RNA–Protein interactions for RNA: ENST00000559340.1

LDLR-210, Transcript of low density lipoprotein receptor, humanhuman

TSL 5

Gene LDLR, Length 605 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-210ENST00000559340 LMAN2LQ9H0V9 348 aa9.93□□□□□ -0.82
LDLR-210ENST00000559340 VPS16Q9H269 839 aa9.93□□□□□ -0.82
LDLR-210ENST00000559340 CXCL16Q9H2A7 254 aa9.93□□□□□ -0.82
LDLR-210ENST00000559340 FAM124BQ9H5Z6 455 aaPredicted RBP9.93□□□□□ -0.82
LDLR-210ENST00000559340 VRTNQ9H8Y1 702 aa9.93□□□□□ -0.82
LDLR-210ENST00000559340 RAB20Q9NX57 234 aa9.93□□□□□ -0.82
LDLR-210ENST00000559340 TAB2Q9NYJ8 693 aa9.93□□□□□ -0.82
LDLR-210ENST00000559340 DNAJB4Q9UDY4 337 aa9.93□□□□□ -0.82
LDLR-210ENST00000559340 LZTS1Q9Y250 596 aa9.93□□□□□ -0.82
LDLR-210ENST00000559340 YBX2Q9Y2T7 364 aaKnown RBP9.93□□□□□ -0.82
LDLR-210ENST00000559340 DAAM1Q9Y4D1 1078 aa9.93□□□□□ -0.82
LDLR-210ENST00000559340 PLXNA4Q9HCM2 1894 aa9.93□□□□□ -0.82
LDLR-210ENST00000559340 CUL9Q8IWT3 2517 aa9.92□□□□□ -0.82
LDLR-210ENST00000559340 VWA8A3KMH1 1905 aa9.92□□□□□ -0.82
LDLR-210ENST00000559340 LCHNA4D1U4 455 aa9.92□□□□□ -0.82
LDLR-210ENST00000559340 KPNA7A9QM74 516 aa9.92□□□□□ -0.82
LDLR-210ENST00000559340 H7C4K7 107 aa9.92□□□□□ -0.82
LDLR-210ENST00000559340 SYN3O14994 580 aa9.92□□□□□ -0.82
LDLR-210ENST00000559340 FGF18O76093 207 aa9.92□□□□□ -0.82
LDLR-210ENST00000559340 CST3P01034 146 aaPredicted RBP9.92□□□□□ -0.82
LDLR-210ENST00000559340 ODC1P11926 461 aa9.92□□□□□ -0.82
LDLR-210ENST00000559340 MYOGP15173 224 aa9.92□□□□□ -0.82
LDLR-210ENST00000559340 PBX2P40425 430 aa9.92□□□□□ -0.82
LDLR-210ENST00000559340 GUCY2FP51841 1108 aa9.92□□□□□ -0.82
LDLR-210ENST00000559340 UBASH3AP57075 661 aa9.92□□□□□ -0.82
LDLR-210ENST00000559340 TNNC1P63316 161 aa9.92□□□□□ -0.82
LDLR-210ENST00000559340 FANCCQ00597 558 aa9.92□□□□□ -0.82
LDLR-210ENST00000559340 CREMQ03060 361 aa9.92□□□□□ -0.82
LDLR-210ENST00000559340 UBXN1Q04323 297 aa9.92□□□□□ -0.82
LDLR-210ENST00000559340 GPM6BQ13491 265 aa9.92□□□□□ -0.82
LDLR-210ENST00000559340 EXOC3L4Q17RC7 722 aa9.92□□□□□ -0.82
LDLR-210ENST00000559340 ZNF699Q32M78 642 aa9.92□□□□□ -0.82
LDLR-210ENST00000559340 USP41Q3LFD5 358 aa9.92□□□□□ -0.82
LDLR-210ENST00000559340 KIAA1841Q6NSI8 718 aa9.92□□□□□ -0.82
LDLR-210ENST00000559340 FUT10Q6P4F1 479 aa9.92□□□□□ -0.82
LDLR-210ENST00000559340 PDZRN4Q6ZMN7 1036 aaPredicted RBP9.92□□□□□ -0.82
LDLR-210ENST00000559340 THEM5Q8N1Q8 247 aa9.92□□□□□ -0.82
LDLR-210ENST00000559340 TMEM86AQ8N2M4 240 aa9.92□□□□□ -0.82
LDLR-210ENST00000559340 RNF214Q8ND24 703 aa9.92□□□□□ -0.82
LDLR-210ENST00000559340 SUSD3Q96L08 255 aa9.92□□□□□ -0.82
LDLR-210ENST00000559340 FAM161BQ96MY7 647 aa9.92□□□□□ -0.82
LDLR-210ENST00000559340 NT5C1BQ96P26 610 aa9.92□□□□□ -0.82
LDLR-210ENST00000559340 OXCT2Q9BYC2 517 aaPredicted RBP9.92□□□□□ -0.82
LDLR-210ENST00000559340 GOLGA2P5Q9HBQ8 144 aa9.92□□□□□ -0.82
LDLR-210ENST00000559340 GDAP2Q9NXN4 497 aa9.92□□□□□ -0.82
LDLR-210ENST00000559340 SIX4Q9UIU6 781 aa9.92□□□□□ -0.82
LDLR-210ENST00000559340 PCDHB8Q9UN66 801 aa9.92□□□□□ -0.82
LDLR-210ENST00000559340 PTPRJQ12913 1337 aa9.91□□□□□ -0.82
LDLR-210ENST00000559340 LGALS16A8MUM7 142 aa9.91□□□□□ -0.82
LDLR-210ENST00000559340 NT5C1B-RDH14C9J2C7 533 aa9.91□□□□□ -0.82
LDLR-210ENST00000559340 H3BNC9 293 aa9.91□□□□□ -0.82
LDLR-210ENST00000559340 M0QZQ0 153 aa9.91□□□□□ -0.82
LDLR-210ENST00000559340 CYB561D2O14569 222 aa9.91□□□□□ -0.82
LDLR-210ENST00000559340 ASS1P00966 412 aaKnown RBP9.91□□□□□ -0.82
LDLR-210ENST00000559340 TYMPP19971 482 aa9.91□□□□□ -0.82
LDLR-210ENST00000559340 TBXAS1P24557 533 aaPredicted RBP9.91□□□□□ -0.82
LDLR-210ENST00000559340 AARSP49588 968 aaKnown RBP eCLIP9.91□□□□□ -0.82
LDLR-210ENST00000559340 MYL6P60660 151 aa9.91□□□□□ -0.82
LDLR-210ENST00000559340 PTPROQ16827 1216 aa9.91□□□□□ -0.82
LDLR-210ENST00000559340 WDR72Q3MJ13 1102 aa9.91□□□□□ -0.82
LDLR-210ENST00000559340 CBWD6Q4V339 395 aa9.91□□□□□ -0.82
LDLR-210ENST00000559340 CBWD3Q5JTY5 395 aa9.91□□□□□ -0.82
LDLR-210ENST00000559340 CBWD5Q5RIA9 395 aa9.91□□□□□ -0.82
LDLR-210ENST00000559340 FAM171A1Q5VUB5 890 aa9.91□□□□□ -0.82
LDLR-210ENST00000559340 ENOSF1Q7L5Y1 443 aa9.91□□□□□ -0.82
LDLR-210ENST00000559340 TOP6BLQ8N6T0 577 aa9.91□□□□□ -0.82
LDLR-210ENST00000559340 KLHL23Q8NBE8 558 aa9.91□□□□□ -0.82
LDLR-210ENST00000559340 TAS1R2Q8TE23 839 aa9.91□□□□□ -0.82
LDLR-210ENST00000559340 PPP2R3CQ969Q6 453 aa9.91□□□□□ -0.82
LDLR-210ENST00000559340 SENP8Q96LD8 212 aa9.91□□□□□ -0.82
LDLR-210ENST00000559340 PCMTD1Q96MG8 357 aaPredicted RBP9.91□□□□□ -0.82
LDLR-210ENST00000559340 MMS19Q96T76 1030 aa9.91□□□□□ -0.82
LDLR-210ENST00000559340 CDX2Q99626 313 aaPredicted RBP9.91□□□□□ -0.82
LDLR-210ENST00000559340 C17orf80Q9BSJ5 609 aa9.91□□□□□ -0.82
LDLR-210ENST00000559340 TTPALQ9BTX7 342 aa9.91□□□□□ -0.82
LDLR-210ENST00000559340 HERC2P3Q9BVR0 1158 aa9.91□□□□□ -0.82
LDLR-210ENST00000559340 HSD3B7Q9H2F3 369 aa9.91□□□□□ -0.82
LDLR-210ENST00000559340 ZNF576Q9H609 170 aa9.91□□□□□ -0.82
LDLR-210ENST00000559340 CYP3A43Q9HB55 503 aa9.91□□□□□ -0.82
LDLR-210ENST00000559340 NGRNQ9NPE2 291 aaKnown RBP9.91□□□□□ -0.82
LDLR-210ENST00000559340 RTN4Q9NQC3 1192 aaKnown RBP9.91□□□□□ -0.82
LDLR-210ENST00000559340 APOBEC3CQ9NRW3 190 aaKnown RBP eCLIP9.91□□□□□ -0.82
LDLR-210ENST00000559340 SNX9Q9Y5X1 595 aa9.91□□□□□ -0.82
LDLR-210ENST00000559340 A0A1B0GTH6 734 aa9.9□□□□□ -0.82
LDLR-210ENST00000559340 KIF4AO95239 1232 aa9.9□□□□□ -0.82
LDLR-210ENST00000559340 VNN1O95497 513 aa9.9□□□□□ -0.82
LDLR-210ENST00000559340 SOD2P04179 222 aa9.9□□□□□ -0.82
LDLR-210ENST00000559340 URODP06132 367 aa9.9□□□□□ -0.82
LDLR-210ENST00000559340 ATP1A3P13637 1013 aa9.9□□□□□ -0.82
LDLR-210ENST00000559340 RFX1P22670 979 aa9.9□□□□□ -0.82
LDLR-210ENST00000559340 LHX1P48742 406 aa9.9□□□□□ -0.82
LDLR-210ENST00000559340 NOP14P78316 857 aaKnown RBP9.9□□□□□ -0.82
LDLR-210ENST00000559340 PLCB2Q00722 1185 aa9.9□□□□□ -0.82
LDLR-210ENST00000559340 TIGD5Q53EQ6 642 aa9.9□□□□□ -0.82
LDLR-210ENST00000559340 MIIPQ5JXC2 388 aa9.9□□□□□ -0.82
LDLR-210ENST00000559340 ANKS3Q6ZW76 656 aa9.9□□□□□ -0.82
LDLR-210ENST00000559340 TMC7Q7Z402 723 aa9.9□□□□□ -0.82
LDLR-210ENST00000559340 VPS52Q8N1B4 723 aa9.9□□□□□ -0.82
LDLR-210ENST00000559340 CXorf38Q8TB03 319 aa9.9□□□□□ -0.82
LDLR-210ENST00000559340 SPPL3Q8TCT6 385 aa9.9□□□□□ -0.82
Retrieved 100 of 20,778 RNA–protein pairs in 20.3 ms