RNA–Protein interactions for RNA: ENST00000556798.1

SHMT2-225, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 2

Gene SHMT2, Length 525 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-225ENST00000556798 RBP5P82980 135 aa18.85■□□□□ 0.61
SHMT2-225ENST00000556798 BIRC3Q13489 604 aa18.85■□□□□ 0.61
SHMT2-225ENST00000556798 PSMD5Q16401 504 aa18.85■□□□□ 0.61
SHMT2-225ENST00000556798 SV2CQ496J9 727 aa18.85■□□□□ 0.61
SHMT2-225ENST00000556798 TDRD10Q5VZ19 366 aaKnown RBP18.85■□□□□ 0.61
SHMT2-225ENST00000556798 SASS6Q6UVJ0 657 aa18.85■□□□□ 0.61
SHMT2-225ENST00000556798 LNX1Q8TBB1 728 aaPredicted RBP18.85■□□□□ 0.61
SHMT2-225ENST00000556798 PIK3R5Q8WYR1 880 aa18.85■□□□□ 0.61
SHMT2-225ENST00000556798 SENP8Q96LD8 212 aa18.85■□□□□ 0.61
SHMT2-225ENST00000556798 KLHL5Q96PQ7 755 aa18.85■□□□□ 0.61
SHMT2-225ENST00000556798 PRDM6Q9NQX0 595 aa18.85■□□□□ 0.61
SHMT2-225ENST00000556798 PCDHB8Q9UN66 801 aa18.85■□□□□ 0.61
SHMT2-225ENST00000556798 SSX2IPQ9Y2D8 614 aa18.85■□□□□ 0.61
SHMT2-225ENST00000556798 M0QZQ0 153 aa18.84■□□□□ 0.61
SHMT2-225ENST00000556798 SYN3O14994 580 aa18.84■□□□□ 0.61
SHMT2-225ENST00000556798 TEX28O15482 410 aa18.84■□□□□ 0.61
SHMT2-225ENST00000556798 DCAF17Q5H9S7 520 aaPredicted RBP18.84■□□□□ 0.61
SHMT2-225ENST00000556798 VARS2Q5ST30 1063 aaKnown RBP18.84■□□□□ 0.61
SHMT2-225ENST00000556798 LLGL2Q6P1M3 1020 aa18.84■□□□□ 0.61
SHMT2-225ENST00000556798 FOXR2Q6PJQ5 311 aa18.84■□□□□ 0.61
SHMT2-225ENST00000556798 EP400NLQ6ZTU2 488 aa18.84■□□□□ 0.61
SHMT2-225ENST00000556798 USP37Q86T82 979 aa18.84■□□□□ 0.61
SHMT2-225ENST00000556798 LRRC52Q8N7C0 313 aa18.84■□□□□ 0.61
SHMT2-225ENST00000556798 VN1R2Q8NFZ6 395 aa18.84■□□□□ 0.61
SHMT2-225ENST00000556798 SYAP1Q96A49 352 aaPredicted RBP18.84■□□□□ 0.61
SHMT2-225ENST00000556798 CEP63Q96MT8 703 aa18.84■□□□□ 0.61
SHMT2-225ENST00000556798 SRRTQ9BXP5 876 aaKnown RBP18.84■□□□□ 0.61
SHMT2-225ENST00000556798 EMILIN2Q9BXX0 1053 aa18.84■□□□□ 0.61
SHMT2-225ENST00000556798 CLDND1Q9NY35 253 aa18.84■□□□□ 0.61
SHMT2-225ENST00000556798 DACH1Q9UI36 760 aa18.84■□□□□ 0.61
SHMT2-225ENST00000556798 R3HCC1Q9Y3T6 440 aaKnown RBP18.84■□□□□ 0.61
SHMT2-225ENST00000556798 KPNA7A9QM74 516 aa18.83■□□□□ 0.6
SHMT2-225ENST00000556798 CYB561D2O14569 222 aa18.83■□□□□ 0.6
SHMT2-225ENST00000556798 ADAM12O43184 909 aa18.83■□□□□ 0.6
SHMT2-225ENST00000556798 PHACTR2O75167 634 aa18.83■□□□□ 0.6
SHMT2-225ENST00000556798 GLP2RO95838 553 aa18.83■□□□□ 0.6
SHMT2-225ENST00000556798 CST3P01034 146 aaPredicted RBP18.83■□□□□ 0.6
SHMT2-225ENST00000556798 C4BPAP04003 597 aaKnown RBP18.83■□□□□ 0.6
SHMT2-225ENST00000556798 ODC1P11926 461 aa18.83■□□□□ 0.6
SHMT2-225ENST00000556798 PNPLA4P41247 253 aa18.83■□□□□ 0.6
SHMT2-225ENST00000556798 GCLMP48507 274 aa18.83■□□□□ 0.6
SHMT2-225ENST00000556798 PPP3CAQ08209 521 aa18.83■□□□□ 0.6
SHMT2-225ENST00000556798 CCDC40Q4G0X9 1142 aa18.83■□□□□ 0.6
SHMT2-225ENST00000556798 TCERG1LQ5VWI1 586 aa18.83■□□□□ 0.6
SHMT2-225ENST00000556798 ELMO3Q96BJ8 720 aa18.83■□□□□ 0.6
SHMT2-225ENST00000556798 HPDLQ96IR7 371 aa18.83■□□□□ 0.6
SHMT2-225ENST00000556798 RXFP1Q9HBX9 757 aa18.83■□□□□ 0.6
SHMT2-225ENST00000556798 ARMCX3Q9UH62 379 aaPredicted RBP18.83■□□□□ 0.6
SHMT2-225ENST00000556798 CLSTN1O94985 981 aa18.82■□□□□ 0.6
SHMT2-225ENST00000556798 VNN1O95497 513 aa18.82■□□□□ 0.6
SHMT2-225ENST00000556798 KLRC2P26717 231 aa18.82■□□□□ 0.6
SHMT2-225ENST00000556798 AP3M2P53677 418 aa18.82■□□□□ 0.6
SHMT2-225ENST00000556798 MYL6P60660 151 aa18.82■□□□□ 0.6
SHMT2-225ENST00000556798 TRPC3Q13507 836 aa18.82■□□□□ 0.6
SHMT2-225ENST00000556798 STX1AQ16623 288 aa18.82■□□□□ 0.6
SHMT2-225ENST00000556798 ZACNQ401N2 412 aa18.82■□□□□ 0.6
SHMT2-225ENST00000556798 RSPO2Q6UXX9 243 aaPredicted RBP18.82■□□□□ 0.6
SHMT2-225ENST00000556798 C11orf57Q6ZUT1 292 aaPredicted RBP18.82■□□□□ 0.6
SHMT2-225ENST00000556798 ANKS3Q6ZW76 656 aa18.82■□□□□ 0.6
SHMT2-225ENST00000556798 SV2AQ7L0J3 742 aa18.82■□□□□ 0.6
SHMT2-225ENST00000556798 FILIP1Q7Z7B0 1213 aa18.82■□□□□ 0.6
SHMT2-225ENST00000556798 EFHBQ8N7U6 833 aa18.82■□□□□ 0.6
SHMT2-225ENST00000556798 APPL2Q8NEU8 664 aa18.82■□□□□ 0.6
SHMT2-225ENST00000556798 CDCA3Q99618 268 aaPredicted RBP18.82■□□□□ 0.6
SHMT2-225ENST00000556798 CLSTN3Q9BQT9 956 aa18.82■□□□□ 0.6
SHMT2-225ENST00000556798 APOBEC3CQ9NRW3 190 aaKnown RBP eCLIP18.82■□□□□ 0.6
SHMT2-225ENST00000556798 MTRRQ9UBK8 725 aa18.82■□□□□ 0.6
SHMT2-225ENST00000556798 SNX9Q9Y5X1 595 aa18.82■□□□□ 0.6
SHMT2-225ENST00000556798 HCFC2Q9Y5Z7 792 aa18.82■□□□□ 0.6
SHMT2-225ENST00000556798 IKBKBO14920 756 aa18.81■□□□□ 0.6
SHMT2-225ENST00000556798 TBX10O75333 385 aa18.81■□□□□ 0.6
SHMT2-225ENST00000556798 ADH1AP07327 375 aa18.81■□□□□ 0.6
SHMT2-225ENST00000556798 EPCAMP16422 314 aa18.81■□□□□ 0.6
SHMT2-225ENST00000556798 NDUFV1P49821 464 aa18.81■□□□□ 0.6
SHMT2-225ENST00000556798 CREMQ03060 361 aa18.81■□□□□ 0.6
SHMT2-225ENST00000556798 YWHAHQ04917 246 aaPredicted RBP18.81■□□□□ 0.6
SHMT2-225ENST00000556798 TYRO3Q06418 890 aa18.81■□□□□ 0.6
SHMT2-225ENST00000556798 ENPEPQ07075 957 aa18.81■□□□□ 0.6
SHMT2-225ENST00000556798 DLX2Q07687 328 aaPredicted RBP18.81■□□□□ 0.6
SHMT2-225ENST00000556798 MYO1EQ12965 1108 aa18.81■□□□□ 0.6
SHMT2-225ENST00000556798 NCOA4Q13772 614 aa18.81■□□□□ 0.6
SHMT2-225ENST00000556798 NFKBIBQ15653 356 aa18.81■□□□□ 0.6
SHMT2-225ENST00000556798 CTXN3Q4LDR2 81 aa18.81■□□□□ 0.6
SHMT2-225ENST00000556798 PDXDC1Q6P996 788 aa18.81■□□□□ 0.6
SHMT2-225ENST00000556798 C15orf39Q6ZRI6 1047 aa18.81■□□□□ 0.6
SHMT2-225ENST00000556798 PALB2Q86YC2 1186 aa18.81■□□□□ 0.6
SHMT2-225ENST00000556798 GPR65Q8IYL9 337 aa18.81■□□□□ 0.6
SHMT2-225ENST00000556798 PABPC5Q96DU9 382 aaKnown RBP18.81■□□□□ 0.6
SHMT2-225ENST00000556798 UTP3Q9NQZ2 479 aaKnown RBP eCLIP18.81■□□□□ 0.66e-6■□□□□ 11
SHMT2-225ENST00000556798 ANO10Q9NW15 660 aa18.81■□□□□ 0.6
SHMT2-225ENST00000556798 FNIP2Q9P278 1114 aa18.81■□□□□ 0.6
SHMT2-225ENST00000556798 BARX2Q9UMQ3 279 aaPredicted RBP18.81■□□□□ 0.6
SHMT2-225ENST00000556798 CDY1Q9Y6F8 540 aa18.81■□□□□ 0.6
SHMT2-225ENST00000556798 C2orf16Q68DN1 1984 aa18.81■□□□□ 0.6
SHMT2-225ENST00000556798 HLA-DRAP01903 254 aa18.8■□□□□ 0.6
SHMT2-225ENST00000556798 TYMPP19971 482 aa18.8■□□□□ 0.6
SHMT2-225ENST00000556798 PAX3P23760 479 aa18.8■□□□□ 0.6
SHMT2-225ENST00000556798 ERCC5P28715 1186 aaPredicted RBP18.8■□□□□ 0.6
SHMT2-225ENST00000556798 PIK3CAP42336 1068 aa18.8■□□□□ 0.6
SHMT2-225ENST00000556798 CLCN4P51793 760 aa18.8■□□□□ 0.6
Retrieved 100 of 20,778 RNA–protein pairs in 43.8 ms