RNA–Protein interactions for RNA: ENST00000560202.1

USP3-218, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 5

Gene USP3, Length 1,681 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-218ENST00000560202 NXF1Q9UBU9 619 aaKnown RBP12.03□□□□□ -0.48
USP3-218ENST00000560202 ANO9A1A5B4 782 aa12.03□□□□□ -0.48
USP3-218ENST00000560202 USP27XA6NNY8 438 aa12.03□□□□□ -0.48
USP3-218ENST00000560202 CYP26A1O43174 497 aa12.03□□□□□ -0.48
USP3-218ENST00000560202 CCP110O43303 1012 aa12.03□□□□□ -0.48
USP3-218ENST00000560202 ZSCAN12O43309 604 aa12.03□□□□□ -0.48
USP3-218ENST00000560202 EOMESO95936 686 aa12.03□□□□□ -0.48
USP3-218ENST00000560202 CXCL10P02778 98 aa12.03□□□□□ -0.48
USP3-218ENST00000560202 CCDC175P0C221 793 aa12.03□□□□□ -0.48
USP3-218ENST00000560202 KRT5P13647 590 aa12.03□□□□□ -0.48
USP3-218ENST00000560202 ASPAP45381 313 aa12.03□□□□□ -0.48
USP3-218ENST00000560202 AFF1P51825 1210 aaKnown RBP12.03□□□□□ -0.48
USP3-218ENST00000560202 SOX4Q06945 474 aaPredicted RBP12.03□□□□□ -0.48
USP3-218ENST00000560202 MYO1EQ12965 1108 aa12.03□□□□□ -0.48
USP3-218ENST00000560202 C9orf57Q5W0N0 161 aa12.03□□□□□ -0.48
USP3-218ENST00000560202 LRRC52Q8N7C0 313 aa12.03□□□□□ -0.48
USP3-218ENST00000560202 SLC38A7Q9NVC3 462 aa12.03□□□□□ -0.48
USP3-218ENST00000560202 MIOSQ9NXC5 875 aa12.03□□□□□ -0.48
USP3-218ENST00000560202 POLIQ9UNA4 740 aa12.03□□□□□ -0.48
USP3-218ENST00000560202 REXO2Q9Y3B8 237 aaKnown RBP12.03□□□□□ -0.48
USP3-218ENST00000560202 RALGAPA2Q2PPJ7 1873 aa12.02□□□□□ -0.48
USP3-218ENST00000560202 PIRO00625 290 aa12.02□□□□□ -0.49
USP3-218ENST00000560202 ENPP3O14638 875 aa12.02□□□□□ -0.49
USP3-218ENST00000560202 PPEF2O14830 753 aa12.02□□□□□ -0.49
USP3-218ENST00000560202 IPO7O95373 1038 aaKnown RBP12.02□□□□□ -0.49
USP3-218ENST00000560202 LCA5LO95447 670 aa12.02□□□□□ -0.49
USP3-218ENST00000560202 THP07101 528 aa12.02□□□□□ -0.49
USP3-218ENST00000560202 P4HA1P13674 534 aa12.02□□□□□ -0.49
USP3-218ENST00000560202 EN2P19622 333 aaPredicted RBP12.02□□□□□ -0.49
USP3-218ENST00000560202 ANXA13P27216 316 aa12.02□□□□□ -0.49
USP3-218ENST00000560202 SCNN1GP51170 649 aa12.02□□□□□ -0.49
USP3-218ENST00000560202 KRT83P78385 493 aa12.02□□□□□ -0.49
USP3-218ENST00000560202 GFPT1Q06210 699 aaPredicted RBP12.02□□□□□ -0.49
USP3-218ENST00000560202 SPA17Q15506 151 aa12.02□□□□□ -0.49
USP3-218ENST00000560202 SCARA5Q6ZMJ2 495 aa12.02□□□□□ -0.49
USP3-218ENST00000560202 VPS36Q86VN1 386 aa12.02□□□□□ -0.49
USP3-218ENST00000560202 UBR7Q8N806 425 aa12.02□□□□□ -0.49
USP3-218ENST00000560202 PPP1R13BQ96KQ4 1090 aa12.02□□□□□ -0.49
USP3-218ENST00000560202 SYT11Q9BT88 431 aa12.02□□□□□ -0.49
USP3-218ENST00000560202 HNRNPUL1Q9BUJ2 856 aaKnown RBP eCLIP12.02□□□□□ -0.49
USP3-218ENST00000560202 BCO2Q9BYV7 579 aa12.02□□□□□ -0.49
USP3-218ENST00000560202 GOLGA2P5Q9HBQ8 144 aa12.02□□□□□ -0.49
USP3-218ENST00000560202 ADAMTS1Q9UHI8 967 aa12.02□□□□□ -0.49
USP3-218ENST00000560202 CNTN6Q9UQ52 1028 aa12.02□□□□□ -0.49
USP3-218ENST00000560202 PCDHB4Q9Y5E5 795 aa12.02□□□□□ -0.49
USP3-218ENST00000560202 GTF3C5Q9Y5Q8 519 aaPredicted RBP12.02□□□□□ -0.49
USP3-218ENST00000560202 A0A087X0T9 212 aa12.01□□□□□ -0.49
USP3-218ENST00000560202 ZNF263O14978 683 aa12.01□□□□□ -0.49
USP3-218ENST00000560202 WEE2P0C1S8 567 aa12.01□□□□□ -0.49
USP3-218ENST00000560202 FAM228BP0C875 321 aa12.01□□□□□ -0.49
USP3-218ENST00000560202 CD58P19256 250 aa12.01□□□□□ -0.49
USP3-218ENST00000560202 LRPAP1P30533 357 aa12.01□□□□□ -0.49
USP3-218ENST00000560202 CYP27A1Q02318 531 aa12.01□□□□□ -0.49
USP3-218ENST00000560202 NAB2Q15742 525 aa12.01□□□□□ -0.49
USP3-218ENST00000560202 SLC18A3Q16572 532 aa12.01□□□□□ -0.49
USP3-218ENST00000560202 TCTN1Q2MV58 587 aa12.01□□□□□ -0.49
USP3-218ENST00000560202 SMYD5Q6GMV2 418 aa12.01□□□□□ -0.49
USP3-218ENST00000560202 TMEM270Q6UE05 265 aa12.01□□□□□ -0.49
USP3-218ENST00000560202 SLC47A2Q86VL8 602 aa12.01□□□□□ -0.49
USP3-218ENST00000560202 REXO1L1PQ8IX06 675 aa12.01□□□□□ -0.49
USP3-218ENST00000560202 EPS8L1Q8TE68 723 aa12.01□□□□□ -0.49
USP3-218ENST00000560202 ACP6Q9NPH0 428 aa12.01□□□□□ -0.49
USP3-218ENST00000560202 CISHQ9NSE2 258 aa12.01□□□□□ -0.49
USP3-218ENST00000560202 CITO14578 2027 aa12.01□□□□□ -0.49
USP3-218ENST00000560202 DDX3XO00571 662 aaKnown RBP eCLIP12□□□□□ -0.49
USP3-218ENST00000560202 INPPL1O15357 1258 aa12□□□□□ -0.49
USP3-218ENST00000560202 POMCP01189 267 aa12□□□□□ -0.49
USP3-218ENST00000560202 CYP11B1P15538 503 aa12□□□□□ -0.49
USP3-218ENST00000560202 PNPLA4P41247 253 aa12□□□□□ -0.49
USP3-218ENST00000560202 BPIFB4P59827 614 aa12□□□□□ -0.49
USP3-218ENST00000560202 YWHAEP62258 255 aaKnown RBP12□□□□□ -0.49
USP3-218ENST00000560202 TNNC1P63316 161 aa12□□□□□ -0.49
USP3-218ENST00000560202 GABPB1Q06547 395 aaPredicted RBP12□□□□□ -0.49
USP3-218ENST00000560202 BMS1Q14692 1282 aaKnown RBP12□□□□□ -0.49
USP3-218ENST00000560202 GLB1LQ6UWU2 654 aa12□□□□□ -0.49
USP3-218ENST00000560202 DEFB128Q7Z7B8 93 aa12□□□□□ -0.49
USP3-218ENST00000560202 UBE2Q1Q7Z7E8 422 aa12□□□□□ -0.49
USP3-218ENST00000560202 NOP9Q86U38 636 aaKnown RBP12□□□□□ -0.49
USP3-218ENST00000560202 RBBP8NLQ8NC74 664 aaPredicted RBP12□□□□□ -0.49
USP3-218ENST00000560202 SLC20A1Q8WUM9 679 aa12□□□□□ -0.49
USP3-218ENST00000560202 ZNF560Q96MR9 790 aa12□□□□□ -0.49
USP3-218ENST00000560202 AGPAT1Q99943 283 aa12□□□□□ -0.49
USP3-218ENST00000560202 SDCBP2Q9H190 292 aa12□□□□□ -0.49
USP3-218ENST00000560202 ELAC1Q9H777 363 aaKnown RBP12□□□□□ -0.49
USP3-218ENST00000560202 SMYD3Q9H7B4 428 aa12□□□□□ -0.49
USP3-218ENST00000560202 CYP3A43Q9HB55 503 aa12□□□□□ -0.49
USP3-218ENST00000560202 PRDM5Q9NQX1 630 aaPredicted RBP12□□□□□ -0.49
USP3-218ENST00000560202 TMEM161AQ9NX61 479 aa12□□□□□ -0.49
USP3-218ENST00000560202 NOCTQ9UK39 431 aaKnown RBP12□□□□□ -0.49
USP3-218ENST00000560202 INPP5FQ9Y2H2 1132 aa12□□□□□ -0.49
USP3-218ENST00000560202 KIAA0355O15063 1070 aa12□□□□□ -0.49
USP3-218ENST00000560202 TIMP1P01033 207 aa12□□□□□ -0.49
USP3-218ENST00000560202 TNFAIP3P21580 790 aa12□□□□□ -0.49
USP3-218ENST00000560202 RFC2P35250 354 aa12□□□□□ -0.49
USP3-218ENST00000560202 RAP1GAPP47736 663 aa12□□□□□ -0.49
USP3-218ENST00000560202 TAF6P49848 677 aa12□□□□□ -0.49
USP3-218ENST00000560202 PDE6CP51160 858 aa12□□□□□ -0.49
USP3-218ENST00000560202 ZNF132P52740 706 aa12□□□□□ -0.49
USP3-218ENST00000560202 CDH8P55286 799 aa12□□□□□ -0.49
USP3-218ENST00000560202 GRIK3Q13003 919 aa12□□□□□ -0.49
Retrieved 100 of 20,778 RNA–protein pairs in 25.4 ms