RNA–Protein interactions for RNA: ENST00000558285.5

USP3-208, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 1 (best) BASIC

Gene USP3, Length 1,742 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-208ENST00000558285 FSIP1Q8NA03 581 aa9.36□□□□□ -0.91
USP3-208ENST00000558285 SPATA18Q8TC71 538 aa9.36□□□□□ -0.91
USP3-208ENST00000558285 NXPE3Q969Y0 559 aa9.36□□□□□ -0.91
USP3-208ENST00000558285 FAM213AQ9BRX8 229 aa9.36□□□□□ -0.91
USP3-208ENST00000558285 VN1R3Q9BXE9 311 aa9.36□□□□□ -0.91
USP3-208ENST00000558285 S1PR5Q9H228 398 aa9.36□□□□□ -0.91
USP3-208ENST00000558285 DPP3Q9NY33 737 aa9.36□□□□□ -0.91
USP3-208ENST00000558285 ITGA11Q9UKX5 1188 aa9.36□□□□□ -0.91
USP3-208ENST00000558285 UQCRHLA0A096LP55 91 aa9.36□□□□□ -0.91
USP3-208ENST00000558285 CCDC195A0A1B0GUA6 201 aa9.36□□□□□ -0.91
USP3-208ENST00000558285 TGM5O43548 720 aa9.36□□□□□ -0.91
USP3-208ENST00000558285 CALUO43852 315 aaPredicted RBP9.36□□□□□ -0.91
USP3-208ENST00000558285 UQCRHP07919 91 aa9.36□□□□□ -0.91
USP3-208ENST00000558285 MYBP10242 640 aa9.36□□□□□ -0.91
USP3-208ENST00000558285 RPL13P26373 211 aaKnown RBP9.36□□□□□ -0.91
USP3-208ENST00000558285 OR1D2P34982 312 aa9.36□□□□□ -0.91
USP3-208ENST00000558285 PPP1R2P41236 205 aa9.36□□□□□ -0.91
USP3-208ENST00000558285 EMP3P54852 163 aa9.36□□□□□ -0.91
USP3-208ENST00000558285 RBP5P82980 135 aa9.36□□□□□ -0.91
USP3-208ENST00000558285 TFAMQ00059 246 aaKnown RBP9.36□□□□□ -0.91
USP3-208ENST00000558285 PKP1Q13835 747 aa9.36□□□□□ -0.91
USP3-208ENST00000558285 RTP2Q5QGT7 225 aa9.36□□□□□ -0.91
USP3-208ENST00000558285 JADE1Q6IE81 842 aa9.36□□□□□ -0.91
USP3-208ENST00000558285 SLC8B1Q6J4K2 584 aa9.36□□□□□ -0.91
USP3-208ENST00000558285 BRSK2Q8IWQ3 736 aa9.36□□□□□ -0.91
USP3-208ENST00000558285 ZDHHC14Q8IZN3 488 aa9.36□□□□□ -0.91
USP3-208ENST00000558285 XXYLT1Q8NBI6 393 aa9.36□□□□□ -0.91
USP3-208ENST00000558285 ZNF461Q8TAF7 563 aa9.36□□□□□ -0.91
USP3-208ENST00000558285 LNX1Q8TBB1 728 aaPredicted RBP9.36□□□□□ -0.91
USP3-208ENST00000558285 ZNF507Q8TCN5 953 aa9.36□□□□□ -0.91
USP3-208ENST00000558285 PAGE5Q96GU1 130 aa9.36□□□□□ -0.91
USP3-208ENST00000558285 FIZ1Q96SL8 496 aa9.36□□□□□ -0.91
USP3-208ENST00000558285 STRA6Q9BX79 667 aa9.36□□□□□ -0.91
USP3-208ENST00000558285 PRKD2Q9BZL6 878 aa9.36□□□□□ -0.91
USP3-208ENST00000558285 FBXW11Q9UKB1 542 aa9.36□□□□□ -0.91
USP3-208ENST00000558285 FRMD4BQ9Y2L6 1034 aa9.36□□□□□ -0.91
USP3-208ENST00000558285 CDY1Q9Y6F8 540 aa9.36□□□□□ -0.91
USP3-208ENST00000558285 A0A087X0B3 334 aa9.35□□□□□ -0.91
USP3-208ENST00000558285 A0A1B0GVL5 298 aa9.35□□□□□ -0.91
USP3-208ENST00000558285 LOC730098B7Z3J9 87 aa9.35□□□□□ -0.91
USP3-208ENST00000558285 ANKRD63C9JTQ0 380 aa9.35□□□□□ -0.91
USP3-208ENST00000558285 PI4K2BG5E9Z4 385 aa9.35□□□□□ -0.91
USP3-208ENST00000558285 ZNF197O14709 1029 aa9.35□□□□□ -0.91
USP3-208ENST00000558285 EXOC3O60645 756 aa9.35□□□□□ -0.91
USP3-208ENST00000558285 HUS1O60921 280 aa9.35□□□□□ -0.91
USP3-208ENST00000558285 PRPF6O94906 941 aaKnown RBP9.35□□□□□ -0.91
USP3-208ENST00000558285 CLSTN1O94985 981 aa9.35□□□□□ -0.91
USP3-208ENST00000558285 FGF19O95750 216 aa9.35□□□□□ -0.91
USP3-208ENST00000558285 C8AP07357 584 aa9.35□□□□□ -0.91
USP3-208ENST00000558285 TKTP29401 623 aaKnown RBP9.35□□□□□ -0.91
USP3-208ENST00000558285 TSPY1Q01534 308 aa9.35□□□□□ -0.91
USP3-208ENST00000558285 SLC20A2Q08357 652 aa9.35□□□□□ -0.91
USP3-208ENST00000558285 STIM1Q13586 685 aa9.35□□□□□ -0.91
USP3-208ENST00000558285 MTMR3Q13615 1198 aa9.35□□□□□ -0.91
USP3-208ENST00000558285 MYBPC2Q14324 1141 aa9.35□□□□□ -0.91
USP3-208ENST00000558285 ZBTB6Q15916 424 aa9.35□□□□□ -0.91
USP3-208ENST00000558285 KNOP1Q1ED39 458 aaKnown RBP9.35□□□□□ -0.91
USP3-208ENST00000558285 DUOXA2Q1HG44 320 aa9.35□□□□□ -0.91
USP3-208ENST00000558285 SEZ6Q53EL9 994 aa9.35□□□□□ -0.91
USP3-208ENST00000558285 OVOS1Q6IE37 1185 aa9.35□□□□□ -0.91
USP3-208ENST00000558285 PRSS55Q6UWB4 352 aaPredicted RBP9.35□□□□□ -0.91
USP3-208ENST00000558285 TAS1R1Q7RTX1 841 aa9.35□□□□□ -0.91
USP3-208ENST00000558285 RNF135Q8IUD6 432 aa9.35□□□□□ -0.91
USP3-208ENST00000558285 GLYCTKQ8IVS8 523 aa9.35□□□□□ -0.91
USP3-208ENST00000558285 LRRC52Q8N7C0 313 aa9.35□□□□□ -0.91
USP3-208ENST00000558285 C2orf15Q8WU43 125 aaKnown RBP9.35□□□□□ -0.91
USP3-208ENST00000558285 RABGGTAQ92696 567 aa9.35□□□□□ -0.91
USP3-208ENST00000558285 C18orf25Q96B23 403 aaPredicted RBP9.35□□□□□ -0.91
USP3-208ENST00000558285 ZMAT2Q96NC0 199 aaKnown RBP9.35□□□□□ -0.91
USP3-208ENST00000558285 NECAB3Q96P71 396 aaPredicted RBP9.35□□□□□ -0.91
USP3-208ENST00000558285 PAAF1Q9BRP4 392 aa9.35□□□□□ -0.91
USP3-208ENST00000558285 APOL5Q9BWW9 433 aa9.35□□□□□ -0.91
USP3-208ENST00000558285 FAM117AQ9C073 453 aa9.35□□□□□ -0.91
USP3-208ENST00000558285 GOLGA2P5Q9HBQ8 144 aa9.35□□□□□ -0.91
USP3-208ENST00000558285 WDR6Q9NNW5 1121 aaKnown RBP9.35□□□□□ -0.91
USP3-208ENST00000558285 IGSF9Q9P2J2 1179 aa9.35□□□□□ -0.91
USP3-208ENST00000558285 TUBGCP4Q9UGJ1 667 aa9.35□□□□□ -0.91
USP3-208ENST00000558285 SERTAD1Q9UHV2 236 aa9.35□□□□□ -0.91
USP3-208ENST00000558285 POLIQ9UNA4 740 aa9.35□□□□□ -0.91
USP3-208ENST00000558285 HCN4Q9Y3Q4 1203 aa9.35□□□□□ -0.91
USP3-208ENST00000558285 ARIH1Q9Y4X5 557 aaPredicted RBP9.35□□□□□ -0.91
USP3-208ENST00000558285 CLUHO75153 1309 aa9.35□□□□□ -0.91
USP3-208ENST00000558285 FAM237AA0A1B0GTK4 181 aa9.34□□□□□ -0.91
USP3-208ENST00000558285 M0QZQ0 153 aa9.34□□□□□ -0.91
USP3-208ENST00000558285 KINO60870 393 aaKnown RBP9.34□□□□□ -0.91
USP3-208ENST00000558285 KRT19P08727 400 aa9.34□□□□□ -0.91
USP3-208ENST00000558285 GBP2P32456 591 aaPredicted RBP9.34□□□□□ -0.91
USP3-208ENST00000558285 TNFSF9P41273 254 aa9.34□□□□□ -0.91
USP3-208ENST00000558285 MYL7Q01449 175 aa9.34□□□□□ -0.91
USP3-208ENST00000558285 VEPH1Q14D04 833 aa9.34□□□□□ -0.91
USP3-208ENST00000558285 TAF12Q16514 161 aa9.34□□□□□ -0.91
USP3-208ENST00000558285 BMT2Q1RMZ1 405 aa9.34□□□□□ -0.91
USP3-208ENST00000558285 CYP4A22Q5TCH4 519 aa9.34□□□□□ -0.91
USP3-208ENST00000558285 C9orf57Q5W0N0 161 aa9.34□□□□□ -0.91
USP3-208ENST00000558285 KRBA2Q6ZNG9 492 aa9.34□□□□□ -0.91
USP3-208ENST00000558285 ITIH5Q86UX2 942 aa9.34□□□□□ -0.91
USP3-208ENST00000558285 WDR49Q8IV35 697 aa9.34□□□□□ -0.91
USP3-208ENST00000558285 C12orf56Q8IXR9 622 aa9.34□□□□□ -0.91
USP3-208ENST00000558285 DCP1BQ8IZD4 617 aaKnown RBP9.34□□□□□ -0.91
USP3-208ENST00000558285 TMEM86AQ8N2M4 240 aa9.34□□□□□ -0.91
Retrieved 100 of 20,778 RNA–protein pairs in 27.7 ms