RNA–Protein interactions for RNA: ENST00000554467.5

SHMT2-212, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 2

Gene SHMT2, Length 3,416 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-212ENST00000554467 MCL1Q07820 350 aa12.46□□□□□ -0.41
SHMT2-212ENST00000554467 TFDP1Q14186 410 aa12.46□□□□□ -0.41
SHMT2-212ENST00000554467 CLEC16AQ2KHT3 1053 aa12.46□□□□□ -0.41
SHMT2-212ENST00000554467 FAM228AQ86W67 206 aa12.46□□□□□ -0.41
SHMT2-212ENST00000554467 FZD8Q9H461 694 aa12.46□□□□□ -0.41
SHMT2-212ENST00000554467 AMACRQ9UHK6 382 aa12.46□□□□□ -0.41
SHMT2-212ENST00000554467 POLIQ9UNA4 740 aa12.46□□□□□ -0.41
SHMT2-212ENST00000554467 SIP14410 1827 aa12.46□□□□□ -0.41
SHMT2-212ENST00000554467 KAT6AQ92794 2004 aa12.46□□□□□ -0.41
SHMT2-212ENST00000554467 NFICP08651 508 aa12.46□□□□□ -0.41
SHMT2-212ENST00000554467 HOXC6P09630 235 aa12.46□□□□□ -0.41
SHMT2-212ENST00000554467 TMEM191BP0C7N4 346 aa12.46□□□□□ -0.41
SHMT2-212ENST00000554467 CYP2B6P20813 491 aa12.46□□□□□ -0.41
SHMT2-212ENST00000554467 RRM1P23921 792 aa12.46□□□□□ -0.41
SHMT2-212ENST00000554467 GNA15P30679 374 aa12.46□□□□□ -0.41
SHMT2-212ENST00000554467 SLC26A2P50443 739 aa12.46□□□□□ -0.41
SHMT2-212ENST00000554467 ACTN3Q08043 901 aaPredicted RBP12.46□□□□□ -0.41
SHMT2-212ENST00000554467 FAM110CQ1W6H9 321 aa12.46□□□□□ -0.41
SHMT2-212ENST00000554467 KIRREL3Q8IZU9 778 aa12.46□□□□□ -0.41
SHMT2-212ENST00000554467 C11orf70Q9BRQ4 267 aa12.46□□□□□ -0.41
SHMT2-212ENST00000554467 CXCL16Q9H2A7 254 aa12.46□□□□□ -0.41
SHMT2-212ENST00000554467 MGAMO43451 1857 aa12.46□□□□□ -0.42
SHMT2-212ENST00000554467 MEFVO15553 781 aaPredicted RBP12.46□□□□□ -0.42
SHMT2-212ENST00000554467 SPOPO43791 374 aa12.46□□□□□ -0.42
SHMT2-212ENST00000554467 MMP3P08254 477 aa12.46□□□□□ -0.42
SHMT2-212ENST00000554467 FAM153BP0C7A2 387 aa12.46□□□□□ -0.42
SHMT2-212ENST00000554467 ATP1A2P50993 1020 aa12.46□□□□□ -0.42
SHMT2-212ENST00000554467 TRPC3Q13507 836 aa12.46□□□□□ -0.42
SHMT2-212ENST00000554467 GRIK4Q16099 956 aa12.46□□□□□ -0.42
SHMT2-212ENST00000554467 FAM153CQ494X1 144 aa12.46□□□□□ -0.42
SHMT2-212ENST00000554467 ACAD10Q6JQN1 1059 aa12.46□□□□□ -0.42
SHMT2-212ENST00000554467 TSHZ1Q6ZSZ6 1077 aa12.46□□□□□ -0.42
SHMT2-212ENST00000554467 PBKQ96KB5 322 aa12.46□□□□□ -0.42
SHMT2-212ENST00000554467 RNPC3Q96LT9 517 aaKnown RBP12.46□□□□□ -0.42
SHMT2-212ENST00000554467 BUD13Q9BRD0 619 aaKnown RBP eCLIP12.46□□□□□ -0.427e-8■■□□□ 13.7
SHMT2-212ENST00000554467 C2orf40Q9H1Z8 148 aa12.46□□□□□ -0.42
SHMT2-212ENST00000554467 FAM153AQ9UHL3 310 aa12.46□□□□□ -0.42
SHMT2-212ENST00000554467 DAAM1Q9Y4D1 1078 aa12.46□□□□□ -0.42
SHMT2-212ENST00000554467 CDH8P55286 799 aa12.45□□□□□ -0.42
SHMT2-212ENST00000554467 TAF1CQ15572 869 aaPredicted RBP12.45□□□□□ -0.42
SHMT2-212ENST00000554467 TTMPQ5BVD1 217 aa12.45□□□□□ -0.42
SHMT2-212ENST00000554467 MARCH8Q5T0T0 291 aa12.45□□□□□ -0.42
SHMT2-212ENST00000554467 MTHFD1LQ6UB35 978 aa12.45□□□□□ -0.42
SHMT2-212ENST00000554467 RHOT2Q8IXI1 618 aa12.45□□□□□ -0.42
SHMT2-212ENST00000554467 GTF3C2Q8WUA4 911 aaPredicted RBP12.45□□□□□ -0.42
SHMT2-212ENST00000554467 VTI1AQ96AJ9 217 aa12.45□□□□□ -0.42
SHMT2-212ENST00000554467 IMPG2Q9BZV3 1241 aa12.45□□□□□ -0.42
SHMT2-212ENST00000554467 TRIM31Q9BZY9 425 aa12.45□□□□□ -0.42
SHMT2-212ENST00000554467 PTPRHQ9HD43 1115 aa12.45□□□□□ -0.42
SHMT2-212ENST00000554467 ERVK-5Q9HDB9 667 aa12.45□□□□□ -0.42
SHMT2-212ENST00000554467 DDX20Q9UHI6 824 aaKnown RBP12.45□□□□□ -0.42
SHMT2-212ENST00000554467 PCDHB2Q9Y5E7 798 aa12.45□□□□□ -0.42
SHMT2-212ENST00000554467 KIAA0391O15091 583 aaKnown RBP12.45□□□□□ -0.42
SHMT2-212ENST00000554467 CHUKO15111 745 aa12.45□□□□□ -0.42
SHMT2-212ENST00000554467 RASSF9O75901 435 aa12.45□□□□□ -0.42
SHMT2-212ENST00000554467 NEBLO76041 1014 aa12.45□□□□□ -0.42
SHMT2-212ENST00000554467 GZMAP12544 262 aa12.45□□□□□ -0.42
SHMT2-212ENST00000554467 ARF4P18085 180 aaPredicted RBP12.45□□□□□ -0.42
SHMT2-212ENST00000554467 BEX3Q00994 111 aa12.45□□□□□ -0.42
SHMT2-212ENST00000554467 HLTFQ14527 1009 aaKnown RBP eCLIP12.45□□□□□ -0.42
SHMT2-212ENST00000554467 DUOXA2Q1HG44 320 aa12.45□□□□□ -0.42
SHMT2-212ENST00000554467 ARL8AQ96BM9 186 aa12.45□□□□□ -0.42
SHMT2-212ENST00000554467 ANAPC7Q9UJX3 599 aa12.45□□□□□ -0.42
SHMT2-212ENST00000554467 TCRBV7S2A1N4TA0A589 114 aa12.44□□□□□ -0.42
SHMT2-212ENST00000554467 SART1O43290 800 aaKnown RBP12.44□□□□□ -0.42
SHMT2-212ENST00000554467 GAS2O43903 313 aaKnown RBP12.44□□□□□ -0.42
SHMT2-212ENST00000554467 ZEB2O60315 1214 aa12.44□□□□□ -0.42
SHMT2-212ENST00000554467 ZC3H11AO75152 810 aaKnown RBP eCLIP12.44□□□□□ -0.42
SHMT2-212ENST00000554467 STAG3L1P0CL83 205 aa12.44□□□□□ -0.42
SHMT2-212ENST00000554467 PHKA2P46019 1235 aa12.44□□□□□ -0.42
SHMT2-212ENST00000554467 TNFAIP2Q03169 654 aa12.44□□□□□ -0.42
SHMT2-212ENST00000554467 ITIH3Q06033 890 aa12.44□□□□□ -0.42
SHMT2-212ENST00000554467 DUSP28Q4G0W2 176 aa12.44□□□□□ -0.42
SHMT2-212ENST00000554467 ZNF484Q5JVG2 852 aa12.44□□□□□ -0.42
SHMT2-212ENST00000554467 WDR49Q8IV35 697 aa12.44□□□□□ -0.42
SHMT2-212ENST00000554467 KIAA0319LQ8IZA0 1049 aa12.44□□□□□ -0.42
SHMT2-212ENST00000554467 CASKIN2Q8WXE0 1202 aa12.44□□□□□ -0.42
SHMT2-212ENST00000554467 CDHR5Q9HBB8 845 aa12.44□□□□□ -0.42
SHMT2-212ENST00000554467 KLC4Q9NSK0 619 aa12.44□□□□□ -0.42
SHMT2-212ENST00000554467 LACTBL1A8MY62 500 aa12.44□□□□□ -0.42
SHMT2-212ENST00000554467 ASS1P00966 412 aaKnown RBP12.44□□□□□ -0.42
SHMT2-212ENST00000554467 UNGP13051 313 aaPredicted RBP12.44□□□□□ -0.42
SHMT2-212ENST00000554467 PROZP22891 400 aa12.44□□□□□ -0.42
SHMT2-212ENST00000554467 GJC1P36383 396 aa12.44□□□□□ -0.42
SHMT2-212ENST00000554467 PDCLQ13371 301 aa12.44□□□□□ -0.42
SHMT2-212ENST00000554467 OLFML2BQ68BL8 750 aa12.44□□□□□ -0.42
SHMT2-212ENST00000554467 ENOSF1Q7L5Y1 443 aa12.44□□□□□ -0.42
SHMT2-212ENST00000554467 SH2D3CQ8N5H7 860 aa12.44□□□□□ -0.42
SHMT2-212ENST00000554467 ACTRT1Q8TDG2 376 aa12.44□□□□□ -0.42
SHMT2-212ENST00000554467 ABHD16BQ9H3Z7 469 aa12.44□□□□□ -0.42
SHMT2-212ENST00000554467 RNF14Q9UBS8 474 aa12.44□□□□□ -0.42
SHMT2-212ENST00000554467 SLC45A1Q9Y2W3 748 aa12.44□□□□□ -0.42
SHMT2-212ENST00000554467 O00370 1275 aa12.44□□□□□ -0.42
SHMT2-212ENST00000554467 NSFP46459 744 aaKnown RBP12.44□□□□□ -0.42
SHMT2-212ENST00000554467 TNNC1P63316 161 aa12.44□□□□□ -0.42
SHMT2-212ENST00000554467 FKBP1BP68106 108 aa12.44□□□□□ -0.42
SHMT2-212ENST00000554467 ZNF200P98182 395 aaPredicted RBP12.44□□□□□ -0.42
SHMT2-212ENST00000554467 AMHR2Q16671 573 aa12.44□□□□□ -0.42
SHMT2-212ENST00000554467 ZNF699Q32M78 642 aa12.44□□□□□ -0.42
SHMT2-212ENST00000554467 JADE1Q6IE81 842 aa12.44□□□□□ -0.42
Retrieved 100 of 20,778 RNA–protein pairs in 30 ms