RNA–Protein interactions for RNA: ENST00000553011.5

PTCH1-226, Transcript of patched 1, humanhuman

TSL 1 (best)

Gene PTCH1, Length 1,037 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCH1-226ENST00000553011 ZNF516Q92618 1163 aa15.24■□□□□ 0.03
PTCH1-226ENST00000553011 ANKRD36BP1Q96IX9 119 aa15.24■□□□□ 0.03
PTCH1-226ENST00000553011 CLSTN3Q9BQT9 956 aa15.24■□□□□ 0.03
PTCH1-226ENST00000553011 APOBEC3CQ9NRW3 190 aaKnown RBP eCLIP15.24■□□□□ 0.03
PTCH1-226ENST00000553011 FNIP2Q9P278 1114 aa15.24■□□□□ 0.03
PTCH1-226ENST00000553011 MTRRQ9UBK8 725 aa15.24■□□□□ 0.03
PTCH1-226ENST00000553011 ITGA11Q9UKX5 1188 aa15.24■□□□□ 0.03
PTCH1-226ENST00000553011 PCDHB8Q9UN66 801 aa15.24■□□□□ 0.03
PTCH1-226ENST00000553011 FRMD4BQ9Y2L6 1034 aa15.24■□□□□ 0.03
PTCH1-226ENST00000553011 TIMM13Q9Y5L4 95 aaPredicted RBP15.24■□□□□ 0.03
PTCH1-226ENST00000553011 SPTBN5Q9NRC6 3674 aaKnown RBP15.23■□□□□ 0.03
PTCH1-226ENST00000553011 UNC80Q8N2C7 3258 aa15.23■□□□□ 0.03
PTCH1-226ENST00000553011 FSD2A1L4K1 749 aa15.23■□□□□ 0.03
PTCH1-226ENST00000553011 LRRIQ3A6PVS8 624 aaPredicted RBP15.23■□□□□ 0.03
PTCH1-226ENST00000553011 PSMA7O14818 248 aa15.23■□□□□ 0.03
PTCH1-226ENST00000553011 KRT19P08727 400 aa15.23■□□□□ 0.03
PTCH1-226ENST00000553011 CLCN4P51793 760 aa15.23■□□□□ 0.03
PTCH1-226ENST00000553011 DLG4P78352 724 aa15.23■□□□□ 0.03
PTCH1-226ENST00000553011 TMEM184AQ6ZMB5 413 aa15.23■□□□□ 0.03
PTCH1-226ENST00000553011 TRAPPC11Q7Z392 1133 aa15.23■□□□□ 0.03
PTCH1-226ENST00000553011 PALB2Q86YC2 1186 aa15.23■□□□□ 0.03
PTCH1-226ENST00000553011 FAM186BQ8IYM0 893 aa15.23■□□□□ 0.03
PTCH1-226ENST00000553011 CSGALNACT2Q8N6G5 542 aa15.23■□□□□ 0.03
PTCH1-226ENST00000553011 TRIML1Q8N9V2 468 aa15.23■□□□□ 0.03
PTCH1-226ENST00000553011 BORCS6Q96GS4 357 aa15.23■□□□□ 0.03
PTCH1-226ENST00000553011 DHTKD1Q96HY7 919 aaPredicted RBP15.23■□□□□ 0.03
PTCH1-226ENST00000553011 SENP8Q96LD8 212 aa15.23■□□□□ 0.03
PTCH1-226ENST00000553011 TSG101Q99816 390 aa15.23■□□□□ 0.03
PTCH1-226ENST00000553011 CTNND2Q9UQB3 1225 aa15.23■□□□□ 0.03
PTCH1-226ENST00000553011 CUL9Q8IWT3 2517 aa15.23■□□□□ 0.03
PTCH1-226ENST00000553011 CETN3O15182 167 aa15.22■□□□□ 0.03
PTCH1-226ENST00000553011 PSMC2P35998 433 aaKnown RBP15.22■□□□□ 0.03
PTCH1-226ENST00000553011 KCNQ1P51787 676 aa15.22■□□□□ 0.03
PTCH1-226ENST00000553011 RBP5P82980 135 aa15.22■□□□□ 0.03
PTCH1-226ENST00000553011 CREMQ03060 361 aa15.22■□□□□ 0.03
PTCH1-226ENST00000553011 BFSP1Q12934 665 aa15.22■□□□□ 0.03
PTCH1-226ENST00000553011 MRPL58Q14197 206 aaKnown RBP15.22■□□□□ 0.03
PTCH1-226ENST00000553011 LEXMQ3ZCV2 418 aa15.22■□□□□ 0.03
PTCH1-226ENST00000553011 C1orf220Q5T0J3 134 aa15.22■□□□□ 0.03
PTCH1-226ENST00000553011 ANKRD54Q6NXT1 300 aa15.22■□□□□ 0.03
PTCH1-226ENST00000553011 PDXDC1Q6P996 788 aa15.22■□□□□ 0.03
PTCH1-226ENST00000553011 ANKS3Q6ZW76 656 aa15.22■□□□□ 0.03
PTCH1-226ENST00000553011 PPFIBP1Q86W92 1011 aa15.22■□□□□ 0.03
PTCH1-226ENST00000553011 APPL2Q8NEU8 664 aa15.22■□□□□ 0.03
PTCH1-226ENST00000553011 GADD45GIP1Q8TAE8 222 aaPredicted RBP15.22■□□□□ 0.03
PTCH1-226ENST00000553011 NELFBQ8WX92 580 aa15.22■□□□□ 0.03
PTCH1-226ENST00000553011 CASP10Q92851 521 aa15.22■□□□□ 0.03
PTCH1-226ENST00000553011 MSLNLQ96KJ4 702 aa15.22■□□□□ 0.03
PTCH1-226ENST00000553011 ZNF560Q96MR9 790 aa15.22■□□□□ 0.03
PTCH1-226ENST00000553011 APOL5Q9BWW9 433 aa15.22■□□□□ 0.03
PTCH1-226ENST00000553011 BACE2Q9Y5Z0 518 aa15.22■□□□□ 0.03
PTCH1-226ENST00000553011 CDY1Q9Y6F8 540 aa15.22■□□□□ 0.03
PTCH1-226ENST00000553011 KPNA7A9QM74 516 aa15.21■□□□□ 0.03
PTCH1-226ENST00000553011 MAPK13O15264 365 aa15.21■□□□□ 0.03
PTCH1-226ENST00000553011 TBC1D4O60343 1298 aa15.21■□□□□ 0.03
PTCH1-226ENST00000553011 GLUD1P00367 558 aa15.21■□□□□ 0.03
PTCH1-226ENST00000553011 SPATA31D3P0C874 917 aa15.21■□□□□ 0.03
PTCH1-226ENST00000553011 SRGAP2BP0DMP2 458 aa15.21■□□□□ 0.03
PTCH1-226ENST00000553011 PAX3P23760 479 aa15.21■□□□□ 0.03
PTCH1-226ENST00000553011 OR1D2P34982 312 aa15.21■□□□□ 0.03
PTCH1-226ENST00000553011 PPP1R2P41236 205 aa15.21■□□□□ 0.03
PTCH1-226ENST00000553011 PNPLA4P41247 253 aa15.21■□□□□ 0.03
PTCH1-226ENST00000553011 STX17P56962 302 aa15.21■□□□□ 0.03
PTCH1-226ENST00000553011 MRPS5P82675 430 aaKnown RBP15.21■□□□□ 0.03
PTCH1-226ENST00000553011 LRRC63Q05C16 580 aa15.21■□□□□ 0.03
PTCH1-226ENST00000553011 SV2CQ496J9 727 aa15.21■□□□□ 0.03
PTCH1-226ENST00000553011 CTXN3Q4LDR2 81 aa15.21■□□□□ 0.03
PTCH1-226ENST00000553011 TTI2Q6NXR4 508 aa15.21■□□□□ 0.03
PTCH1-226ENST00000553011 SYCE2Q6PIF2 218 aa15.21■□□□□ 0.03
PTCH1-226ENST00000553011 SPATA31D4Q6ZUB0 917 aa15.21■□□□□ 0.03
PTCH1-226ENST00000553011 ZC3H3Q8IXZ2 948 aaKnown RBP15.21■□□□□ 0.03
PTCH1-226ENST00000553011 LRRC52Q8N7C0 313 aa15.21■□□□□ 0.03
PTCH1-226ENST00000553011 TMC2Q8TDI7 906 aa15.21■□□□□ 0.03
PTCH1-226ENST00000553011 ATXN2LQ8WWM7 1075 aaKnown RBP15.21■□□□□ 0.03
PTCH1-226ENST00000553011 DUSP9Q99956 384 aaKnown RBP15.21■□□□□ 0.03
PTCH1-226ENST00000553011 CD207Q9UJ71 328 aa15.21■□□□□ 0.03
PTCH1-226ENST00000553011 FBXL5Q9UKA1 691 aa15.21■□□□□ 0.03
PTCH1-226ENST00000553011 CYB561D2O14569 222 aa15.2■□□□□ 0.02
PTCH1-226ENST00000553011 TGM5O43548 720 aa15.2■□□□□ 0.02
PTCH1-226ENST00000553011 MBD3O95983 291 aa15.2■□□□□ 0.02
PTCH1-226ENST00000553011 CST3P01034 146 aaPredicted RBP15.2■□□□□ 0.02
PTCH1-226ENST00000553011 TRIM49P0CI25 452 aa15.2■□□□□ 0.02
PTCH1-226ENST00000553011 TRIM49CP0CI26 452 aa15.2■□□□□ 0.02
PTCH1-226ENST00000553011 ODC1P11926 461 aa15.2■□□□□ 0.02
PTCH1-226ENST00000553011 TYMPP19971 482 aa15.2■□□□□ 0.02
PTCH1-226ENST00000553011 VAMP7P51809 220 aa15.2■□□□□ 0.02
PTCH1-226ENST00000553011 CLDN10P78369 228 aa15.2■□□□□ 0.02
PTCH1-226ENST00000553011 FKBP3Q00688 224 aaKnown RBP15.2■□□□□ 0.02
PTCH1-226ENST00000553011 YWHAHQ04917 246 aaPredicted RBP15.2■□□□□ 0.02
PTCH1-226ENST00000553011 PAK1Q13153 545 aa15.2■□□□□ 0.02
PTCH1-226ENST00000553011 AAK1Q2M2I8 961 aa15.2■□□□□ 0.02
PTCH1-226ENST00000553011 TDRD10Q5VZ19 366 aaKnown RBP15.2■□□□□ 0.02
PTCH1-226ENST00000553011 ZNF280DQ6N043 979 aa15.2■□□□□ 0.02
PTCH1-226ENST00000553011 LILRA6Q6PI73 481 aa15.2■□□□□ 0.02
PTCH1-226ENST00000553011 INTS8Q75QN2 995 aaKnown RBP15.2■□□□□ 0.02
PTCH1-226ENST00000553011 USP37Q86T82 979 aa15.2■□□□□ 0.02
PTCH1-226ENST00000553011 C12orf76Q8N812 135 aaPredicted RBP15.2■□□□□ 0.02
PTCH1-226ENST00000553011 FEZF2Q8TBJ5 459 aa15.2■□□□□ 0.02
PTCH1-226ENST00000553011 HPDLQ96IR7 371 aa15.2■□□□□ 0.02
PTCH1-226ENST00000553011 ASB2Q96Q27 587 aa15.2■□□□□ 0.02
Retrieved 100 of 20,778 RNA–protein pairs in 31.5 ms