RNA–Protein interactions for RNA: ENST00000554997.1

SYNE2-215, Transcript of spectrin repeat containing nuclear envelope protein 2, humanhuman

TSL 2

Gene SYNE2, Length 711 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE2-215ENST00000554997 TIGD5Q53EQ6 642 aa10.96□□□□□ -0.65
SYNE2-215ENST00000554997 LIMS2Q7Z4I7 341 aa10.96□□□□□ -0.65
SYNE2-215ENST00000554997 C3orf58Q8NDZ4 430 aa10.96□□□□□ -0.65
SYNE2-215ENST00000554997 ZNF560Q96MR9 790 aa10.96□□□□□ -0.65
SYNE2-215ENST00000554997 TGS1Q96RS0 853 aaKnown RBP10.96□□□□□ -0.65
SYNE2-215ENST00000554997 CRACR2AQ9BSW2 395 aa10.96□□□□□ -0.65
SYNE2-215ENST00000554997 IMPG2Q9BZV3 1241 aa10.96□□□□□ -0.65
SYNE2-215ENST00000554997 SLC28A3Q9HAS3 691 aa10.96□□□□□ -0.65
SYNE2-215ENST00000554997 MARCH5Q9NX47 278 aa10.96□□□□□ -0.65
SYNE2-215ENST00000554997 IFNKQ9P0W0 207 aa10.96□□□□□ -0.65
SYNE2-215ENST00000554997 PRG3Q9Y2Y8 225 aaPredicted RBP10.96□□□□□ -0.65
SYNE2-215ENST00000554997 NUB1Q9Y5A7 615 aa10.96□□□□□ -0.65
SYNE2-215ENST00000554997 COL4A6Q14031 1691 aa10.95□□□□□ -0.66
SYNE2-215ENST00000554997 GOLGA6L3A6NEY3 463 aa10.95□□□□□ -0.66
SYNE2-215ENST00000554997 F8W810 466 aa10.95□□□□□ -0.66
SYNE2-215ENST00000554997 CYB561D2O14569 222 aa10.95□□□□□ -0.66
SYNE2-215ENST00000554997 AP5Z1O43299 807 aa10.95□□□□□ -0.66
SYNE2-215ENST00000554997 ITGB1P05556 798 aa10.95□□□□□ -0.66
SYNE2-215ENST00000554997 TPM3P06753 285 aa10.95□□□□□ -0.66
SYNE2-215ENST00000554997 P4HA1P13674 534 aa10.95□□□□□ -0.66
SYNE2-215ENST00000554997 PBX3P40426 434 aa10.95□□□□□ -0.66
SYNE2-215ENST00000554997 PLCB2Q00722 1185 aa10.95□□□□□ -0.66
SYNE2-215ENST00000554997 ELAVL2Q12926 359 aaKnown RBP10.95□□□□□ -0.66
SYNE2-215ENST00000554997 GSE1Q14687 1217 aa10.95□□□□□ -0.66
SYNE2-215ENST00000554997 ZNF699Q32M78 642 aa10.95□□□□□ -0.66
SYNE2-215ENST00000554997 ZNF667Q5HYK9 610 aa10.95□□□□□ -0.66
SYNE2-215ENST00000554997 SMYD5Q6GMV2 418 aa10.95□□□□□ -0.66
SYNE2-215ENST00000554997 PHLDB3Q6NSJ2 640 aa10.95□□□□□ -0.66
SYNE2-215ENST00000554997 DPY19L2P1Q6NXN4 242 aa10.95□□□□□ -0.66
SYNE2-215ENST00000554997 TRIM65Q6PJ69 517 aa10.95□□□□□ -0.66
SYNE2-215ENST00000554997 DSTYKQ6XUX3 929 aa10.95□□□□□ -0.66
SYNE2-215ENST00000554997 DDX53Q86TM3 631 aaKnown RBP10.95□□□□□ -0.66
SYNE2-215ENST00000554997 KLHL23Q8NBE8 558 aa10.95□□□□□ -0.66
SYNE2-215ENST00000554997 TATDN2Q93075 761 aa10.95□□□□□ -0.66
SYNE2-215ENST00000554997 SUSD3Q96L08 255 aa10.95□□□□□ -0.66
SYNE2-215ENST00000554997 SENP8Q96LD8 212 aa10.95□□□□□ -0.66
SYNE2-215ENST00000554997 FAM81BQ96LP2 452 aa10.95□□□□□ -0.66
SYNE2-215ENST00000554997 PI4K2AQ9BTU6 479 aa10.95□□□□□ -0.66
SYNE2-215ENST00000554997 GPR62Q9BZJ7 368 aa10.95□□□□□ -0.66
SYNE2-215ENST00000554997 XPO4Q9C0E2 1151 aaKnown RBP10.95□□□□□ -0.66
SYNE2-215ENST00000554997 INTS2Q9H0H0 1204 aaKnown RBP10.95□□□□□ -0.66
SYNE2-215ENST00000554997 NKX2-4Q9H2Z4 354 aa10.95□□□□□ -0.66
SYNE2-215ENST00000554997 APOBEC3GQ9HC16 384 aaKnown RBP10.95□□□□□ -0.66
SYNE2-215ENST00000554997 PLCB1Q9NQ66 1216 aa10.95□□□□□ -0.66
SYNE2-215ENST00000554997 PUF60Q9UHX1 559 aaKnown RBP10.95□□□□□ -0.66
SYNE2-215ENST00000554997 LZTS1Q9Y250 596 aa10.95□□□□□ -0.66
SYNE2-215ENST00000554997 SIK3Q9Y2K2 1263 aa10.95□□□□□ -0.66
SYNE2-215ENST00000554997 ARHGEF37A1IGU5 675 aa10.94□□□□□ -0.66
SYNE2-215ENST00000554997 HUS1O60921 280 aa10.94□□□□□ -0.66
SYNE2-215ENST00000554997 FGF18O76093 207 aa10.94□□□□□ -0.66
SYNE2-215ENST00000554997 ARHGEF15O94989 841 aa10.94□□□□□ -0.66
SYNE2-215ENST00000554997 DNAJB2P25686 324 aa10.94□□□□□ -0.66
SYNE2-215ENST00000554997 PBX1P40424 430 aa10.94□□□□□ -0.66
SYNE2-215ENST00000554997 BRCC3P46736 316 aa10.94□□□□□ -0.66
SYNE2-215ENST00000554997 TNNC1P63316 161 aa10.94□□□□□ -0.66
SYNE2-215ENST00000554997 LRMPQ12912 555 aa10.94□□□□□ -0.66
SYNE2-215ENST00000554997 SYCP1Q15431 976 aa10.94□□□□□ -0.66
SYNE2-215ENST00000554997 SOWAHAQ2M3V2 549 aa10.94□□□□□ -0.66
SYNE2-215ENST00000554997 KLHDC7AQ5VTJ3 777 aa10.94□□□□□ -0.66
SYNE2-215ENST00000554997 TAS1R1Q7RTX1 841 aa10.94□□□□□ -0.66
SYNE2-215ENST00000554997 TMEM173Q86WV6 379 aaPredicted RBP10.94□□□□□ -0.66
SYNE2-215ENST00000554997 RNF168Q8IYW5 571 aaPredicted RBP10.94□□□□□ -0.66
SYNE2-215ENST00000554997 TOP6BLQ8N6T0 577 aa10.94□□□□□ -0.66
SYNE2-215ENST00000554997 APPL2Q8NEU8 664 aa10.94□□□□□ -0.66
SYNE2-215ENST00000554997 BCL7CQ8WUZ0 217 aaPredicted RBP10.94□□□□□ -0.66
SYNE2-215ENST00000554997 JAKMIP2Q96AA8 810 aa10.94□□□□□ -0.66
SYNE2-215ENST00000554997 TIFAQ96CG3 184 aa10.94□□□□□ -0.66
SYNE2-215ENST00000554997 TMEM169Q96HH4 297 aa10.94□□□□□ -0.66
SYNE2-215ENST00000554997 NT5C1BQ96P26 610 aa10.94□□□□□ -0.66
SYNE2-215ENST00000554997 MMS19Q96T76 1030 aa10.94□□□□□ -0.66
SYNE2-215ENST00000554997 C17orf80Q9BSJ5 609 aa10.94□□□□□ -0.66
SYNE2-215ENST00000554997 TRIM5Q9C035 493 aa10.94□□□□□ -0.66
SYNE2-215ENST00000554997 FAM124BQ9H5Z6 455 aaPredicted RBP10.94□□□□□ -0.66
SYNE2-215ENST00000554997 CYP3A43Q9HB55 503 aa10.94□□□□□ -0.66
SYNE2-215ENST00000554997 SIX2Q9NPC8 291 aa10.94□□□□□ -0.66
SYNE2-215ENST00000554997 CHST7Q9NS84 486 aa10.94□□□□□ -0.66
SYNE2-215ENST00000554997 GCNT4Q9P109 453 aa10.94□□□□□ -0.66
SYNE2-215ENST00000554997 NXF1Q9UBU9 619 aaKnown RBP10.94□□□□□ -0.66
SYNE2-215ENST00000554997 PCDHB8Q9UN66 801 aa10.94□□□□□ -0.66
SYNE2-215ENST00000554997 DAAM1Q9Y4D1 1078 aa10.94□□□□□ -0.66
SYNE2-215ENST00000554997 SNX9Q9Y5X1 595 aa10.94□□□□□ -0.66
SYNE2-215ENST00000554997 SF3B1O75533 1304 aaKnown RBP eCLIP10.93□□□□□ -0.66
SYNE2-215ENST00000554997 H3BNC9 293 aa10.93□□□□□ -0.66
SYNE2-215ENST00000554997 SYN3O14994 580 aa10.93□□□□□ -0.66
SYNE2-215ENST00000554997 TACC1O75410 805 aa10.93□□□□□ -0.66
SYNE2-215ENST00000554997 NOL4O94818 638 aa10.93□□□□□ -0.66
SYNE2-215ENST00000554997 OAZ2O95190 189 aa10.93□□□□□ -0.66
SYNE2-215ENST00000554997 SOD2P04179 222 aa10.93□□□□□ -0.66
SYNE2-215ENST00000554997 CYP11A1P05108 521 aa10.93□□□□□ -0.66
SYNE2-215ENST00000554997 TYMPP19971 482 aa10.93□□□□□ -0.66
SYNE2-215ENST00000554997 FGFR3P22607 806 aa10.93□□□□□ -0.66
SYNE2-215ENST00000554997 TBXAS1P24557 533 aaPredicted RBP10.93□□□□□ -0.66
SYNE2-215ENST00000554997 CTNNB1P35222 781 aa10.93□□□□□ -0.66
SYNE2-215ENST00000554997 MFAP3P55082 362 aa10.93□□□□□ -0.66
SYNE2-215ENST00000554997 NOP14P78316 857 aaKnown RBP10.93□□□□□ -0.66
SYNE2-215ENST00000554997 GCNT1Q02742 428 aa10.93□□□□□ -0.66
SYNE2-215ENST00000554997 UBE3AQ05086 875 aa10.93□□□□□ -0.66
SYNE2-215ENST00000554997 CUL2Q13617 745 aa10.93□□□□□ -0.66
SYNE2-215ENST00000554997 MRPL58Q14197 206 aaKnown RBP10.93□□□□□ -0.66
SYNE2-215ENST00000554997 USP41Q3LFD5 358 aa10.93□□□□□ -0.66
Retrieved 100 of 20,778 RNA–protein pairs in 45.6 ms