RNA–Protein interactions for RNA: ENST00000559119.1

VPS13C-208, Transcript of vacuolar protein sorting 13 homolog C, humanhuman

TSL 2

Gene VPS13C, Length 738 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13C-208ENST00000559119 ATL2Q8NHH9 583 aa6.17□□□□□ -1.42
VPS13C-208ENST00000559119 SSH1Q8WYL5 1049 aa6.17□□□□□ -1.42
VPS13C-208ENST00000559119 LPIN2Q92539 896 aa6.17□□□□□ -1.42
VPS13C-208ENST00000559119 RAB24Q969Q5 203 aa6.17□□□□□ -1.42
VPS13C-208ENST00000559119 PACSIN1Q9BY11 444 aa6.17□□□□□ -1.42
VPS13C-208ENST00000559119 TMA7Q9Y2S6 64 aaKnown RBP6.17□□□□□ -1.42
VPS13C-208ENST00000559119 TOR1BO14657 336 aa6.16□□□□□ -1.42
VPS13C-208ENST00000559119 CLSTN1O94985 981 aa6.16□□□□□ -1.42
VPS13C-208ENST00000559119 CHRM2P08172 466 aa6.16□□□□□ -1.42
VPS13C-208ENST00000559119 KLF1Q13351 362 aaPredicted RBP6.16□□□□□ -1.42
VPS13C-208ENST00000559119 DYRK1AQ13627 763 aa6.16□□□□□ -1.42
VPS13C-208ENST00000559119 KRT26Q7Z3Y9 468 aa6.16□□□□□ -1.42
VPS13C-208ENST00000559119 SNX19Q92543 992 aa6.16□□□□□ -1.42
VPS13C-208ENST00000559119 CTTNBP2NLQ9P2B4 639 aa6.16□□□□□ -1.42
VPS13C-208ENST00000559119 WNT6Q9Y6F9 365 aa6.16□□□□□ -1.42
VPS13C-208ENST00000559119 KAT6AQ92794 2004 aa6.16□□□□□ -1.42
VPS13C-208ENST00000559119 COL3A1P02461 1466 aaPredicted RBP6.15□□□□□ -1.42
VPS13C-208ENST00000559119 CCDC195A0A1B0GUA6 201 aa6.15□□□□□ -1.42
VPS13C-208ENST00000559119 CGB1A6NKQ9 187 aa6.15□□□□□ -1.42
VPS13C-208ENST00000559119 SBK3P0C264 359 aa6.15□□□□□ -1.42
VPS13C-208ENST00000559119 ANXA11P50995 505 aaKnown RBP6.15□□□□□ -1.42
VPS13C-208ENST00000559119 ZNF81P51508 661 aa6.15□□□□□ -1.42
VPS13C-208ENST00000559119 CDC42EP1Q00587 391 aa6.15□□□□□ -1.42
VPS13C-208ENST00000559119 EXOSC10Q01780 885 aaKnown RBP6.15□□□□□ -1.42
VPS13C-208ENST00000559119 PIGFQ07326 219 aa6.15□□□□□ -1.42
VPS13C-208ENST00000559119 TARDBPQ13148 414 aaKnown RBP eCLIP6.15□□□□□ -1.42
VPS13C-208ENST00000559119 FAM153CQ494X1 144 aa6.15□□□□□ -1.42
VPS13C-208ENST00000559119 KIAA1614Q5VZ46 1190 aa6.15□□□□□ -1.42
VPS13C-208ENST00000559119 SDE2Q6IQ49 451 aa6.15□□□□□ -1.42
VPS13C-208ENST00000559119 MICALCLQ6ZW33 695 aa6.15□□□□□ -1.42
VPS13C-208ENST00000559119 AOPEPQ8N6M6 819 aa6.15□□□□□ -1.42
VPS13C-208ENST00000559119 B3GALNT2Q8NCR0 500 aa6.15□□□□□ -1.42
VPS13C-208ENST00000559119 IL17RDQ8NFM7 739 aa6.15□□□□□ -1.42
VPS13C-208ENST00000559119 HASPINQ8TF76 798 aa6.15□□□□□ -1.42
VPS13C-208ENST00000559119 SCARB1Q8WTV0 552 aa6.15□□□□□ -1.42
VPS13C-208ENST00000559119 HDAC10Q969S8 669 aa6.15□□□□□ -1.42
VPS13C-208ENST00000559119 KLHL32Q96NJ5 620 aa6.15□□□□□ -1.42
VPS13C-208ENST00000559119 IMPG2Q9BZV3 1241 aa6.15□□□□□ -1.42
VPS13C-208ENST00000559119 JKAMPQ9P055 326 aa6.15□□□□□ -1.42
VPS13C-208ENST00000559119 PCDHA13Q9Y5I0 950 aa6.15□□□□□ -1.42
VPS13C-208ENST00000559119 MANSC4A6NHS7 340 aaPredicted RBP6.14□□□□□ -1.43
VPS13C-208ENST00000559119 ADM5C9JUS6 153 aa6.14□□□□□ -1.43
VPS13C-208ENST00000559119 K7ESF4 209 aa6.14□□□□□ -1.43
VPS13C-208ENST00000559119 SLC16A1P53985 500 aa6.14□□□□□ -1.43
VPS13C-208ENST00000559119 AMIGO2Q86SJ2 522 aa6.14□□□□□ -1.43
VPS13C-208ENST00000559119 ADGRG5Q8IZF4 528 aa6.14□□□□□ -1.43
VPS13C-208ENST00000559119 NSUN7Q8NE18 718 aaKnown RBP6.14□□□□□ -1.43
VPS13C-208ENST00000559119 MYCBPAPQ8TBZ2 947 aa6.14□□□□□ -1.43
VPS13C-208ENST00000559119 HAPLN3Q96S86 360 aa6.14□□□□□ -1.43
VPS13C-208ENST00000559119 VSX1Q9NZR4 365 aaPredicted RBP6.14□□□□□ -1.43
VPS13C-208ENST00000559119 TRIM75PA6NK02 468 aa6.13□□□□□ -1.43
VPS13C-208ENST00000559119 SUN1O94901 812 aa6.13□□□□□ -1.43
VPS13C-208ENST00000559119 CD1AP06126 327 aa6.13□□□□□ -1.43
VPS13C-208ENST00000559119 PPP3CBP16298 524 aa6.13□□□□□ -1.43
VPS13C-208ENST00000559119 NXPH1P58417 271 aa6.13□□□□□ -1.43
VPS13C-208ENST00000559119 TXNRD1Q16881 649 aa6.13□□□□□ -1.43
VPS13C-208ENST00000559119 GADL1Q6ZQY3 521 aa6.13□□□□□ -1.43
VPS13C-208ENST00000559119 ZNF365Q70YC5 407 aa6.13□□□□□ -1.43
VPS13C-208ENST00000559119 CFAP52Q8N1V2 620 aa6.13□□□□□ -1.43
VPS13C-208ENST00000559119 IFI44Q8TCB0 444 aa6.13□□□□□ -1.43
VPS13C-208ENST00000559119 DDB2Q92466 427 aa6.13□□□□□ -1.43
VPS13C-208ENST00000559119 ST3GAL5Q9UNP4 418 aa6.13□□□□□ -1.43
VPS13C-208ENST00000559119 WIPF3A6NGB9 483 aa6.12□□□□□ -1.43
VPS13C-208ENST00000559119 LINC00473A8K010 186 aa6.12□□□□□ -1.43
VPS13C-208ENST00000559119 SGTAO43765 313 aa6.12□□□□□ -1.43
VPS13C-208ENST00000559119 NDUFS2O75306 463 aa6.12□□□□□ -1.43
VPS13C-208ENST00000559119 SLC43A1O75387 559 aa6.12□□□□□ -1.43
VPS13C-208ENST00000559119 PRKCGP05129 697 aa6.12□□□□□ -1.43
VPS13C-208ENST00000559119 VIL1P09327 827 aaKnown RBP6.12□□□□□ -1.43
VPS13C-208ENST00000559119 ELFN1P0C7U0 828 aa6.12□□□□□ -1.43
VPS13C-208ENST00000559119 ZNF280AP59817 542 aaPredicted RBP6.12□□□□□ -1.43
VPS13C-208ENST00000559119 MC2RQ01718 297 aa6.12□□□□□ -1.43
VPS13C-208ENST00000559119 ITIH3Q06033 890 aa6.12□□□□□ -1.43
VPS13C-208ENST00000559119 HLXQ14774 488 aaPredicted RBP6.12□□□□□ -1.43
VPS13C-208ENST00000559119 ACAP2Q15057 778 aa6.12□□□□□ -1.43
VPS13C-208ENST00000559119 SRSF7Q16629 238 aaKnown RBP eCLIP6.12□□□□□ -1.43
VPS13C-208ENST00000559119 FCRLBQ6BAA4 426 aa6.12□□□□□ -1.43
VPS13C-208ENST00000559119 PGM2L1Q6PCE3 622 aa6.12□□□□□ -1.43
VPS13C-208ENST00000559119 SLC17A8Q8NDX2 589 aa6.12□□□□□ -1.43
VPS13C-208ENST00000559119 NR2E3Q9Y5X4 410 aa6.12□□□□□ -1.43
VPS13C-208ENST00000559119 WDR91A4D1P6 747 aa6.11□□□□□ -1.43
VPS13C-208ENST00000559119 E7ENX8 843 aa6.11□□□□□ -1.43
VPS13C-208ENST00000559119 GCOM1H8Y6P7 765 aaPredicted RBP6.11□□□□□ -1.43
VPS13C-208ENST00000559119 TAP2Q03519 686 aa6.11□□□□□ -1.43
VPS13C-208ENST00000559119 RAB39AQ14964 217 aa6.11□□□□□ -1.43
VPS13C-208ENST00000559119 FLYWCH1Q4VC44 716 aa6.11□□□□□ -1.43
VPS13C-208ENST00000559119 C1QL2Q7Z5L3 287 aa6.11□□□□□ -1.43
VPS13C-208ENST00000559119 PDPRQ8NCN5 879 aa6.11□□□□□ -1.43
VPS13C-208ENST00000559119 TMIEQ8NEW7 156 aa6.11□□□□□ -1.43
VPS13C-208ENST00000559119 ZNF778Q96MU6 729 aa6.11□□□□□ -1.43
VPS13C-208ENST00000559119 SMOQ99835 787 aa6.11□□□□□ -1.43
VPS13C-208ENST00000559119 C1QTNF7Q9BXJ2 289 aa6.11□□□□□ -1.43
VPS13C-208ENST00000559119 KLC4Q9NSK0 619 aa6.11□□□□□ -1.43
VPS13C-208ENST00000559119 MKS1Q9NXB0 559 aa6.11□□□□□ -1.43
VPS13C-208ENST00000559119 SLC45A2Q9UMX9 530 aa6.11□□□□□ -1.43
VPS13C-208ENST00000559119 TTLL1O95922 423 aa6.1□□□□□ -1.43
VPS13C-208ENST00000559119 CELA2AP08217 269 aa6.1□□□□□ -1.43
VPS13C-208ENST00000559119 ITGB6P18564 788 aa6.1□□□□□ -1.43
VPS13C-208ENST00000559119 NPTX2P47972 431 aa6.1□□□□□ -1.43
VPS13C-208ENST00000559119 POU6F2P78424 691 aaPredicted RBP6.1□□□□□ -1.43
Retrieved 100 of 20,778 RNA–protein pairs in 603.2 ms