562258 ACP6Q9NPH0 428 aa9.79□□□□□ -0.84
VPS39-205ENST00000562258 ASNSD1Q9NWL6 643 aa9.79□□□□□ -0.84
VPS39-205ENST00000562258 PALMO75781 387 aa9.78□□□□□ -0.84
VPS39-205ENST00000562258 TCP1P17987 556 aaKnown RBP9.78□□□□□ -0.84
VPS39-205ENST00000562258 MAN1A1P33908 653 aa9.78□□□□□ -0.84
VPS39-205ENST00000562258 ZNF792Q3KQV3 632 aa9.78□□□□□ -0.84
VPS39-205ENST00000562258 NOMO2Q5JPE7 1267 aa9.78□□□□□ -0.84
VPS39-205ENST00000562258 MSL3Q8N5Y2 521 aaKnown RBP9.78□□□□□ -0.84
VPS39-205ENST00000562258 C4orf32Q8N8J7 132 aa9.78□□□□□ -0.84
VPS39-205ENST00000562258 KRT12Q99456 494 aa9.78□□□□□ -0.84
VPS39-205ENST00000562258 CGRRF1Q99675 332 aa9.78□□□□□ -0.84
VPS39-205ENST00000562258 SLC8A2Q9UPR5 921 aa9.78□□□□□ -0.84
VPS39-205ENST00000562258 IRS2Q9Y4H2 1338 aa9.78□□□□□ -0.84
VPS39-205ENST00000562258 KPNA7A9QM74 516 aa9.78□□□□□ -0.84
VPS39-205ENST00000562258 OPLAHO14841 1288 aa9.78□□□□□ -0.84
VPS39-205ENST00000562258 MCF2LO15068 1137 aa9.78□□□□□ -0.84
VPS39-205ENST00000562258 MAP3K6O95382 1288 aa9.78□□□□□ -0.84
VPS39-205ENST00000562258 PLEKP08567 350 aaPredicted RBP9.78□□□□□ -0.84
VPS39-205ENST00000562258 WSCD1Q658N2 575 aa9.78□□□□□ -0.84
VPS39-205ENST00000562258 FBXO32Q969P5 355 aa9.78□□□□□ -0.84
VPS39-205ENST00000562258 ERLEC1Q96DZ1 483 aa9.78□□□□□ -0.84
VPS39-205ENST00000562258 MCEEQ96PE7 176 aa9.78□□□□□ -0.84
VPS39-205ENST00000562258 F5P12259 2224 aa9.78□□□□□ -0.84
VPS39-205ENST00000562258 A0A1B0GTH6 734 aa9.78□□□□□ -0.84
VPS39-205ENST00000562258 PODXLO00592 558 aa9.78□□□□□ -0.84
VPS39-205ENST00000562258 FGFR1P11362 822 aa9.78□□□□□ -0.84
VPS39-205ENST00000562258 PON1P27169 355 aa9.78□□□□□ -0.84
VPS39-205ENST00000562258 CLCN1P35523 988 aa9.78□□□□□ -0.84
VPS39-205ENST00000562258 NNMTP40261 264 aa9.78□□□□□ -0.84
VPS39-205ENST00000562258 CLK2P49760 499 aaKnown RBP9.78□□□□□ -0.84
VPS39-205ENST00000562258 NDST1P52848 882 aa9.78□□□□□ -0.84
VPS39-205ENST00000562258 GALCP54803 685 aa9.78□□□□□ -0.84
VPS39-205ENST00000562258 SEMA3FQ13275 785 aa9.78□□□□□ -0.84
VPS39-205ENST00000562258 TRIM60Q495X7 471 aa9.78□□□□□ -0.84
VPS39-205ENST00000562258 ZNF618Q5T7W0 954 aa9.78□□□□□ -0.84
VPS39-205ENST00000562258 LLGL2Q6P1M3 1020 aa9.78□□□□□ -0.84
Retrieved 100 of 20,778 RNA–protein pairs in 41.1 ms