RNA–Protein interactions for RNA: ENST00000559556.5

TPM1-220, Transcript of tropomyosin 1, humanhuman

APPRIS ALT1 TSL 2 BASIC

Gene TPM1, Length 977 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TPM1-220ENST00000559556 TRPV5Q9NQA5 729 aa14.29□□□□□ -0.12
TPM1-220ENST00000559556 ZSCAN32Q9NX65 697 aa14.29□□□□□ -0.12
TPM1-220ENST00000559556 KCND2Q9NZV8 630 aa14.29□□□□□ -0.12
TPM1-220ENST00000559556 TUBGCP4Q9UGJ1 667 aa14.29□□□□□ -0.12
TPM1-220ENST00000559556 PCDHB8Q9UN66 801 aa14.29□□□□□ -0.12
TPM1-220ENST00000559556 GTF3C5Q9Y5Q8 519 aaPredicted RBP14.29□□□□□ -0.12
TPM1-220ENST00000559556 TTC26A0AVF1 554 aa14.28□□□□□ -0.12
TPM1-220ENST00000559556 SFI1A8K8P3 1242 aa14.28□□□□□ -0.12
TPM1-220ENST00000559556 M0QZQ0 153 aa14.28□□□□□ -0.12
TPM1-220ENST00000559556 CLDN3O15551 220 aa14.28□□□□□ -0.12
TPM1-220ENST00000559556 MOSPD3O75425 235 aa14.28□□□□□ -0.12
TPM1-220ENST00000559556 CXCL8P10145 99 aa14.28□□□□□ -0.12
TPM1-220ENST00000559556 CPB1P15086 417 aa14.28□□□□□ -0.12
TPM1-220ENST00000559556 LRPAP1P30533 357 aa14.28□□□□□ -0.12
TPM1-220ENST00000559556 SMTNP53814 917 aa14.28□□□□□ -0.12
TPM1-220ENST00000559556 SLC12A3P55017 1021 aa14.28□□□□□ -0.12
TPM1-220ENST00000559556 RAD51AP2Q09MP3 1159 aa14.28□□□□□ -0.12
TPM1-220ENST00000559556 GRM2Q14416 872 aa14.28□□□□□ -0.12
TPM1-220ENST00000559556 PUM1Q14671 1186 aaKnown RBP eCLIP14.28□□□□□ -0.125e-9■□□□□ 8.1
TPM1-220ENST00000559556 SEZ6Q53EL9 994 aa14.28□□□□□ -0.12
TPM1-220ENST00000559556 CYP4A22Q5TCH4 519 aa14.28□□□□□ -0.12
TPM1-220ENST00000559556 VITQ6UXI7 678 aa14.28□□□□□ -0.12
TPM1-220ENST00000559556 MAP4K3Q8IVH8 894 aa14.28□□□□□ -0.12
TPM1-220ENST00000559556 LEMD2Q8NC56 503 aa14.28□□□□□ -0.12
TPM1-220ENST00000559556 CHD6Q8TD26 2715 aa14.28□□□□□ -0.12
TPM1-220ENST00000559556 SMARCD2Q92925 531 aa14.28□□□□□ -0.12
TPM1-220ENST00000559556 IRF7Q92985 503 aa14.28□□□□□ -0.12
TPM1-220ENST00000559556 PNMA5Q96PV4 448 aa14.28□□□□□ -0.12
TPM1-220ENST00000559556 HAPLN2Q9GZV7 340 aa14.28□□□□□ -0.12
TPM1-220ENST00000559556 EPC1Q9H2F5 836 aa14.28□□□□□ -0.12
TPM1-220ENST00000559556 BRD9Q9H8M2 597 aa14.28□□□□□ -0.12
TPM1-220ENST00000559556 PLEKHA5Q9HAU0 1116 aa14.28□□□□□ -0.12
TPM1-220ENST00000559556 TRPV4Q9HBA0 871 aa14.28□□□□□ -0.12
TPM1-220ENST00000559556 ASAH2Q9NR71 780 aa14.28□□□□□ -0.12
TPM1-220ENST00000559556 DLL3Q9NYJ7 618 aa14.28□□□□□ -0.12
TPM1-220ENST00000559556 CEP72Q9P209 647 aa14.28□□□□□ -0.12
TPM1-220ENST00000559556 NCANO14594 1321 aa14.27□□□□□ -0.12
TPM1-220ENST00000559556 MAN2B1O00754 1011 aa14.27□□□□□ -0.13
TPM1-220ENST00000559556 VNN2O95498 520 aa14.27□□□□□ -0.13
TPM1-220ENST00000559556 CLTAP09496 248 aa14.27□□□□□ -0.13
TPM1-220ENST00000559556 PSMC3P17980 439 aa14.27□□□□□ -0.13
TPM1-220ENST00000559556 AARSP49588 968 aaKnown RBP eCLIP14.27□□□□□ -0.13
TPM1-220ENST00000559556 NCKAP1LP55160 1127 aa14.27□□□□□ -0.13
TPM1-220ENST00000559556 YWHAHQ04917 246 aaPredicted RBP14.27□□□□□ -0.13
TPM1-220ENST00000559556 TWF1Q12792 350 aa14.27□□□□□ -0.13
TPM1-220ENST00000559556 ZBTB6Q15916 424 aa14.27□□□□□ -0.13
TPM1-220ENST00000559556 RILPL1Q5EBL4 403 aa14.27□□□□□ -0.13
TPM1-220ENST00000559556 IQCEQ6IPM2 695 aa14.27□□□□□ -0.13
TPM1-220ENST00000559556 RNF19BQ6ZMZ0 732 aa14.27□□□□□ -0.13
TPM1-220ENST00000559556 DGLUCYQ7Z3D6 616 aa14.27□□□□□ -0.13
TPM1-220ENST00000559556 HS6ST3Q8IZP7 471 aa14.27□□□□□ -0.13
TPM1-220ENST00000559556 DEPDC1BQ8WUY9 529 aa14.27□□□□□ -0.13
TPM1-220ENST00000559556 ATRIPQ8WXE1 791 aa14.27□□□□□ -0.13
TPM1-220ENST00000559556 ZNF512Q96ME7 567 aaPredicted RBP14.27□□□□□ -0.13
TPM1-220ENST00000559556 ZSWIM3Q96MP5 696 aa14.27□□□□□ -0.13
TPM1-220ENST00000559556 IER2Q9BTL4 223 aa14.27□□□□□ -0.13
TPM1-220ENST00000559556 TRMT61BQ9BVS5 477 aaKnown RBP14.27□□□□□ -0.13
TPM1-220ENST00000559556 OXCT2Q9BYC2 517 aaPredicted RBP14.27□□□□□ -0.13
TPM1-220ENST00000559556 FAM126AQ9BYI3 521 aaPredicted RBP14.27□□□□□ -0.13
TPM1-220ENST00000559556 CHRDQ9H2X0 955 aa14.27□□□□□ -0.13
TPM1-220ENST00000559556 ZNF334Q9HCZ1 680 aaPredicted RBP14.27□□□□□ -0.13
TPM1-220ENST00000559556 SMG5Q9UPR3 1016 aaKnown RBP14.27□□□□□ -0.13
TPM1-220ENST00000559556 KIF3AQ9Y496 699 aa14.27□□□□□ -0.13
TPM1-220ENST00000559556 YIPF1Q9Y548 306 aa14.27□□□□□ -0.13
TPM1-220ENST00000559556 PLXND1Q9Y4D7 1925 aa14.27□□□□□ -0.13
TPM1-220ENST00000559556 ABCA7Q8IZY2 2146 aa14.26□□□□□ -0.13
TPM1-220ENST00000559556 H0YCG3 227 aa14.26□□□□□ -0.13
TPM1-220ENST00000559556 FAM189A1O60320 539 aa14.26□□□□□ -0.13
TPM1-220ENST00000559556 OAZ2O95190 189 aa14.26□□□□□ -0.13
TPM1-220ENST00000559556 TDGF1P13385 188 aa14.26□□□□□ -0.13
TPM1-220ENST00000559556 CYP3A5P20815 502 aa14.26□□□□□ -0.13
TPM1-220ENST00000559556 MTAPQ13126 283 aa14.26□□□□□ -0.13
TPM1-220ENST00000559556 TMEM119Q4V9L6 283 aa14.26□□□□□ -0.13
TPM1-220ENST00000559556 ARL6IP4Q66PJ3 421 aaKnown RBP14.26□□□□□ -0.13
TPM1-220ENST00000559556 MAMSTRQ6ZN01 415 aa14.26□□□□□ -0.13
TPM1-220ENST00000559556 TMEM130Q8N3G9 435 aa14.26□□□□□ -0.13
TPM1-220ENST00000559556 LARSQ9P2J5 1176 aaKnown RBP14.26□□□□□ -0.13
TPM1-220ENST00000559556 NCDNQ9UBB6 729 aa14.26□□□□□ -0.13
TPM1-220ENST00000559556 UBQLN1Q9UMX0 589 aaKnown RBP14.26□□□□□ -0.13
TPM1-220ENST00000559556 NDRG2Q9UN36 371 aaKnown RBP14.26□□□□□ -0.13
TPM1-220ENST00000559556 MED19A0JLT2 244 aaPredicted RBP14.25□□□□□ -0.13
TPM1-220ENST00000559556 VWA3AA6NCI4 1184 aa14.25□□□□□ -0.13
TPM1-220ENST00000559556 ARNTLO00327 626 aa14.25□□□□□ -0.13
TPM1-220ENST00000559556 PIGRP01833 764 aa14.25□□□□□ -0.13
TPM1-220ENST00000559556 ADRB2P07550 413 aa14.25□□□□□ -0.13
TPM1-220ENST00000559556 PLA2G4BP0C869 781 aa14.25□□□□□ -0.13
TPM1-220ENST00000559556 MYL4P12829 197 aa14.25□□□□□ -0.13
TPM1-220ENST00000559556 SCP2P22307 547 aa14.25□□□□□ -0.13
TPM1-220ENST00000559556 MARCKSP29966 332 aaPredicted RBP14.25□□□□□ -0.13
TPM1-220ENST00000559556 GDI1P31150 447 aa14.25□□□□□ -0.13
TPM1-220ENST00000559556 TNFSF9P41273 254 aa14.25□□□□□ -0.13
TPM1-220ENST00000559556 MLLT6P55198 1093 aaPredicted RBP14.25□□□□□ -0.13
TPM1-220ENST00000559556 PPP2R3AQ06190 1150 aa14.25□□□□□ -0.13
TPM1-220ENST00000559556 PLD1Q13393 1074 aa14.25□□□□□ -0.13
TPM1-220ENST00000559556 ZRSR1Q15695 479 aaKnown RBP14.25□□□□□ -0.13
TPM1-220ENST00000559556 KYAT1Q16773 422 aa14.25□□□□□ -0.13
TPM1-220ENST00000559556 ARSHQ5FYA8 562 aa14.25□□□□□ -0.13
TPM1-220ENST00000559556 TSSK4Q6SA08 328 aa14.25□□□□□ -0.13
TPM1-220ENST00000559556 TMC8Q8IU68 726 aa14.25□□□□□ -0.13
TPM1-220ENST00000559556 MFSD6LQ8IWD5 586 aa14.25□□□□□ -0.13
Retrieved 100 of 20,778 RNA–protein pairs in 33 ms