RNA–Protein interactions for RNA: ENST00000558471.5

LRRC28-206, Transcript of leucine rich repeat containing 28, humanhuman

TSL 3

Gene LRRC28, Length 793 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LRRC28-206ENST00000558471 KRT19P08727 400 aa13.48□□□□□ -0.25
LRRC28-206ENST00000558471 EPCAMP16422 314 aa13.48□□□□□ -0.25
LRRC28-206ENST00000558471 KCNA5P22460 613 aa13.48□□□□□ -0.25
LRRC28-206ENST00000558471 PSMC2P35998 433 aaKnown RBP13.48□□□□□ -0.25
LRRC28-206ENST00000558471 TAF6P49848 677 aa13.48□□□□□ -0.25
LRRC28-206ENST00000558471 CLDN10P78369 228 aa13.48□□□□□ -0.25
LRRC28-206ENST00000558471 RBP5P82980 135 aa13.48□□□□□ -0.25
LRRC28-206ENST00000558471 LRRC63Q05C16 580 aa13.48□□□□□ -0.25
LRRC28-206ENST00000558471 MRPL58Q14197 206 aaKnown RBP13.48□□□□□ -0.25
LRRC28-206ENST00000558471 VARS2Q5ST30 1063 aaKnown RBP13.48□□□□□ -0.25
LRRC28-206ENST00000558471 PDXDC1Q6P996 788 aa13.48□□□□□ -0.25
LRRC28-206ENST00000558471 TMEM184AQ6ZMB5 413 aa13.48□□□□□ -0.25
LRRC28-206ENST00000558471 TRAPPC11Q7Z392 1133 aa13.48□□□□□ -0.25
LRRC28-206ENST00000558471 GLYCTKQ8IVS8 523 aa13.48□□□□□ -0.25
LRRC28-206ENST00000558471 ZC3H3Q8IXZ2 948 aaKnown RBP13.48□□□□□ -0.25
LRRC28-206ENST00000558471 FAM186BQ8IYM0 893 aa13.48□□□□□ -0.25
LRRC28-206ENST00000558471 TMC2Q8TDI7 906 aa13.48□□□□□ -0.25
LRRC28-206ENST00000558471 NELFBQ8WX92 580 aa13.48□□□□□ -0.25
LRRC28-206ENST00000558471 SENP8Q96LD8 212 aa13.48□□□□□ -0.25
LRRC28-206ENST00000558471 DUSP9Q99956 384 aaKnown RBP13.48□□□□□ -0.25
LRRC28-206ENST00000558471 THEGQ9P2T0 379 aa13.48□□□□□ -0.25
LRRC28-206ENST00000558471 BARX2Q9UMQ3 279 aaPredicted RBP13.48□□□□□ -0.25
LRRC28-206ENST00000558471 TIMM13Q9Y5L4 95 aaPredicted RBP13.48□□□□□ -0.25
LRRC28-206ENST00000558471 FSD2A1L4K1 749 aa13.47□□□□□ -0.25
LRRC28-206ENST00000558471 KPNA7A9QM74 516 aa13.47□□□□□ -0.25
LRRC28-206ENST00000558471 H3BQ06 376 aaPredicted RBP13.47□□□□□ -0.25
LRRC28-206ENST00000558471 MBD3O95983 291 aa13.47□□□□□ -0.25
LRRC28-206ENST00000558471 ADH1AP07327 375 aa13.47□□□□□ -0.25
LRRC28-206ENST00000558471 PAX3P23760 479 aa13.47□□□□□ -0.25
LRRC28-206ENST00000558471 NDUFV1P49821 464 aa13.47□□□□□ -0.25
LRRC28-206ENST00000558471 CLCN4P51793 760 aa13.47□□□□□ -0.25
LRRC28-206ENST00000558471 STX17P56962 302 aa13.47□□□□□ -0.25
LRRC28-206ENST00000558471 FKBP3Q00688 224 aaKnown RBP13.47□□□□□ -0.25
LRRC28-206ENST00000558471 CREMQ03060 361 aa13.47□□□□□ -0.25
LRRC28-206ENST00000558471 C1orf220Q5T0J3 134 aa13.47□□□□□ -0.25
LRRC28-206ENST00000558471 TTI2Q6NXR4 508 aa13.47□□□□□ -0.25
LRRC28-206ENST00000558471 RSPO2Q6UXX9 243 aaPredicted RBP13.47□□□□□ -0.25
LRRC28-206ENST00000558471 ANKS3Q6ZW76 656 aa13.47□□□□□ -0.25
LRRC28-206ENST00000558471 PPFIBP1Q86W92 1011 aa13.47□□□□□ -0.25
LRRC28-206ENST00000558471 PALB2Q86YC2 1186 aa13.47□□□□□ -0.25
LRRC28-206ENST00000558471 APPL2Q8NEU8 664 aa13.47□□□□□ -0.25
LRRC28-206ENST00000558471 MKNK1Q9BUB5 465 aa13.47□□□□□ -0.25
LRRC28-206ENST00000558471 MTRRQ9UBK8 725 aa13.47□□□□□ -0.25
LRRC28-206ENST00000558471 CTNND2Q9UQB3 1225 aa13.47□□□□□ -0.25
LRRC28-206ENST00000558471 BACE2Q9Y5Z0 518 aa13.47□□□□□ -0.25
LRRC28-206ENST00000558471 TCF20Q9UGU0 1960 aaKnown RBP13.46□□□□□ -0.25
LRRC28-206ENST00000558471 CYB561D2O14569 222 aa13.46□□□□□ -0.25
LRRC28-206ENST00000558471 TGM5O43548 720 aa13.46□□□□□ -0.25
LRRC28-206ENST00000558471 TBC1D4O60343 1298 aa13.46□□□□□ -0.25
LRRC28-206ENST00000558471 C4BPAP04003 597 aaKnown RBP13.46□□□□□ -0.25
LRRC28-206ENST00000558471 SPATA31D3P0C874 917 aa13.46□□□□□ -0.25
LRRC28-206ENST00000558471 TYMPP19971 482 aa13.46□□□□□ -0.25
LRRC28-206ENST00000558471 OR1D2P34982 312 aa13.46□□□□□ -0.25
LRRC28-206ENST00000558471 PNPLA4P41247 253 aa13.46□□□□□ -0.25
LRRC28-206ENST00000558471 VAMP7P51809 220 aa13.46□□□□□ -0.25
LRRC28-206ENST00000558471 MCCD1P59942 119 aaPredicted RBP13.46□□□□□ -0.25
LRRC28-206ENST00000558471 PAK1Q13153 545 aa13.46□□□□□ -0.25
LRRC28-206ENST00000558471 LEXMQ3ZCV2 418 aa13.46□□□□□ -0.25
LRRC28-206ENST00000558471 SV2CQ496J9 727 aa13.46□□□□□ -0.25
LRRC28-206ENST00000558471 ANKRD54Q6NXT1 300 aa13.46□□□□□ -0.25
LRRC28-206ENST00000558471 LILRA6Q6PI73 481 aa13.46□□□□□ -0.25
LRRC28-206ENST00000558471 RBM43Q6ZSC3 357 aaKnown RBP13.46□□□□□ -0.25
LRRC28-206ENST00000558471 SPATA31D4Q6ZUB0 917 aa13.46□□□□□ -0.25
LRRC28-206ENST00000558471 INTS8Q75QN2 995 aaKnown RBP13.46□□□□□ -0.25
LRRC28-206ENST00000558471 PHF6Q8IWS0 365 aaKnown RBP eCLIP13.46□□□□□ -0.25
LRRC28-206ENST00000558471 LRRC52Q8N7C0 313 aa13.46□□□□□ -0.25
LRRC28-206ENST00000558471 MLKLQ8NB16 471 aa13.46□□□□□ -0.25
LRRC28-206ENST00000558471 CASP10Q92851 521 aa13.46□□□□□ -0.25
LRRC28-206ENST00000558471 MSLNLQ96KJ4 702 aa13.46□□□□□ -0.25
LRRC28-206ENST00000558471 ZNF560Q96MR9 790 aa13.46□□□□□ -0.25
LRRC28-206ENST00000558471 CDY1Q9Y6F8 540 aa13.46□□□□□ -0.25
LRRC28-206ENST00000558471 TSC2P49815 1807 aa13.46□□□□□ -0.26
LRRC28-206ENST00000558471 BICDL2A1A5D9 508 aa13.45□□□□□ -0.26
LRRC28-206ENST00000558471 H7C4K7 107 aa13.45□□□□□ -0.26
LRRC28-206ENST00000558471 IKBKBO14920 756 aa13.45□□□□□ -0.26
LRRC28-206ENST00000558471 PHACTR2O75167 634 aa13.45□□□□□ -0.26
LRRC28-206ENST00000558471 OAZ2O95190 189 aa13.45□□□□□ -0.26
LRRC28-206ENST00000558471 GLUD1P00367 558 aa13.45□□□□□ -0.26
LRRC28-206ENST00000558471 TRIM49P0CI25 452 aa13.45□□□□□ -0.26
LRRC28-206ENST00000558471 TRIM49CP0CI26 452 aa13.45□□□□□ -0.26
LRRC28-206ENST00000558471 EPB41P11171 864 aaKnown RBP13.45□□□□□ -0.26
LRRC28-206ENST00000558471 ODC1P11926 461 aa13.45□□□□□ -0.26
LRRC28-206ENST00000558471 KRT13P13646 458 aa13.45□□□□□ -0.26
LRRC28-206ENST00000558471 AP3M2P53677 418 aa13.45□□□□□ -0.26
LRRC28-206ENST00000558471 NLRP12P59046 1061 aa13.45□□□□□ -0.26
LRRC28-206ENST00000558471 MRPS5P82675 430 aaKnown RBP13.45□□□□□ -0.26
LRRC28-206ENST00000558471 YWHAHQ04917 246 aaPredicted RBP13.45□□□□□ -0.26
LRRC28-206ENST00000558471 BFSP1Q12934 665 aa13.45□□□□□ -0.26
LRRC28-206ENST00000558471 RAB33AQ14088 237 aa13.45□□□□□ -0.26
LRRC28-206ENST00000558471 CLUL1Q15846 466 aa13.45□□□□□ -0.26
LRRC28-206ENST00000558471 DPCR1Q3MIW9 517 aa13.45□□□□□ -0.26
LRRC28-206ENST00000558471 CTXN3Q4LDR2 81 aa13.45□□□□□ -0.26
LRRC28-206ENST00000558471 TDRD10Q5VZ19 366 aaKnown RBP13.45□□□□□ -0.26
LRRC28-206ENST00000558471 SYCE2Q6PIF2 218 aa13.45□□□□□ -0.26
LRRC28-206ENST00000558471 FOXR2Q6PJQ5 311 aa13.45□□□□□ -0.26
LRRC28-206ENST00000558471 USP37Q86T82 979 aa13.45□□□□□ -0.26
LRRC28-206ENST00000558471 GADD45GIP1Q8TAE8 222 aaPredicted RBP13.45□□□□□ -0.26
LRRC28-206ENST00000558471 ATXN2LQ8WWM7 1075 aaKnown RBP13.45□□□□□ -0.26
LRRC28-206ENST00000558471 HPDLQ96IR7 371 aa13.45□□□□□ -0.26
LRRC28-206ENST00000558471 MED15Q96RN5 788 aa13.45□□□□□ -0.26
Retrieved 100 of 20,778 RNA–protein pairs in 28.5 ms