RNA–Protein interactions for RNA: ENST00000552828.5

CKAP4-202, Transcript of cytoskeleton associated protein 4, humanhuman

TSL 3

Gene CKAP4, Length 831 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CKAP4-202ENST00000552828 HYIQ5T013 277 aa12.92□□□□□ -0.34
CKAP4-202ENST00000552828 IQCEQ6IPM2 695 aa12.92□□□□□ -0.34
CKAP4-202ENST00000552828 VITQ6UXI7 678 aa12.92□□□□□ -0.34
CKAP4-202ENST00000552828 ZPBP2Q6X784 338 aa12.92□□□□□ -0.34
CKAP4-202ENST00000552828 KCNK18Q7Z418 384 aa12.92□□□□□ -0.34
CKAP4-202ENST00000552828 ELMOD1Q8N336 334 aa12.92□□□□□ -0.34
CKAP4-202ENST00000552828 TMEM161BQ8NDZ6 487 aa12.92□□□□□ -0.34
CKAP4-202ENST00000552828 DDX12PQ92771 950 aa12.92□□□□□ -0.34
CKAP4-202ENST00000552828 KCNN1Q92952 543 aa12.92□□□□□ -0.34
CKAP4-202ENST00000552828 ZBTB45Q96K62 511 aaPredicted RBP12.92□□□□□ -0.34
CKAP4-202ENST00000552828 ZNF512Q96ME7 567 aaPredicted RBP12.92□□□□□ -0.34
CKAP4-202ENST00000552828 OXCT2Q9BYC2 517 aaPredicted RBP12.92□□□□□ -0.34
CKAP4-202ENST00000552828 CHRDQ9H2X0 955 aa12.92□□□□□ -0.34
CKAP4-202ENST00000552828 BRD9Q9H8M2 597 aa12.92□□□□□ -0.34
CKAP4-202ENST00000552828 PLEKHA5Q9HAU0 1116 aa12.92□□□□□ -0.34
CKAP4-202ENST00000552828 ZNF334Q9HCZ1 680 aaPredicted RBP12.92□□□□□ -0.34
CKAP4-202ENST00000552828 NCDNQ9UBB6 729 aa12.92□□□□□ -0.34
CKAP4-202ENST00000552828 PCDHB8Q9UN66 801 aa12.92□□□□□ -0.34
CKAP4-202ENST00000552828 SMG5Q9UPR3 1016 aaKnown RBP12.92□□□□□ -0.34
CKAP4-202ENST00000552828 GTF3C5Q9Y5Q8 519 aaPredicted RBP12.92□□□□□ -0.34
CKAP4-202ENST00000552828 EPG5Q9HCE0 2579 aa12.92□□□□□ -0.34
CKAP4-202ENST00000552828 F5P12259 2224 aa12.92□□□□□ -0.34
CKAP4-202ENST00000552828 PATJQ8NI35 1801 aa12.91□□□□□ -0.34
CKAP4-202ENST00000552828 ARNTLO00327 626 aa12.91□□□□□ -0.34
CKAP4-202ENST00000552828 VNN2O95498 520 aa12.91□□□□□ -0.34
CKAP4-202ENST00000552828 PLS3P13797 630 aa12.91□□□□□ -0.34
CKAP4-202ENST00000552828 CDC25AP30304 524 aa12.91□□□□□ -0.34
CKAP4-202ENST00000552828 LRPAP1P30533 357 aa12.91□□□□□ -0.34
CKAP4-202ENST00000552828 MCM4P33991 863 aa12.91□□□□□ -0.34
CKAP4-202ENST00000552828 AARSP49588 968 aaKnown RBP eCLIP12.91□□□□□ -0.34
CKAP4-202ENST00000552828 TWF1Q12792 350 aa12.91□□□□□ -0.34
CKAP4-202ENST00000552828 STRN3Q13033 797 aa12.91□□□□□ -0.34
CKAP4-202ENST00000552828 GRM2Q14416 872 aa12.91□□□□□ -0.34
CKAP4-202ENST00000552828 NOLC1Q14978 699 aaKnown RBP eCLIP12.91□□□□□ -0.34
CKAP4-202ENST00000552828 ZBTB6Q15916 424 aa12.91□□□□□ -0.34
CKAP4-202ENST00000552828 TSSK4Q6SA08 328 aa12.91□□□□□ -0.34
CKAP4-202ENST00000552828 DTHD1Q6ZMT9 781 aa12.91□□□□□ -0.34
CKAP4-202ENST00000552828 MFSD6LQ8IWD5 586 aa12.91□□□□□ -0.34
CKAP4-202ENST00000552828 HS6ST3Q8IZP7 471 aa12.91□□□□□ -0.34
CKAP4-202ENST00000552828 DEPDC1BQ8WUY9 529 aa12.91□□□□□ -0.34
CKAP4-202ENST00000552828 E2F7Q96AV8 911 aa12.91□□□□□ -0.34
CKAP4-202ENST00000552828 LRRC3Q9BY71 257 aa12.91□□□□□ -0.34
CKAP4-202ENST00000552828 GPR88Q9GZN0 384 aa12.91□□□□□ -0.34
CKAP4-202ENST00000552828 ZSCAN16Q9H4T2 348 aaPredicted RBP12.91□□□□□ -0.34
CKAP4-202ENST00000552828 KCND2Q9NZV8 630 aa12.91□□□□□ -0.34
CKAP4-202ENST00000552828 MIA3Q5JRA6 1907 aa12.91□□□□□ -0.34
CKAP4-202ENST00000552828 TTC26A0AVF1 554 aa12.9□□□□□ -0.34
CKAP4-202ENST00000552828 SFI1A8K8P3 1242 aa12.9□□□□□ -0.34
CKAP4-202ENST00000552828 PRR5-ARHGAP8B1AHC4 643 aa12.9□□□□□ -0.34
CKAP4-202ENST00000552828 CLDN3O15551 220 aa12.9□□□□□ -0.34
CKAP4-202ENST00000552828 BMP15O95972 392 aa12.9□□□□□ -0.34
CKAP4-202ENST00000552828 CYP3A5P20815 502 aa12.9□□□□□ -0.34
CKAP4-202ENST00000552828 MARCKSP29966 332 aaPredicted RBP12.9□□□□□ -0.34
CKAP4-202ENST00000552828 GDI1P31150 447 aa12.9□□□□□ -0.34
CKAP4-202ENST00000552828 VIPR2P41587 438 aa12.9□□□□□ -0.34
CKAP4-202ENST00000552828 SMTNP53814 917 aa12.9□□□□□ -0.34
CKAP4-202ENST00000552828 NRLP54845 237 aa12.9□□□□□ -0.34
CKAP4-202ENST00000552828 ARHGAP8P85298 464 aa12.9□□□□□ -0.34
CKAP4-202ENST00000552828 ATP2C1P98194 919 aaPredicted RBP12.9□□□□□ -0.34
CKAP4-202ENST00000552828 RESTQ13127 1097 aa12.9□□□□□ -0.34
CKAP4-202ENST00000552828 RNF19BQ6ZMZ0 732 aa12.9□□□□□ -0.34
CKAP4-202ENST00000552828 SYT2Q8N9I0 419 aaPredicted RBP12.9□□□□□ -0.34
CKAP4-202ENST00000552828 ZSCAN18Q8TBC5 510 aaPredicted RBP12.9□□□□□ -0.34
CKAP4-202ENST00000552828 SECISBP2LQ93073 1101 aaKnown RBP12.9□□□□□ -0.34
CKAP4-202ENST00000552828 ASAH2Q9NR71 780 aa12.9□□□□□ -0.34
CKAP4-202ENST00000552828 TUBGCP4Q9UGJ1 667 aa12.9□□□□□ -0.34
CKAP4-202ENST00000552828 PIAS3Q9Y6X2 628 aa12.9□□□□□ -0.34
CKAP4-202ENST00000552828 ADRB2P07550 413 aa12.89□□□□□ -0.35
CKAP4-202ENST00000552828 CLTAP09496 248 aa12.89□□□□□ -0.35
CKAP4-202ENST00000552828 CHRNB1P11230 501 aa12.89□□□□□ -0.35
CKAP4-202ENST00000552828 HARSP12081 509 aaKnown RBP12.89□□□□□ -0.35
CKAP4-202ENST00000552828 LMNB2Q03252 620 aa12.89□□□□□ -0.35
CKAP4-202ENST00000552828 YWHAHQ04917 246 aaPredicted RBP12.89□□□□□ -0.35
CKAP4-202ENST00000552828 FCHO2Q0JRZ9 810 aa12.89□□□□□ -0.35
CKAP4-202ENST00000552828 GPR17Q13304 367 aa12.89□□□□□ -0.35
CKAP4-202ENST00000552828 SEZ6Q53EL9 994 aa12.89□□□□□ -0.35
CKAP4-202ENST00000552828 SHKBP1Q8TBC3 707 aa12.89□□□□□ -0.35
CKAP4-202ENST00000552828 FAM3CQ92520 227 aa12.89□□□□□ -0.35
CKAP4-202ENST00000552828 PNMA5Q96PV4 448 aa12.89□□□□□ -0.35
CKAP4-202ENST00000552828 TSPAN18Q96SJ8 248 aa12.89□□□□□ -0.35
CKAP4-202ENST00000552828 HAPLN2Q9GZV7 340 aa12.89□□□□□ -0.35
CKAP4-202ENST00000552828 LMAN1LQ9HAT1 526 aa12.89□□□□□ -0.35
CKAP4-202ENST00000552828 ANKFY1Q9P2R3 1169 aa12.89□□□□□ -0.35
CKAP4-202ENST00000552828 NDRG2Q9UN36 371 aaKnown RBP12.89□□□□□ -0.35
CKAP4-202ENST00000552828 NCANO14594 1321 aa12.88□□□□□ -0.35
CKAP4-202ENST00000552828 OR6C75A6NL08 312 aa12.88□□□□□ -0.35
CKAP4-202ENST00000552828 HEPACAM2A8MVW5 462 aa12.88□□□□□ -0.35
CKAP4-202ENST00000552828 H0YCG3 227 aa12.88□□□□□ -0.35
CKAP4-202ENST00000552828 ZNF263O14978 683 aa12.88□□□□□ -0.35
CKAP4-202ENST00000552828 FAM189A1O60320 539 aa12.88□□□□□ -0.35
CKAP4-202ENST00000552828 CXCL8P10145 99 aa12.88□□□□□ -0.35
CKAP4-202ENST00000552828 MYL4P12829 197 aa12.88□□□□□ -0.35
CKAP4-202ENST00000552828 CPB1P15086 417 aa12.88□□□□□ -0.35
CKAP4-202ENST00000552828 GJA1P17302 382 aa12.88□□□□□ -0.35
CKAP4-202ENST00000552828 SCP2P22307 547 aa12.88□□□□□ -0.35
CKAP4-202ENST00000552828 CCR3P51677 355 aa12.88□□□□□ -0.35
CKAP4-202ENST00000552828 ATXN1P54253 815 aaKnown RBP12.88□□□□□ -0.35
CKAP4-202ENST00000552828 SLC12A3P55017 1021 aa12.88□□□□□ -0.35
CKAP4-202ENST00000552828 PLD1Q13393 1074 aa12.88□□□□□ -0.35
CKAP4-202ENST00000552828 PPP2R5DQ14738 602 aa12.88□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 17.5 ms