RNA–Protein interactions for RNA: ENST00000557302.1

SHMT2-228, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 3

Gene SHMT2, Length 457 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-228ENST00000557302 CETN3O15182 167 aa14.66□□□□□ -0.06
SHMT2-228ENST00000557302 MAPK13O15264 365 aa14.66□□□□□ -0.06
SHMT2-228ENST00000557302 AKAP3O75969 853 aa14.66□□□□□ -0.06
SHMT2-228ENST00000557302 MBD3O95983 291 aa14.66□□□□□ -0.06
SHMT2-228ENST00000557302 KRT19P08727 400 aa14.66□□□□□ -0.06
SHMT2-228ENST00000557302 ODC1P11926 461 aa14.66□□□□□ -0.06
SHMT2-228ENST00000557302 CD44P16070 742 aaKnown RBP14.66□□□□□ -0.06
SHMT2-228ENST00000557302 RPL17P18621 184 aaKnown RBP14.66□□□□□ -0.06
SHMT2-228ENST00000557302 BMP6P22004 513 aa14.66□□□□□ -0.06
SHMT2-228ENST00000557302 CCNE1P24864 410 aa14.66□□□□□ -0.06
SHMT2-228ENST00000557302 PSMC2P35998 433 aaKnown RBP14.66□□□□□ -0.06
SHMT2-228ENST00000557302 CLCN4P51793 760 aa14.66□□□□□ -0.06
SHMT2-228ENST00000557302 MRPS5P82675 430 aaKnown RBP14.66□□□□□ -0.06
SHMT2-228ENST00000557302 RBP5P82980 135 aa14.66□□□□□ -0.06
SHMT2-228ENST00000557302 LRRC63Q05C16 580 aa14.66□□□□□ -0.06
SHMT2-228ENST00000557302 DLX2Q07687 328 aaPredicted RBP14.66□□□□□ -0.06
SHMT2-228ENST00000557302 KCNC3Q14003 757 aa14.66□□□□□ -0.06
SHMT2-228ENST00000557302 LEXMQ3ZCV2 418 aa14.66□□□□□ -0.06
SHMT2-228ENST00000557302 SV2CQ496J9 727 aa14.66□□□□□ -0.06
SHMT2-228ENST00000557302 VARS2Q5ST30 1063 aaKnown RBP14.66□□□□□ -0.06
SHMT2-228ENST00000557302 KLHL10Q6JEL2 608 aa14.66□□□□□ -0.06
SHMT2-228ENST00000557302 TMEM184AQ6ZMB5 413 aa14.66□□□□□ -0.06
SHMT2-228ENST00000557302 USP37Q86T82 979 aa14.66□□□□□ -0.06
SHMT2-228ENST00000557302 GLYCTKQ8IVS8 523 aa14.66□□□□□ -0.06
SHMT2-228ENST00000557302 GPT2Q8TD30 523 aa14.66□□□□□ -0.06
SHMT2-228ENST00000557302 PARD3BQ8TEW8 1205 aa14.66□□□□□ -0.06
SHMT2-228ENST00000557302 SLC22A17Q8WUG5 538 aa14.66□□□□□ -0.06
SHMT2-228ENST00000557302 POP1Q99575 1024 aaKnown RBP14.66□□□□□ -0.06
SHMT2-228ENST00000557302 CLEC1BQ9P126 229 aa14.66□□□□□ -0.06
SHMT2-228ENST00000557302 MTRRQ9UBK8 725 aa14.66□□□□□ -0.06
SHMT2-228ENST00000557302 LRRIQ3A6PVS8 624 aaPredicted RBP14.65□□□□□ -0.06
SHMT2-228ENST00000557302 PPP1R3GB7ZBB8 358 aa14.65□□□□□ -0.06
SHMT2-228ENST00000557302 H7C4K7 107 aa14.65□□□□□ -0.06
SHMT2-228ENST00000557302 SPTLC1O15269 473 aa14.65□□□□□ -0.06
SHMT2-228ENST00000557302 GLUD1P00367 558 aa14.65□□□□□ -0.06
SHMT2-228ENST00000557302 EPCAMP16422 314 aa14.65□□□□□ -0.06
SHMT2-228ENST00000557302 AP3M2P53677 418 aa14.65□□□□□ -0.06
SHMT2-228ENST00000557302 PMS1P54277 932 aaKnown RBP14.65□□□□□ -0.06
SHMT2-228ENST00000557302 ANKRD40Q6AI12 368 aa14.65□□□□□ -0.06
SHMT2-228ENST00000557302 ZNF280DQ6N043 979 aa14.65□□□□□ -0.06
SHMT2-228ENST00000557302 ANKRD54Q6NXT1 300 aa14.65□□□□□ -0.06
SHMT2-228ENST00000557302 ELMSAN1Q6PJG2 1045 aa14.65□□□□□ -0.06
SHMT2-228ENST00000557302 INTS8Q75QN2 995 aaKnown RBP14.65□□□□□ -0.06
SHMT2-228ENST00000557302 TRAPPC11Q7Z392 1133 aa14.65□□□□□ -0.06
SHMT2-228ENST00000557302 FAM186BQ8IYM0 893 aa14.65□□□□□ -0.06
SHMT2-228ENST00000557302 LRRC52Q8N7C0 313 aa14.65□□□□□ -0.06
SHMT2-228ENST00000557302 CXorf38Q8TB03 319 aa14.65□□□□□ -0.06
SHMT2-228ENST00000557302 PLEKHO2Q8TD55 490 aa14.65□□□□□ -0.06
SHMT2-228ENST00000557302 TMC2Q8TDI7 906 aa14.65□□□□□ -0.06
SHMT2-228ENST00000557302 SENP8Q96LD8 212 aa14.65□□□□□ -0.06
SHMT2-228ENST00000557302 CLSTN3Q9BQT9 956 aa14.65□□□□□ -0.06
SHMT2-228ENST00000557302 MKNK1Q9BUB5 465 aa14.65□□□□□ -0.06
SHMT2-228ENST00000557302 GZF1Q9H116 711 aaPredicted RBP14.65□□□□□ -0.06
SHMT2-228ENST00000557302 DZANK1Q9NVP4 752 aa14.65□□□□□ -0.06
SHMT2-228ENST00000557302 SIX4Q9UIU6 781 aa14.65□□□□□ -0.06
SHMT2-228ENST00000557302 CTNND2Q9UQB3 1225 aa14.65□□□□□ -0.06
SHMT2-228ENST00000557302 BACE2Q9Y5Z0 518 aa14.65□□□□□ -0.06
SHMT2-228ENST00000557302 BICDL2A1A5D9 508 aa14.64□□□□□ -0.07
SHMT2-228ENST00000557302 TRIM49BA6NDI0 452 aa14.64□□□□□ -0.07
SHMT2-228ENST00000557302 KPNA7A9QM74 516 aa14.64□□□□□ -0.07
SHMT2-228ENST00000557302 C1RP00736 705 aa14.64□□□□□ -0.07
SHMT2-228ENST00000557302 EPB41P11171 864 aaKnown RBP14.64□□□□□ -0.07
SHMT2-228ENST00000557302 KRT13P13646 458 aa14.64□□□□□ -0.07
SHMT2-228ENST00000557302 HOXB8P17481 243 aaPredicted RBP14.64□□□□□ -0.07
SHMT2-228ENST00000557302 TYMPP19971 482 aa14.64□□□□□ -0.07
SHMT2-228ENST00000557302 CLDN10P78369 228 aa14.64□□□□□ -0.07
SHMT2-228ENST00000557302 FKBP3Q00688 224 aaKnown RBP14.64□□□□□ -0.07
SHMT2-228ENST00000557302 YWHAHQ04917 246 aaPredicted RBP14.64□□□□□ -0.07
SHMT2-228ENST00000557302 BFSP1Q12934 665 aa14.64□□□□□ -0.07
SHMT2-228ENST00000557302 MYO1EQ12965 1108 aa14.64□□□□□ -0.07
SHMT2-228ENST00000557302 PAK1Q13153 545 aa14.64□□□□□ -0.07
SHMT2-228ENST00000557302 MRPL58Q14197 206 aaKnown RBP14.64□□□□□ -0.07
SHMT2-228ENST00000557302 CLUL1Q15846 466 aa14.64□□□□□ -0.07
SHMT2-228ENST00000557302 CTXN3Q4LDR2 81 aa14.64□□□□□ -0.07
SHMT2-228ENST00000557302 PALB2Q86YC2 1186 aa14.64□□□□□ -0.07
SHMT2-228ENST00000557302 NELFBQ8WX92 580 aa14.64□□□□□ -0.07
SHMT2-228ENST00000557302 EEF2KMTQ96G04 330 aa14.64□□□□□ -0.07
SHMT2-228ENST00000557302 MSLNLQ96KJ4 702 aa14.64□□□□□ -0.07
SHMT2-228ENST00000557302 ASB2Q96Q27 587 aa14.64□□□□□ -0.07
SHMT2-228ENST00000557302 COL25A1Q9BXS0 654 aaPredicted RBP14.64□□□□□ -0.07
SHMT2-228ENST00000557302 DPP7Q9UHL4 492 aa14.64□□□□□ -0.07
SHMT2-228ENST00000557302 CD207Q9UJ71 328 aa14.64□□□□□ -0.07
SHMT2-228ENST00000557302 DSEQ9UL01 958 aa14.64□□□□□ -0.07
SHMT2-228ENST00000557302 TIMM13Q9Y5L4 95 aaPredicted RBP14.64□□□□□ -0.07
SHMT2-228ENST00000557302 CDY1Q9Y6F8 540 aa14.64□□□□□ -0.07
SHMT2-228ENST00000557302 VWA8A3KMH1 1905 aa14.63□□□□□ -0.07
SHMT2-228ENST00000557302 SPDYE4A6NLX3 237 aa14.63□□□□□ -0.07
SHMT2-228ENST00000557302 CYB561D2O14569 222 aa14.63□□□□□ -0.07
SHMT2-228ENST00000557302 SLC16A3O15427 465 aaKnown RBP14.63□□□□□ -0.07
SHMT2-228ENST00000557302 ADAM12O43184 909 aa14.63□□□□□ -0.07
SHMT2-228ENST00000557302 TGM5O43548 720 aa14.63□□□□□ -0.07
SHMT2-228ENST00000557302 PHACTR2O75167 634 aa14.63□□□□□ -0.07
SHMT2-228ENST00000557302 OAZ2O95190 189 aa14.63□□□□□ -0.07
SHMT2-228ENST00000557302 OR1D2P34982 312 aa14.63□□□□□ -0.07
SHMT2-228ENST00000557302 VAMP7P51809 220 aa14.63□□□□□ -0.07
SHMT2-228ENST00000557302 DLG4P78352 724 aa14.63□□□□□ -0.07
SHMT2-228ENST00000557302 ENPEPQ07075 957 aa14.63□□□□□ -0.07
SHMT2-228ENST00000557302 BIRC3Q13489 604 aa14.63□□□□□ -0.07
SHMT2-228ENST00000557302 TRPC3Q13507 836 aa14.63□□□□□ -0.07
SHMT2-228ENST00000557302 PUS10Q3MIT2 529 aaKnown RBP14.63□□□□□ -0.07
Retrieved 100 of 20,778 RNA–protein pairs in 21.3 ms